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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr5 | genome | chr5:650022..652063 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G02440.2 vs.
Match: EWM28132.1 (hypothetical protein Naga_100036g17 [Nannochloropsis gaditana]) HSP 1 Score: 112.8 bits (281), Expect = 2.000e-21 Identity = 110/264 (41.67%), Postives = 147/264 (55.68%), Query Frame = 0
Query: 81 SPSRRSMPPPPSLSSPRPPSSSAAHQADVSSPLQTLVEDQAMLSVFWSEWRAAEHKFLCRAEAKHISPEYNHLPAETTPTR----RSSRRRPR--ATTVITDPFS---SSRCASP--GRAATACEENKEGEEEEVEDLESLLLSSMLLFEKGTIFNSSRMQQQHQHQRRHL-----SSLVQQENAVCMTEEDRDAKQAECSGVGGGKKDEGEDVAARGEGATDAGAALARQAAYEAKIQKLEAQMVETEVLLGSDTGTIILGLE 329
SPSR S SSPR SS A S L +L+E+Q MLS FW +WR AEHKFL ++ + + + H E+TP+R SS + R A + + S + SP G+ T E+K +E EDLE+ LLSSMLL E+ +SS H H R L SS + + +TE+ RDAKQA+ G G G++D+GED + A AA+AR AYE +IQ+LEA++VETEVLL SD+GT+I GLE
Sbjct: 4 SPSRWRRAAALS-SSPRASPSSEAE-----SSLLSLMEEQVMLSAFWGDWRIAEHKFLFQSTGRRRTDKM-HAVTESTPSRGGGENSSEMQQRLLAYCEVDEALPGRVSPKPTSPQRGKRVTEIVESKRKKE---EDLEAWLLSSMLLHEEEGPEDSSERNGIHWHGPRQLEGQRQSSSLSHQQCHPITEDGRDAKQAQ-DGGGQGEEDKGEDAT-----ESAAAAAVARLRAYEGRIQELEAKLVETEVLLSSDSGTVICGLE 251
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G02440.2 ID=NO05G02440.2|Name=NO05G02440.2|organism=Nannochloropsis oceanica|type=mRNA|length=1807bp CCGCAATCCAGCAGAAATTTCTGTGAGAGTATGGATATGGGGTATGTTGA GATCAATCAGGGGCCAGACCAGCAAGGCACTCGCGAAGTATGGCAATAAT GCGATGCAAAGAGAAGGAGCAAATCAGCAAAAGAACTTCCTTGAAGGAGA TCGATAGTGACTCTCGAGCATAGTAAGTTGTGTAATCATCTGTGTCCGAA ACTATTGTTGCGCATCAATATATACCGCCTTGGCTGGCAGCCTGTAAACA TCCCAAGCCCCATGACCATGCTATCCAACTAGTCGCCCTCTCGCCTTAGC CGGCCTTAGCCCCCCTTCGCCGACCGAGAAACACAGCAATGAAAAAGTAC GGGAGAGAGGGCTACCCACAGACACACACATGCGTGCTTACCCGGTCCTG CCCACCCTCTTGCCTTCATACATCGACAGAGAGACTACCGTACTTCGAGG CCTGGAATCCTAGCCCTCTTTCCTACTTGCACGCCCTCGCTCCTGCTCCA AGCTCACGATTCCAACCCCGCCCCCTCATTTCCTCATTACACCTGACAAC ATTCCCTTTCTCCCGGGAAATTTCCTCCAGCCCTTCGCGCCGGAGTATGC CGCCTCCACCGTCGCTCTCCTCCCCGCGACCACCATCGTCGTCAGCAGCT CACCAAGCTGACGTCTCGTCGCCTTTGCAGACGCTGGTGGAGGACCAGGC CATGCTAAGCGTCTTCTGGAGCGAATGGCGTGCGGCCGAGCACAAGTTTC TTTGTCGTGCCGAAGCTAAACACATTTCACCCGAATACAATCACTTGCCG GCCGAGACGACGCCCACAAGAAGAAGCAGCAGAAGGCGCCCACGAGCCAC GACGGTCATTACTGACCCCTTCTCCTCCTCTCGATGTGCAAGTCCAGGAC GAGCGGCAACTGCTTGTGAGGAGAACAAAGAAGGAGAGGAGGAAGAGGTG GAAGACCTGGAATCGTTGTTGCTGTCCTCTATGCTACTTTTCGAGAAGGG CACCATTTTCAACAGCAGCAGAATGCAGCAACAGCACCAGCACCAAAGAC GACACCTTTCCTCGCTCGTTCAACAAGAAAATGCTGTCTGTATGACAGAA GAGGATCGAGACGCCAAGCAAGCCGAATGTAGTGGGGTCGGGGGAGGCAA