NO05G02390.1, NO05G02390.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G02390.1
Unique NameNO05G02390.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2816
Alignment locationchr5:636804..639920 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:636804..639920 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO05G02390.1 vs.
Match: EWM28110.1 (ribosomal protein l11 methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 434.9 bits (1117), Expect = 3.000e-118
Identity = 243/430 (56.51%), Postives = 302/430 (70.23%), Query Frame = 0
Query:   30 LFSAISQAFILPPPCHSSFATPSTDYHQSRRSNLQPLPNTAAAEATVVEGGAANQE--SDRQFTVKIKRRLKEQQHYRVTFVKEIKELGELTDALIEQGALEVSYFTAEPLSFSLTLPVEG-TIE-----VEAIMHLAW----TMIERQQAHERSGGSSSSSSSSSSSTLLGWKYEKEIVLNAMNWFKAAAEPGFSPVSVGRFQVVPVQSYHDPPPLS------AKPEEQQQQLCILPGEGWGDGSHPSTHLCLDFLSQEGVICGGERVIDYGTGSGILSIAAVQIGAREAVGIDVCYDALASAKANVLLNGVDQEVELIHPREVVPGEFIPGDVVIANILVGTLLAMRNTIMGAVKPGGWLVLSGLRPEQVEVIKKKYGKNVQWEEGLEKVEEVRNPTFGTGAGLWVRLVGRRVHAERWVDMLSEAAVS 442
            L S +S      P  HS  +  S  YH SR++  +    +  ++ T  +  A   E  +D++FT   K  LKEQ+ + VTF    ++L EL+D LIE GALEVS       SF+LT+ ++G ++E     +E +MH A      ++E  +A  RS  S              W YE+E VLNA+NW KAA + GF PV+VGRFQVVPVQ+Y++ P         ++P     Q+ ILPGEGWGDG HP+T LCLDFLSQEG++CGGERV+DYG GSGILSIAAVQ+GAREAVGIDVCYDALASA  NV LNGV+QEVEL+HPREVVPG+F+PGD+V+ANILVGTL+AM NTI+GAV+ GGWLVLSGLRPEQVEVIK+KYG +V+W+E LE+ EEV NPTFGTGAGLWVRLVGRRV  +RWV+ LSEAAVS
Sbjct:   10 LASILSTGCAFQPLVHSPLSYSS--YHGSRQTFGKCNAASFISDVTEKDRAALEAEKLADQEFTRAAKSLLKEQKKFCVTFDSNFEKLSELSDELIECGALEVSLDPMNLKSFALTVDMKGKSLEDSSRALENLMHSALGALPQLLECNEAENRSHPS--------------WSYEEERVLNAVNWQKAAIQEGFPPVNVGRFQVVPVQTYYELPLRPQDSYQPSQPPRGTHQVRILPGEGWGDGHHPTTMLCLDFLSQEGIVCGGERVVDYGCGSGILSIAAVQLGAREAVGIDVCYDALASATTNVRLNGVEQEVELLHPREVVPGDFVPGDIVLANILVGTLMAMSNTILGAVREGGWLVLSGLRPEQVEVIKRKYGDHVRWDESLERAEEVENPTFGTGAGLWVRLVGRRVLGDRWVEALSEAAVS 423          
The following BLAST results are available for this feature:
BLAST of NO05G02390.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28110.13.000e-11856.51ribosomal protein l11 methyltransferase [Nannochlo... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G02390NO05G02390Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G02390.1NO05G02390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G02390.1.cds1NO05G02390.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02390.1.cds2NO05G02390.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G02390.1 ID=NO05G02390.1|Name=NO05G02390.1|organism=Nannochloropsis oceanica|type=mRNA|length=2816bp
