NO05G02410.1, NO05G02410.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G02410.1
Unique NameNO05G02410.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2346
Alignment locationchr5:642115..644460 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:642115..644460 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G02410.1 vs.
Match: EWM28112.1 (hypothetical protein Naga_100036g14 [Nannochloropsis gaditana])

HSP 1 Score: 526.6 bits (1355), Expect = 1.200e-145
Identity = 351/691 (50.80%), Postives = 436/691 (63.10%), Query Frame = 0 
Query:    6 DPLPLRVRWAGGGPPLLLPDLTTASTVTELECAIRFGLNLPESNVIVMLAGFPPRPLALHGKDRSSISLGGLLRPNEVVTVREHTEGEATVLQGKGTMNQKKRTARVTSSSLSSTARGKRGKTKEAGTPDAISVNAGPNIRTLHGVSGRGGGGGG-GGESAPHKRQPIHMGVSSEEDIGGLLLSSVGGGTKGGRVGQCMRAVFRKAMDKQFDEVKANARVAAAEGGRYVLEENIKGRRGDGSCARLKVTYHKGLGFQSNFEDDVELLTKTQLRGVIVSVLADHDAREMLKPGGMAGCSPRVFWSLLFHCGPKAGAGGAG-----GVEAALRRLLPGQDWGFLHVRYSRKLSEKAMENQAQAEELRREREEVARQKKERREATISRKKTREASGAAAMAAAAAAAAAAAATTTTTTTTTTTTTTTTSTAAVEGDDFEEREENKKEKRGLTSAQAATGDGKKEAEEVALVVPDDRELRAQAALARF-------CKEGRGGGEKGGREDAARAEPAGASIKDDDEDEDELDCDFPEEVSDAWVRVLRSDSFKLLTCAALAEADAEELAPRLEEHLARKTKPAAPSKPTVEEVQKWVTACQSEEMDSMMMSLANGDEDLLEALERVHVATPKDLRLWAGSVPGALLDMLEQELTDDRLKAKARECLPDLETVREMGRKAGKMMLEHAWLDLWGSE 684
            D LPLRVR   GG P+LL +LT AS++++L  A+R  L L ES   ++++GFPP+ L     DR    LG LL+PNEVVTV+E    E  VLQG G M QK R  +   +S  +     R   K   +  A+ VNAGP IRTLH  SG G GG G GGE+A  KR+ +++GVS+EED+G LLL+SVG G  GGRVG+CMRAVFRKA++K FDE KA ARVAA +GGRY  + +I+ RR DGSCARL V YHKG GFQS++ DDVELL+++QL GV+ SVLAD D REMLKP  MAGCSPRVFWSL+ H    +  GG       G EAALR L+P QDW FLH R+ RKLS+KA ENQAQ EEL+REREE AR           ++  REA GA      AA A +         +  TT+          GD  ++                  G   +EA    L    DRE RAQAA+AR         +      +  GRE   +     AS+   D +  E+D DFPEEVSDAWVRVLRS SF LL CAALA ADAEEL  RL++H A   KP APS P++ EVQ WV+ACQ++E+D MMM LA GDEDLLEA+E VHVATPKD+RLW G VPGA LDML +EL+++++ A  +  LPD+E V+ +  +A K+M E+AWL+ WGSE
Sbjct:    3 DTLPLRVRGPAGGSPVLLSNLTRASSISDLMKAVRNLLMLHESKSYILMSGFPPKTLFGDNHDRP---LGVLLQPNEVVTVKEDGGEEPRVLQGHGLMKQK-RGVKAKGASGPAKKENSRRTDKNTVSKAALVVNAGPRIRTLHRQSGNGTGGPGTGGENATRKRRRMNVGVSNEEDLGELLLASVGKGGGGGRVGRCMRAVFRKAVEKNFDEAKAAARVAAVQGGRYSAKASIEERRLDGSCARLHVLYHKGHGFQSDYRDDVELLSQSQLLGVVRSVLADVDGREMLKPANMAGCSPRVFWSLMHHFNANSIEGGGQEGLDKGTEAALRWLVPEQDWAFLHERH-RKLSDKAKENQAQEEELQREREEEAR----------RKRMWREARGAGRQRVVAADAHSKGKGRKDPASGRTTSV---------GDTIDQ-----------------AGTPCEEAVSEVL----DRERRAQAAVARSHSFHGAPAQIVEAARKAEGREGGRKEMEERASLVAVDGESGEIDSDFPEEVSDAWVRVLRSPSFMLLDCAALAGADAEELVLRLQKHHAAGAKPLAPSDPSLSEVQGWVSACQNDELDEMMMRLAGGDEDLLEAMECVHVATPKDVRLW-GMVPGAFLDMLARELSEEKM-AHVQAKLPDVEAVQVLKERAEKLMAENAWLESWGSE 646