AAAAGACGAGGGGGAGGACGTGGCGGCAAGAGGGGAGGGAGCCACTGATG CTGGTGCCGCACTCGCGAGGCAGGCGGCATACGAAGCGAAGATTCAGAAG TTGGAGGCCCAGATGGTGGAGACAGAGGTGTTGTTAGGTTCGGACACGGG GACGATTATATTGGGGTTGGAGGTGAGTGAAAGGCGTGGATAGGAGTGGG GAGAGGGATGGGGTGGGAGGGCGATGGAGTTTTCTTGGTAATTTTTGAAA AGGAATTGAACTCGCGATCCACTGGGGGCGTTTTACTTCAAACGGCTGCT TACAGATACACCACACGTAACTTCTTACAGCGGGAGCTTGCCCAAACCCG TCTGGAGCTTGCGGAAATGGAGGCCGCGAAGGACGACTTGGAGGTGCAGC TGGTCAACCTGCTTCACAAAACTAGTGAGAAACGGAAGTAGGAAAGCAAG TTAAAAAAATGAACCAACGACAGGGGCTGTATTTGTGGTGGAATAAGGAG GAGGGTAGGGTGGTACGTGTGTCTTCGCGGGGATGCGGAGGGAGGAGGTT TGCCTGAGGGAGCGGACGCATGCAGTCTTCTAGACCATTTTATTTGTAGC TCTGTGCCATAAACTTGCAATTTGAAGAAGAAAATAAGAAAAGGACACAT ATACACC back to topprotein sequence of NO05G02440.2 >NO05G02440.2-protein ID=NO05G02440.2-protein|Name=NO05G02440.2|organism=Nannochloropsis oceanica|type=polypeptide|length=335bp MKKYGREGYPQTHTCVLTRSCPPSCLHTSTERLPYFEAWNPSPLSYLHAL APAPSSRFQPRPLISSLHLTTFPFSREISSSPSRRSMPPPPSLSSPRPPS SSAAHQADVSSPLQTLVEDQAMLSVFWSEWRAAEHKFLCRAEAKHISPEY NHLPAETTPTRRSSRRRPRATTVITDPFSSSRCASPGRAATACEENKEGE EEEVEDLESLLLSSMLLFEKGTIFNSSRMQQQHQHQRRHLSSLVQQENAV CMTEEDRDAKQAECSGVGGGKKDEGEDVAARGEGATDAGAALARQAAYEA KIQKLEAQMVETEVLLGSDTGTIILGLEVSERRG* back to topmRNA from alignment at chr5:650022..652063+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G02440.2 ID=NO05G02440.2|Name=NO05G02440.2|organism=Nannochloropsis oceanica|type=mRNA|length=2042bp|location=Sequence derived from alignment at chr5:650022..652063+ (Nannochloropsis oceanica) CCGCAATCCAGCAGAAATTTCTGTGAGAGTATGGATATGGGGTATGTTGA
GATCAATCAGGGGCCAGACCAGCAAGGCACTCGCGAAGTATGGCAATAAT
GCGATGCAAAGAGAAGGAGCAAATCAGCAAAAGAACTTCCTTGAAGGAGA
TCGATAGTGACTCTCGAGCATAGTAAGTTGTGTAATCATCTGTGTCCGAA
ACTATTGTTGCGCATCAATATATACCGCCTTGGCTGGCAGCCTGTAAACA
TCCCAAGCCCCATGACCATGCTATCCAACTAGTCGCCCTCTCGCCTTAGC
CGGCCTTAGCCCCCCTTCGCCGACCGAGAAACACAGCAATGAAAAAGTAC
GGGAGAGAGGGCTACCCACAGACACACACATGCGTGCTTACCCGGTCCTG
CCCACCCTCTTGCCTTCATACATCGACAGAGAGACTACCGTACTTCGAGG
CCTGGAATCCTAGCCCTCTTTCCTACTTGCACGCCCTCGCTCCTGCTCCA
AGCTCACGATTCCAACCCCGCCCCCTCATTTCCTCATTACACCTGACAAC
ATTCCCTTTCTCCCGGGAAATTTCCTCCAGCCCTTCGCGCCGGAGTATGC
CGCCTCCACCGTCGCTCTCCTCCCCGCGACCACCATCGTCGTCAGCAGCT
CACCAAGCTGACGTCTCGTCGCCTTTGCAGACGCTGGTGGAGGACCAGGC
CATGCTAAGCGTCTTCTGGAGCGAATGGCGTGCGGCCGAGCACAAGTTTC
TTTGTCGTGCCGAAGGTATGTCACGGGGGAGGAAGTCTACCGGTTTTTGA
TGTGAGAGGGAGAGGGAGGGGAGTATGCGTCTGGATGTGTGCTTGCACGC
ATGAGGGGAAAAGAGGGATGGTGCCCTGAATAAGGCCACGAGTTGCTGCA
TAGCGGAAGAGTGGAAAACAGCGTGCTTCTTAGGCTAGTCTATTAATTTC