TCTCTAAGTACACTCACTATTTCTTTCTGAAATATTAAAGCATTGAACTT
CATACAGTATTACCGCCTTTCTATTTCTTGTTCGGCATGCGCGTCTCCTA
GCAGTGCATTTAGCCGAAGTCCCTCCTGACGCTATTCTATAAATATAAAC
CCAGCATCGAACTAGATTTCGCAAGTTATAACCCCCGCATCATTTCCACC
TTCAATCTCCTAATGTGGTCGGTGGCAGCAGCCGAGTAAAGCGTTTCACG
ATATCGAGGTTCCTGGTGTACGCTTTGTACTTCCTTCGAAGGAAGCGTAT
CCTTGCAGCTAATTTTACCGCATTGGCAATCAGAACATTATTCGGCACAC
ACGAAACAAACAAACTATGTCTTGGTACCGCAGGTTTGGTCTTTGAGTAC
CCTCAGCTCCGTGGTCGTGAGGTTCCCCCGCTCCGCTTCTCCGATGCCTC
AATTTTACTGGAATTAACCAGCATTAATAAGCTGAAAAGGTACACGTGGG
CAAAGCGGGAAGGCCCATGAGACCGAAAATGACGCGACGAGGACGTCCAG
GTCCGGCGTTCGCGAGAACTGCCAAGGGCGTGAAACACGTGACAGGTAGC
GTAGCTCCGTGTTTAACCTTCGCTTTCATGGCGCCCCGATGGTTGAGTGC
TTGCCACTATTGGCAGCAGGTAAGCTAGCGATGAAATGTTGTATCGCTCC
ACCAATTGTTGCTTCCGCAAACACAATAAATGGCACACAATAAATGTGAT
TAGGACGATGTACTGGAGGACAAGTCAGAGAGGTGTGATCGGCGCAAAAA
ATGCATCTTTCGATAAACATAACCATGATCCGCTTCGATACCACGAAAAA
AGAATGAGCTTAGATCAGCCATTCGAAAGTAGAGTCCCTCTAGGTTACAG
TAGATTAGCCATTCGAAAGTAAATTCCCTTTAGGGCACAGGAGAGGATGA
GTTTGCCCACCGCCGCCGGAAAATGCAAGTCGGTGAGAGCTTGCAGTGCG
CGGGTTCAGGCCTTTCATTGAAGCCTACAGTGAGTTTACTGCTGTCGTGG
TGTTTGATGACTGGCGCGTTCCGGTCTTGAACGACTTCGTGCACGAACAC
ACTGGCAGAACGCGAAAACGACTTTCACAAGTGAGAGCAGCCCTGTCAGC
TGACCCCTGAAACCTCGGAAACCCCGTTCCCATTGGACAACACGGTGACT
TTAAGAGATAATCAAGAAGTTACGGGACACCTGAGAGACATGAATTGATT
AAGAGTAATGAGAGGGAAAAAATGACCTTTTCGCATATCAAAATCCACCC
GGGGAAAACTCTATCTCGCGGCGGCGAAATCCAGCCCCTCCCTCGGCCTT
GGGACACTCAACTTCACTCTTTCCTCAAACAAAAATTTCCAAAGCATACA
TTTTACAGCACCTATGGATTCCAAGTCTCCGATAAATCGACATCGACCAA
GACAATGCCGACAGCAAAGGTACCGCTTGATAATTTCCAGCATGCTCAGC
CTTTTCAGCGCTATCTCTCAGGCTTTCATCCTACCTCCACCATGTCATTC
TTCTTTCGCCACCCCCTCCACCGACTATCACCAAAGCCGACGATCCAATC
TACAACCTCTACCCAATACTGCCGCTGCCGAAGCTACGGTTGTCGAAGGG
GGCGCCGCGAATCAAGAGTCAGATCGACAGTTCACAGTCAAAATAAAAAG
GCGTTTGAAAGAGCAACAACATTATCGGGTCACCTTTGTGAAAGAGATCA
AGGAGCTCGGGGAACTTACAGATGCCTTAATTGAGCAAGGCGCGCTGGAA
GTGTCCTATTTTACGGCAGAGCCGCTCTCCTTCAGTCTCACACTGCCCGT
CGAGGGAACAATTGAAGTAGAAGCAATCATGCATCTGGCTTGGACCATGA