The following BLAST results are available for this feature:
BLAST of NO05G02410.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28112.11.200e-14550.80hypothetical protein Naga_100036g14 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G02410NO05G02410Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G02410.1NO05G02410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G02410.1.cds1NO05G02410.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G02410.1 ID=NO05G02410.1|Name=NO05G02410.1|organism=Nannochloropsis oceanica|type=mRNA|length=2346bp
AAAACATAGCTGTGCTGGAAAGCTGTCCCAAGCGGGAAGCCGCCGGCCTA
CCATGGCAATGACGCCGGACCCATTGCCTTTGCGTGTACGTTGGGCAGGA
GGTGGCCCGCCGCTTCTGCTTCCAGACCTGACCACGGCCTCCACCGTTAC
TGAGCTCGAATGCGCCATCCGCTTCGGCCTAAACTTGCCCGAGTCTAATG
TTATTGTCATGCTGGCCGGCTTTCCCCCGCGCCCGCTTGCTTTACACGGG
AAAGATCGAAGCAGCATTTCCTTGGGAGGGTTGCTGCGTCCTAACGAGGT
CGTGACGGTACGGGAACACACGGAAGGGGAGGCTACAGTGCTGCAAGGCA
AAGGTACTATGAATCAGAAGAAAAGGACTGCTCGTGTCACGTCCTCGTCT
TTATCTTCGACTGCCCGAGGAAAACGTGGGAAGACAAAGGAAGCTGGGAC
GCCTGATGCAATTTCGGTCAATGCGGGTCCCAACATACGTACACTCCATG
GTGTTAGTGGCCGTGGTGGTGGTGGTGGTGGAGGTGGAGAAAGCGCACCT
CATAAGCGACAGCCTATACATATGGGCGTGTCGAGCGAAGAGGACATTGG
AGGTTTGTTGCTTTCTTCTGTAGGAGGAGGGACAAAGGGAGGGAGGGTTG
GGCAGTGCATGCGCGCTGTGTTCCGAAAGGCCATGGACAAGCAGTTCGAC
GAAGTCAAAGCAAATGCCCGGGTGGCTGCGGCAGAAGGAGGGCGATATGT
CCTGGAAGAGAACATTAAAGGGCGGCGGGGGGATGGATCATGTGCGCGGT
TGAAGGTGACTTACCACAAGGGGCTCGGGTTTCAGAGTAATTTCGAGGAT
GATGTGGAGCTGCTGACTAAGACGCAGTTGCGGGGGGTGATAGTGTCAGT
GCTGGCGGACCATGACGCAAGGGAGATGCTGAAGCCGGGGGGAATGGCGG
GTTGTAGTCCCAGGGTTTTCTGGTCATTGCTGTTCCACTGTGGTCCTAAA
GCTGGTGCTGGCGGTGCTGGTGGGGTCGAGGCAGCGTTGCGTCGGTTACT
TCCCGGGCAAGATTGGGGGTTTCTGCATGTGCGATACTCGAGAAAGTTGA
GTGAGAAGGCAATGGAGAACCAAGCCCAGGCAGAAGAGTTAAGACGGGAG
AGAGAGGAGGTGGCGCGACAGAAGAAGGAGCGAAGGGAGGCGACGATATC
GAGGAAGAAAACACGAGAAGCATCTGGGGCAGCGGCGATGGCGGCAGCGG
CAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACATCAACAGCAGCGGTGGAAGGAGATGA
TTTTGAGGAACGGGAGGAGAATAAGAAGGAGAAGAGGGGTTTGACTTCAG
CACAAGCGGCGACGGGGGACGGGAAGAAGGAAGCGGAGGAGGTCGCGCTT