TCACTTGTACTCATAATCCTGGAAATCTACTTCTTTCGCATCCTCAACAG
CTAAACACATTTCACCCGAATACAATCACTTGCCGGCCGAGACGACGCCC
ACAAGAAGAAGCAGCAGAAGGCGCCCACGAGCCACGACGGTCATTACTGA
CCCCTTCTCCTCCTCTCGATGTGCAAGTCCAGGACGAGCGGCAACTGCTT
GTGAGGAGAACAAAGAAGGAGAGGAGGAAGAGGTGGAAGACCTGGAATCG
TTGTTGCTGTCCTCTATGCTACTTTTCGAGAAGGGCACCATTTTCAACAG
CAGCAGAATGCAGCAACAGCACCAGCACCAAAGACGACACCTTTCCTCGC
TCGTTCAACAAGAAAATGCTGTCTGTATGACAGAAGAGGATCGAGACGCC
AAGCAAGCCGAATGTAGTGGGGTCGGGGGAGGCAAAAAAGACGAGGGGGA
GGACGTGGCGGCAAGAGGGGAGGGAGCCACTGATGCTGGTGCCGCACTCG
CGAGGCAGGCGGCATACGAAGCGAAGATTCAGAAGTTGGAGGCCCAGATG
GTGGAGACAGAGGTGTTGTTAGGTTCGGACACGGGGACGATTATATTGGG
GTTGGAGGTGAGTGAAAGGCGTGGATAGGAGTGGGGAGAGGGATGGGGTG
GGAGGGCGATGGAGTTTTCTTGGTAATTTTTGAAAAGGAATTGAACTCGC
GATCCACTGGGGGCGTTTTACTTCAAACGGCTGCTTACAGATACACCACA
CGTAACTTCTTACAGCGGGAGCTTGCCCAAACCCGTCTGGAGCTTGCGGA
AATGGAGGCCGCGAAGGACGACTTGGAGGTGCAGCTGGTCAACCTGCTTC
ACAAAACTAGTGAGAAACGGAAGTAGGAAAGCAAGTTAAAAAAATGAACC
AACGACAGGGGCTGTATTTGTGGTGGAATAAGGAGGAGGGTAGGGTGGTA
CGTGTGTCTTCGCGGGGATGCGGAGGGAGGAGGTTTGCCTGAGGGAGCGG
ACGCATGCAGTCTTCTAGACCATTTTATTTGTAGCTCTGTGCCATAAACT
TGCAATTTGAAGAAGAAAATAAGAAAAGGACACATATACACC back to topCoding sequence (CDS) from alignment at chr5:650022..652063+ >NO05G02440.2 ID=NO05G02440.2|Name=NO05G02440.2|organism=Nannochloropsis oceanica|type=CDS|length=1005bp|location=Sequence derived from alignment at chr5:650022..652063+ (Nannochloropsis oceanica) ATGAAAAAGTACGGGAGAGAGGGCTACCCACAGACACACACATGCGTGCT TACCCGGTCCTGCCCACCCTCTTGCCTTCATACATCGACAGAGAGACTAC CGTACTTCGAGGCCTGGAATCCTAGCCCTCTTTCCTACTTGCACGCCCTC GCTCCTGCTCCAAGCTCACGATTCCAACCCCGCCCCCTCATTTCCTCATT ACACCTGACAACATTCCCTTTCTCCCGGGAAATTTCCTCCAGCCCTTCGC GCCGGAGTATGCCGCCTCCACCGTCGCTCTCCTCCCCGCGACCACCATCG TCGTCAGCAGCTCACCAAGCTGACGTCTCGTCGCCTTTGCAGACGCTGGT GGAGGACCAGGCCATGCTAAGCGTCTTCTGGAGCGAATGGCGTGCGGCCG AGCACAAGTTTCTTTGTCGTGCCGAAGCTAAACACATTTCACCCGAATAC AATCACTTGCCGGCCGAGACGACGCCCACAAGAAGAAGCAGCAGAAGGCG CCCACGAGCCACGACGGTCATTACTGACCCCTTCTCCTCCTCTCGATGTG CAAGTCCAGGACGAGCGGCAACTGCTTGTGAGGAGAACAAAGAAGGAGAG GAGGAAGAGGTGGAAGACCTGGAATCGTTGTTGCTGTCCTCTATGCTACT TTTCGAGAAGGGCACCATTTTCAACAGCAGCAGAATGCAGCAACAGCACC AGCACCAAAGACGACACCTTTCCTCGCTCGTTCAACAAGAAAATGCTGTC TGTATGACAGAAGAGGATCGAGACGCCAAGCAAGCCGAATGTAGTGGGGT CGGGGGAGGCAAAAAAGACGAGGGGGAGGACGTGGCGGCAAGAGGGGAGG GAGCCACTGATGCTGGTGCCGCACTCGCGAGGCAGGCGGCATACGAAGCG AAGATTCAGAAGTTGGAGGCCCAGATGGTGGAGACAGAGGTGTTGTTAGG TTCGGACACGGGGACGATTATATTGGGGTTGGAGGTGAGTGAAAGGCGTG GATAG back to top
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