TTGAGCGCCAACAAGCGCATGAACGAAGCGGCGGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCACTCTACTCGGGTGGAAATACGAAAAAGAAAT
TGTTCTTAATGCCATGAATTGGTTCAAAGCTGCTGCAGAGCCTGGATTCA
GCCCCGTCAGTGTTGGTCGTTTCCAAGTCGTGCCCGTCCAAAGCTACCAC
GATCCTCCACCACTTTCCGCTAAGCCCGAAGAGCAGCAGCAGCAGTTGTG
CATTCTGCCAGGCGAGGGTTGGGGGGACGGCTCCCATCCATCTACACATT
TGTGCCTTGATTTTTTGAGTCAGGAGGGTGTGATTTGTGGAGGGGAGAGG
GTTATAGACTATGGCACCGGGAGCGGCATTTTATCAATTGCTGCTGTGCA
GATCGGGGCGAGGGAAGCGGTGGGAATTGATGTGTGTTACGATGCTTTGG
CCTCTGCCAAAGCAAACGTGCTGCTTAATGGTGTGGATCAAGAAGTAGAG
CTGATTCATCCTCGGGAGGTGGTACCCGGAGAGTTTATTCCTGGCGATGT
GGTAATTGCGAATATTTTAGTGGGGACATTGCTGGCGATGAGAAACACGA
TTATGGGGGCGGTAAAGCCTGGGGGATGGTTGGTCTTGTCGGGTTTGAGG
CCTGAGCAGGTGGAGGTAATCAAGAAGAAGTATGGAAAGAATGTGCAGTG
GGAGGAGGGGCTAGAGAAGGTGGAGGAGGTGAGGAACCCGACGTTTGGGA
CGGGGGCGGGCCTCTGGGTTAGACTGGTGGGACGGAGGGTCCATGCCGAA
CGCTGGGTCGATATGTTAAGTGAAGCAGCGGTGTCGTAACTAAATGGAGG
ATGAAATAATGATAAAAGATGATGAGATGAGAGTAGACGCAACATAAAAA
GAGATCGAGTAGGAAA
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protein sequence of NO05G02390.1

>NO05G02390.1-protein ID=NO05G02390.1-protein|Name=NO05G02390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=442bp
MDSKSPINRHRPRQCRQQRYRLIISSMLSLFSAISQAFILPPPCHSSFAT
PSTDYHQSRRSNLQPLPNTAAAEATVVEGGAANQESDRQFTVKIKRRLKE
QQHYRVTFVKEIKELGELTDALIEQGALEVSYFTAEPLSFSLTLPVEGTI
EVEAIMHLAWTMIERQQAHERSGGSSSSSSSSSSSTLLGWKYEKEIVLNA
MNWFKAAAEPGFSPVSVGRFQVVPVQSYHDPPPLSAKPEEQQQQLCILPG
EGWGDGSHPSTHLCLDFLSQEGVICGGERVIDYGTGSGILSIAAVQIGAR
EAVGIDVCYDALASAKANVLLNGVDQEVELIHPREVVPGEFIPGDVVIAN
ILVGTLLAMRNTIMGAVKPGGWLVLSGLRPEQVEVIKKKYGKNVQWEEGL
EKVEEVRNPTFGTGAGLWVRLVGRRVHAERWVDMLSEAAVS*
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mRNA from alignment at chr5:636804..639920+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G02390.1 ID=NO05G02390.1|Name=NO05G02390.1|organism=Nannochloropsis oceanica|type=mRNA|length=3117bp|location=Sequence derived from alignment at chr5:636804..639920+ (Nannochloropsis oceanica)
TCTCTAAGTACACTCACTATTTCTTTCTGAAATATTAAAGCATTGAACTT CATACAGTATTACCGCCTTTCTATTTCTTGTTCGGCATGCGCGTCTCCTA GCAGTGCATTTAGCCGAAGTCCCTCCTGACGCTATTCTATAAATATAAAC CCAGCATCGAACTAGATTTCGCAAGTTATAACCCCCGCATCATTTCCACC TTCAATCTCCTAATGTGGTCGGTGGCAGCAGCCGAGTAAAGCGTTTCACG ATATCGAGGTTCCTGGTGTACGCTTTGTACTTCCTTCGAAGGAAGCGTAT CCTTGCAGCTAATTTTACCGCATTGGCAATCAGAACATTATTCGGCACAC