GTTGTACCGGATGACCGGGAACTGCGAGCACAAGCGGCATTGGCTCGGTT
TTGTAAAGAGGGAAGAGGGGGAGGAGAAAAGGGGGGAAGAGAAGATGCAG
CAAGAGCAGAACCAGCAGGTGCCTCCATCAAGGACGATGACGAGGACGAG
GACGAGTTAGACTGCGATTTCCCCGAAGAGGTATCTGATGCCTGGGTTAG
AGTGCTGCGAAGCGATTCCTTCAAACTACTTACCTGTGCAGCTTTAGCAG
AAGCAGACGCCGAAGAATTGGCCCCAAGACTGGAGGAGCACTTGGCGCGT
AAAACCAAGCCAGCGGCACCGAGTAAGCCGACAGTTGAGGAAGTCCAAAA
GTGGGTGACAGCGTGCCAGAGCGAAGAGATGGACAGCATGATGATGTCTC
TGGCGAATGGGGACGAGGATTTGCTCGAAGCCTTGGAGCGTGTGCACGTG
GCGACGCCGAAGGATTTGAGGTTGTGGGCCGGGAGTGTCCCCGGGGCGCT
GCTCGACATGCTGGAGCAGGAATTGACAGACGATAGGTTGAAGGCGAAGG
CGAGGGAATGTTTGCCGGACCTGGAGACCGTGAGGGAAATGGGCCGGAAG
GCGGGGAAAATGATGCTGGAGCATGCGTGGTTGGACTTGTGGGGTAGTGA
GTAGGTAGGCAGGGAAGGAGGGACGGAGGGAGGGAGAACAAGGTGTGTGA
ATATGCAAATTTACCGGTAGGCAGAGGTAAAATAGACTGGAAATGTAGAC
AGGCATGCGGTAAGGAAGGCAGGCAAAGAGTAGATAAGGGAAGAAGAGAG
AGAGGTTGTGTGTGTGAAAGAAACAGAGTGAAAGAGAAAAAGAGATATAG
AAGGAGAGATATAATGCGGAAAAGCAGAAATAAAACTAAAAAGATG
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protein sequence of NO05G02410.1

>NO05G02410.1-protein ID=NO05G02410.1-protein|Name=NO05G02410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=684bp
MAMTPDPLPLRVRWAGGGPPLLLPDLTTASTVTELECAIRFGLNLPESNV
IVMLAGFPPRPLALHGKDRSSISLGGLLRPNEVVTVREHTEGEATVLQGK
GTMNQKKRTARVTSSSLSSTARGKRGKTKEAGTPDAISVNAGPNIRTLHG
VSGRGGGGGGGGESAPHKRQPIHMGVSSEEDIGGLLLSSVGGGTKGGRVG
QCMRAVFRKAMDKQFDEVKANARVAAAEGGRYVLEENIKGRRGDGSCARL
KVTYHKGLGFQSNFEDDVELLTKTQLRGVIVSVLADHDAREMLKPGGMAG
CSPRVFWSLLFHCGPKAGAGGAGGVEAALRRLLPGQDWGFLHVRYSRKLS
EKAMENQAQAEELRREREEVARQKKERREATISRKKTREASGAAAMAAAA
AAAAAAAATTTTTTTTTTTTTTTTSTAAVEGDDFEEREENKKEKRGLTSA
QAATGDGKKEAEEVALVVPDDRELRAQAALARFCKEGRGGGEKGGREDAA
RAEPAGASIKDDDEDEDELDCDFPEEVSDAWVRVLRSDSFKLLTCAALAE
ADAEELAPRLEEHLARKTKPAAPSKPTVEEVQKWVTACQSEEMDSMMMSL
ANGDEDLLEALERVHVATPKDLRLWAGSVPGALLDMLEQELTDDRLKAKA
RECLPDLETVREMGRKAGKMMLEHAWLDLWGSE*
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mRNA from alignment at chr5:642115..644460+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G02410.1 ID=NO05G02410.1|Name=NO05G02410.1|organism=Nannochloropsis oceanica|type=mRNA|length=2346bp|location=Sequence derived from alignment at chr5:642115..644460+ (Nannochloropsis oceanica)
AAAACATAGCTGTGCTGGAAAGCTGTCCCAAGCGGGAAGCCGCCGGCCTA
CCATGGCAATGACGCCGGACCCATTGCCTTTGCGTGTACGTTGGGCAGGA
GGTGGCCCGCCGCTTCTGCTTCCAGACCTGACCACGGCCTCCACCGTTAC