ACGAAACAAACAAACTATGTCTTGGTACCGCAGGTTTGGTCTTTGAGTAC CCTCAGCTCCGTGGTCGTGAGGTTCCCCCGCTCCGCTTCTCCGATGCCTC AATTTTACTGGAATTAACCAGCATTAATAAGCTGAAAAGGTACACGTGGG CAAAGCGGGAAGGCCCATGAGACCGAAAATGACGCGACGAGGACGTCCAG GTCCGGCGTTCGCGAGAACTGCCAAGGGCGTGAAACACGTGACAGGTAGC GTAGCTCCGTGTTTAACCTTCGCTTTCATGGCGCCCCGATGGTTGAGTGC TTGCCACTATTGGCAGCAGGTAAGCTAGCGATGAAATGTTGTATCGCTCC ACCAATTGTTGCTTCCGCAAACACAATAAATGGCACACAATAAATGTGAT TAGGACGATGTACTGGAGGACAAGTCAGAGAGGTGTGATCGGCGCAAAAA ATGCATCTTTCGATAAACATAACCATGATCCGCTTCGATACCACGAAAAA AGAATGAGCTTAGATCAGCCATTCGAAAGTAGAGTCCCTCTAGGTTACAG TAGATTAGCCATTCGAAAGTAAATTCCCTTTAGGGCACAGGAGAGGATGA GTTTGCCCACCGCCGCCGGAAAATGCAAGTCGGTGAGAGCTTGCAGTGCG CGGGTTCAGGCCTTTCATTGAAGCCTACAGTGAGTTTACTGCTGTCGTGG TGTTTGATGACTGGCGCGTTCCGGTCTTGAACGACTTCGTGCACGAACAC ACTGGCAGAACGCGAAAACGACTTTCACAAGTGAGAGCAGCCCTGTCAGC TGACCCCTGAAACCTCGGAAACCCCGTTCCCATTGGACAACACGGTGACT TTAAGAGATAATCAAGAAGTTACGGGACACCTGAGAGACATGAATTGATT AAGAGTAATGAGAGGGAAAAAATGACCTTTTCGCATATCAAAATCCACCC GGGGAAAACTCTATCTCGCGGCGGCGAAATCCAGCCCCTCCCTCGGCCTT GGGACACTCAACTTCACTCTTTCCTCAAACAAAAATTTCCAAAGCATACA TTTTACAGCACCTATGGATTCCAAGTCTCCGATAAATCGACATCGACCAA GACAATGCCGACAGCAAAGGTACCGCTTGATAATTTCCAGGTGAGTCGTG GCTTTCGCCTGGCGTCCTACCCTGTGCTTCCTGGCTCGCAAGCCTTGGGA CAATAGCGTGAATATATGATTTCGTCCGCAGACTCCAGAGGACGCGGTCC CCAACATGTCTACAAGGAGGTTGAATTCACAATACTGCCGCGCTCGATAT CTTATCTTGACAAATCTTGGATCGTGGCGACCATTTTCTCTTTTTGACTG GCGTTCTGGTGCTTTCTTTGATATCCCCTATCTTGATCTCACCGATGTTT TACAATCTTGTCCCCCCGACTTTCTCCCAACTCCTCCACAGCATGCTCAG CCTTTTCAGCGCTATCTCTCAGGCTTTCATCCTACCTCCACCATGTCATT CTTCTTTCGCCACCCCCTCCACCGACTATCACCAAAGCCGACGATCCAAT CTACAACCTCTACCCAATACTGCCGCTGCCGAAGCTACGGTTGTCGAAGG GGGCGCCGCGAATCAAGAGTCAGATCGACAGTTCACAGTCAAAATAAAAA GGCGTTTGAAAGAGCAACAACATTATCGGGTCACCTTTGTGAAAGAGATC AAGGAGCTCGGGGAACTTACAGATGCCTTAATTGAGCAAGGCGCGCTGGA AGTGTCCTATTTTACGGCAGAGCCGCTCTCCTTCAGTCTCACACTGCCCG TCGAGGGAACAATTGAAGTAGAAGCAATCATGCATCTGGCTTGGACCATG ATTGAGCGCCAACAAGCGCATGAACGAAGCGGCGGCAGCAGCAGCAGCAG CAGCAGCAGCAGCAGCAGCACTCTACTCGGGTGGAAATACGAAAAAGAAA TTGTTCTTAATGCCATGAATTGGTTCAAAGCTGCTGCAGAGCCTGGATTC AGCCCCGTCAGTGTTGGTCGTTTCCAAGTCGTGCCCGTCCAAAGCTACCA CGATCCTCCACCACTTTCCGCTAAGCCCGAAGAGCAGCAGCAGCAGTTGT GCATTCTGCCAGGCGAGGGTTGGGGGGACGGCTCCCATCCATCTACACAT TTGTGCCTTGATTTTTTGAGTCAGGAGGGTGTGATTTGTGGAGGGGAGAG GGTTATAGACTATGGCACCGGGAGCGGCATTTTATCAATTGCTGCTGTGC AGATCGGGGCGAGGGAAGCGGTGGGAATTGATGTGTGTTACGATGCTTTG GCCTCTGCCAAAGCAAACGTGCTGCTTAATGGTGTGGATCAAGAAGTAGA GCTGATTCATCCTCGGGAGGTGGTACCCGGAGAGTTTATTCCTGGCGATG TGGTAATTGCGAATATTTTAGTGGGGACATTGCTGGCGATGAGAAACACG ATTATGGGGGCGGTAAAGCCTGGGGGATGGTTGGTCTTGTCGGGTTTGAG GCCTGAGCAGGTGGAGGTAATCAAGAAGAAGTATGGAAAGAATGTGCAGT GGGAGGAGGGGCTAGAGAAGGTGGAGGAGGTGAGGAACCCGACGTTTGGG ACGGGGGCGGGCCTCTGGGTTAGACTGGTGGGACGGAGGGTCCATGCCGA ACGCTGGGTCGATATGTTAAGTGAAGCAGCGGTGTCGTAACTAAATGGAG GATGAAATAATGATAAAAGATGATGAGATGAGAGTAGACGCAACATAAAA AGAGATCGAGTAGGAAA
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Coding sequence (CDS) from alignment at chr5:636804..639920+

>NO05G02390.1 ID=NO05G02390.1|Name=NO05G02390.1|organism=Nannochloropsis oceanica|type=CDS|length=1326bp|location=Sequence derived from alignment at chr5:636804..639920+ (Nannochloropsis oceanica)
ATGGATTCCAAGTCTCCGATAAATCGACATCGACCAAGACAATGCCGACA
GCAAAGGTACCGCTTGATAATTTCCAGCATGCTCAGCCTTTTCAGCGCTA
TCTCTCAGGCTTTCATCCTACCTCCACCATGTCATTCTTCTTTCGCCACC
CCCTCCACCGACTATCACCAAAGCCGACGATCCAATCTACAACCTCTACC
CAATACTGCCGCTGCCGAAGCTACGGTTGTCGAAGGGGGCGCCGCGAATC
AAGAGTCAGATCGACAGTTCACAGTCAAAATAAAAAGGCGTTTGAAAGAG
CAACAACATTATCGGGTCACCTTTGTGAAAGAGATCAAGGAGCTCGGGGA
ACTTACAGATGCCTTAATTGAGCAAGGCGCGCTGGAAGTGTCCTATTTTA
CGGCAGAGCCGCTCTCCTTCAGTCTCACACTGCCCGTCGAGGGAACAATT
GAAGTAGAAGCAATCATGCATCTGGCTTGGACCATGATTGAGCGCCAACA
AGCGCATGAACGAAGCGGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCACTCTACTCGGGTGGAAATACGAAAAAGAAATTGTTCTTAATGCC
ATGAATTGGTTCAAAGCTGCTGCAGAGCCTGGATTCAGCCCCGTCAGTGT
TGGTCGTTTCCAAGTCGTGCCCGTCCAAAGCTACCACGATCCTCCACCAC
TTTCCGCTAAGCCCGAAGAGCAGCAGCAGCAGTTGTGCATTCTGCCAGGC
GAGGGTTGGGGGGACGGCTCCCATCCATCTACACATTTGTGCCTTGATTT
TTTGAGTCAGGAGGGTGTGATTTGTGGAGGGGAGAGGGTTATAGACTATG
GCACCGGGAGCGGCATTTTATCAATTGCTGCTGTGCAGATCGGGGCGAGG
GAAGCGGTGGGAATTGATGTGTGTTACGATGCTTTGGCCTCTGCCAAAGC
AAACGTGCTGCTTAATGGTGTGGATCAAGAAGTAGAGCTGATTCATCCTC
GGGAGGTGGTACCCGGAGAGTTTATTCCTGGCGATGTGGTAATTGCGAAT
ATTTTAGTGGGGACATTGCTGGCGATGAGAAACACGATTATGGGGGCGGT
AAAGCCTGGGGGATGGTTGGTCTTGTCGGGTTTGAGGCCTGAGCAGGTGG
AGGTAATCAAGAAGAAGTATGGAAAGAATGTGCAGTGGGAGGAGGGGCTA
GAGAAGGTGGAGGAGGTGAGGAACCCGACGTTTGGGACGGGGGCGGGCCT
CTGGGTTAGACTGGTGGGACGGAGGGTCCATGCCGAACGCTGGGTCGATA
TGTTAAGTGAAGCAGCGGTGTCGTAA
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Synonyms
Publications