TGAGCTCGAATGCGCCATCCGCTTCGGCCTAAACTTGCCCGAGTCTAATG
TTATTGTCATGCTGGCCGGCTTTCCCCCGCGCCCGCTTGCTTTACACGGG
AAAGATCGAAGCAGCATTTCCTTGGGAGGGTTGCTGCGTCCTAACGAGGT
CGTGACGGTACGGGAACACACGGAAGGGGAGGCTACAGTGCTGCAAGGCA
AAGGTACTATGAATCAGAAGAAAAGGACTGCTCGTGTCACGTCCTCGTCT
TTATCTTCGACTGCCCGAGGAAAACGTGGGAAGACAAAGGAAGCTGGGAC
GCCTGATGCAATTTCGGTCAATGCGGGTCCCAACATACGTACACTCCATG
GTGTTAGTGGCCGTGGTGGTGGTGGTGGTGGAGGTGGAGAAAGCGCACCT
CATAAGCGACAGCCTATACATATGGGCGTGTCGAGCGAAGAGGACATTGG
AGGTTTGTTGCTTTCTTCTGTAGGAGGAGGGACAAAGGGAGGGAGGGTTG
GGCAGTGCATGCGCGCTGTGTTCCGAAAGGCCATGGACAAGCAGTTCGAC
GAAGTCAAAGCAAATGCCCGGGTGGCTGCGGCAGAAGGAGGGCGATATGT
CCTGGAAGAGAACATTAAAGGGCGGCGGGGGGATGGATCATGTGCGCGGT
TGAAGGTGACTTACCACAAGGGGCTCGGGTTTCAGAGTAATTTCGAGGAT
GATGTGGAGCTGCTGACTAAGACGCAGTTGCGGGGGGTGATAGTGTCAGT
GCTGGCGGACCATGACGCAAGGGAGATGCTGAAGCCGGGGGGAATGGCGG
GTTGTAGTCCCAGGGTTTTCTGGTCATTGCTGTTCCACTGTGGTCCTAAA
GCTGGTGCTGGCGGTGCTGGTGGGGTCGAGGCAGCGTTGCGTCGGTTACT
TCCCGGGCAAGATTGGGGGTTTCTGCATGTGCGATACTCGAGAAAGTTGA
GTGAGAAGGCAATGGAGAACCAAGCCCAGGCAGAAGAGTTAAGACGGGAG
AGAGAGGAGGTGGCGCGACAGAAGAAGGAGCGAAGGGAGGCGACGATATC
GAGGAAGAAAACACGAGAAGCATCTGGGGCAGCGGCGATGGCGGCAGCGG
CAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACATCAACAGCAGCGGTGGAAGGAGATGA
TTTTGAGGAACGGGAGGAGAATAAGAAGGAGAAGAGGGGTTTGACTTCAG
CACAAGCGGCGACGGGGGACGGGAAGAAGGAAGCGGAGGAGGTCGCGCTT
GTTGTACCGGATGACCGGGAACTGCGAGCACAAGCGGCATTGGCTCGGTT
TTGTAAAGAGGGAAGAGGGGGAGGAGAAAAGGGGGGAAGAGAAGATGCAG
CAAGAGCAGAACCAGCAGGTGCCTCCATCAAGGACGATGACGAGGACGAG
GACGAGTTAGACTGCGATTTCCCCGAAGAGGTATCTGATGCCTGGGTTAG
AGTGCTGCGAAGCGATTCCTTCAAACTACTTACCTGTGCAGCTTTAGCAG
AAGCAGACGCCGAAGAATTGGCCCCAAGACTGGAGGAGCACTTGGCGCGT
AAAACCAAGCCAGCGGCACCGAGTAAGCCGACAGTTGAGGAAGTCCAAAA
GTGGGTGACAGCGTGCCAGAGCGAAGAGATGGACAGCATGATGATGTCTC
TGGCGAATGGGGACGAGGATTTGCTCGAAGCCTTGGAGCGTGTGCACGTG
GCGACGCCGAAGGATTTGAGGTTGTGGGCCGGGAGTGTCCCCGGGGCGCT
GCTCGACATGCTGGAGCAGGAATTGACAGACGATAGGTTGAAGGCGAAGG
CGAGGGAATGTTTGCCGGACCTGGAGACCGTGAGGGAAATGGGCCGGAAG
GCGGGGAAAATGATGCTGGAGCATGCGTGGTTGGACTTGTGGGGTAGTGA
GTAGGTAGGCAGGGAAGGAGGGACGGAGGGAGGGAGAACAAGGTGTGTGA
ATATGCAAATTTACCGGTAGGCAGAGGTAAAATAGACTGGAAATGTAGAC
AGGCATGCGGTAAGGAAGGCAGGCAAAGAGTAGATAAGGGAAGAAGAGAG
AGAGGTTGTGTGTGTGAAAGAAACAGAGTGAAAGAGAAAAAGAGATATAG
AAGGAGAGATATAATGCGGAAAAGCAGAAATAAAACTAAAAAGATG
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Coding sequence (CDS) from alignment at chr5:642115..644460+

>NO05G02410.1 ID=NO05G02410.1|Name=NO05G02410.1|organism=Nannochloropsis oceanica|type=CDS|length=2052bp|location=Sequence derived from alignment at chr5:642115..644460+ (Nannochloropsis oceanica)
ATGGCAATGACGCCGGACCCATTGCCTTTGCGTGTACGTTGGGCAGGAGG
TGGCCCGCCGCTTCTGCTTCCAGACCTGACCACGGCCTCCACCGTTACTG
AGCTCGAATGCGCCATCCGCTTCGGCCTAAACTTGCCCGAGTCTAATGTT
ATTGTCATGCTGGCCGGCTTTCCCCCGCGCCCGCTTGCTTTACACGGGAA
AGATCGAAGCAGCATTTCCTTGGGAGGGTTGCTGCGTCCTAACGAGGTCG
TGACGGTACGGGAACACACGGAAGGGGAGGCTACAGTGCTGCAAGGCAAA
GGTACTATGAATCAGAAGAAAAGGACTGCTCGTGTCACGTCCTCGTCTTT
ATCTTCGACTGCCCGAGGAAAACGTGGGAAGACAAAGGAAGCTGGGACGC
CTGATGCAATTTCGGTCAATGCGGGTCCCAACATACGTACACTCCATGGT
GTTAGTGGCCGTGGTGGTGGTGGTGGTGGAGGTGGAGAAAGCGCACCTCA
TAAGCGACAGCCTATACATATGGGCGTGTCGAGCGAAGAGGACATTGGAG
GTTTGTTGCTTTCTTCTGTAGGAGGAGGGACAAAGGGAGGGAGGGTTGGG
CAGTGCATGCGCGCTGTGTTCCGAAAGGCCATGGACAAGCAGTTCGACGA
AGTCAAAGCAAATGCCCGGGTGGCTGCGGCAGAAGGAGGGCGATATGTCC
TGGAAGAGAACATTAAAGGGCGGCGGGGGGATGGATCATGTGCGCGGTTG
AAGGTGACTTACCACAAGGGGCTCGGGTTTCAGAGTAATTTCGAGGATGA
TGTGGAGCTGCTGACTAAGACGCAGTTGCGGGGGGTGATAGTGTCAGTGC
TGGCGGACCATGACGCAAGGGAGATGCTGAAGCCGGGGGGAATGGCGGGT
TGTAGTCCCAGGGTTTTCTGGTCATTGCTGTTCCACTGTGGTCCTAAAGC
TGGTGCTGGCGGTGCTGGTGGGGTCGAGGCAGCGTTGCGTCGGTTACTTC
CCGGGCAAGATTGGGGGTTTCTGCATGTGCGATACTCGAGAAAGTTGAGT
GAGAAGGCAATGGAGAACCAAGCCCAGGCAGAAGAGTTAAGACGGGAGAG
AGAGGAGGTGGCGCGACAGAAGAAGGAGCGAAGGGAGGCGACGATATCGA
GGAAGAAAACACGAGAAGCATCTGGGGCAGCGGCGATGGCGGCAGCGGCA
GCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACATCAACAGCAGCGGTGGAAGGAGATGATT
TTGAGGAACGGGAGGAGAATAAGAAGGAGAAGAGGGGTTTGACTTCAGCA
CAAGCGGCGACGGGGGACGGGAAGAAGGAAGCGGAGGAGGTCGCGCTTGT
TGTACCGGATGACCGGGAACTGCGAGCACAAGCGGCATTGGCTCGGTTTT
GTAAAGAGGGAAGAGGGGGAGGAGAAAAGGGGGGAAGAGAAGATGCAGCA
AGAGCAGAACCAGCAGGTGCCTCCATCAAGGACGATGACGAGGACGAGGA
CGAGTTAGACTGCGATTTCCCCGAAGAGGTATCTGATGCCTGGGTTAGAG
TGCTGCGAAGCGATTCCTTCAAACTACTTACCTGTGCAGCTTTAGCAGAA
GCAGACGCCGAAGAATTGGCCCCAAGACTGGAGGAGCACTTGGCGCGTAA
AACCAAGCCAGCGGCACCGAGTAAGCCGACAGTTGAGGAAGTCCAAAAGT
GGGTGACAGCGTGCCAGAGCGAAGAGATGGACAGCATGATGATGTCTCTG
GCGAATGGGGACGAGGATTTGCTCGAAGCCTTGGAGCGTGTGCACGTGGC
GACGCCGAAGGATTTGAGGTTGTGGGCCGGGAGTGTCCCCGGGGCGCTGC
TCGACATGCTGGAGCAGGAATTGACAGACGATAGGTTGAAGGCGAAGGCG
AGGGAATGTTTGCCGGACCTGGAGACCGTGAGGGAAATGGGCCGGAAGGC
GGGGAAAATGATGCTGGAGCATGCGTGGTTGGACTTGTGGGGTAGTGAGT
AG
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Synonyms
Publications