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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr5 | genome | chr5:636804..639920 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G02390.1 vs.
Match: EWM28110.1 (ribosomal protein l11 methyltransferase [Nannochloropsis gaditana]) HSP 1 Score: 434.9 bits (1117), Expect = 3.000e-118 Identity = 243/430 (56.51%), Postives = 302/430 (70.23%), Query Frame = 0
Query: 30 LFSAISQAFILPPPCHSSFATPSTDYHQSRRSNLQPLPNTAAAEATVVEGGAANQE--SDRQFTVKIKRRLKEQQHYRVTFVKEIKELGELTDALIEQGALEVSYFTAEPLSFSLTLPVEG-TIE-----VEAIMHLAW----TMIERQQAHERSGGSSSSSSSSSSSTLLGWKYEKEIVLNAMNWFKAAAEPGFSPVSVGRFQVVPVQSYHDPPPLS------AKPEEQQQQLCILPGEGWGDGSHPSTHLCLDFLSQEGVICGGERVIDYGTGSGILSIAAVQIGAREAVGIDVCYDALASAKANVLLNGVDQEVELIHPREVVPGEFIPGDVVIANILVGTLLAMRNTIMGAVKPGGWLVLSGLRPEQVEVIKKKYGKNVQWEEGLEKVEEVRNPTFGTGAGLWVRLVGRRVHAERWVDMLSEAAVS 442
L S +S P HS + S YH SR++ + + ++ T + A E +D++FT K LKEQ+ + VTF ++L EL+D LIE GALEVS SF+LT+ ++G ++E +E +MH A ++E +A RS S W YE+E VLNA+NW KAA + GF PV+VGRFQVVPVQ+Y++ P ++P Q+ ILPGEGWGDG HP+T LCLDFLSQEG++CGGERV+DYG GSGILSIAAVQ+GAREAVGIDVCYDALASA NV LNGV+QEVEL+HPREVVPG+F+PGD+V+ANILVGTL+AM NTI+GAV+ GGWLVLSGLRPEQVEVIK+KYG +V+W+E LE+ EEV NPTFGTGAGLWVRLVGRRV +RWV+ LSEAAVS
Sbjct: 10 LASILSTGCAFQPLVHSPLSYSS--YHGSRQTFGKCNAASFISDVTEKDRAALEAEKLADQEFTRAAKSLLKEQKKFCVTFDSNFEKLSELSDELIECGALEVSLDPMNLKSFALTVDMKGKSLEDSSRALENLMHSALGALPQLLECNEAENRSHPS--------------WSYEEERVLNAVNWQKAAIQEGFPPVNVGRFQVVPVQTYYELPLRPQDSYQPSQPPRGTHQVRILPGEGWGDGHHPTTMLCLDFLSQEGIVCGGERVVDYGCGSGILSIAAVQLGAREAVGIDVCYDALASATTNVRLNGVEQEVELLHPREVVPGDFVPGDIVLANILVGTLMAMSNTILGAVREGGWLVLSGLRPEQVEVIKRKYGDHVRWDESLERAEEVENPTFGTGAGLWVRLVGRRVLGDRWVEALSEAAVS 423
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G02390.1 ID=NO05G02390.1|Name=NO05G02390.1|organism=Nannochloropsis oceanica|type=mRNA|length=2816bp TCTCTAAGTACACTCACTATTTCTTTCTGAAATATTAAAGCATTGAACTT CATACAGTATTACCGCCTTTCTATTTCTTGTTCGGCATGCGCGTCTCCTA GCAGTGCATTTAGCCGAAGTCCCTCCTGACGCTATTCTATAAATATAAAC CCAGCATCGAACTAGATTTCGCAAGTTATAACCCCCGCATCATTTCCACC TTCAATCTCCTAATGTGGTCGGTGGCAGCAGCCGAGTAAAGCGTTTCACG ATATCGAGGTTCCTGGTGTACGCTTTGTACTTCCTTCGAAGGAAGCGTAT CCTTGCAGCTAATTTTACCGCATTGGCAATCAGAACATTATTCGGCACAC ACGAAACAAACAAACTATGTCTTGGTACCGCAGGTTTGGTCTTTGAGTAC CCTCAGCTCCGTGGTCGTGAGGTTCCCCCGCTCCGCTTCTCCGATGCCTC AATTTTACTGGAATTAACCAGCATTAATAAGCTGAAAAGGTACACGTGGG CAAAGCGGGAAGGCCCATGAGACCGAAAATGACGCGACGAGGACGTCCAG GTCCGGCGTTCGCGAGAACTGCCAAGGGCGTGAAACACGTGACAGGTAGC GTAGCTCCGTGTTTAACCTTCGCTTTCATGGCGCCCCGATGGTTGAGTGC TTGCCACTATTGGCAGCAGGTAAGCTAGCGATGAAATGTTGTATCGCTCC ACCAATTGTTGCTTCCGCAAACACAATAAATGGCACACAATAAATGTGAT TAGGACGATGTACTGGAGGACAAGTCAGAGAGGTGTGATCGGCGCAAAAA ATGCATCTTTCGATAAACATAACCATGATCCGCTTCGATACCACGAAAAA AGAATGAGCTTAGATCAGCCATTCGAAAGTAGAGTCCCTCTAGGTTACAG TAGATTAGCCATTCGAAAGTAAATTCCCTTTAGGGCACAGGAGAGGATGA GTTTGCCCACCGCCGCCGGAAAATGCAAGTCGGTGAGAGCTTGCAGTGCG CGGGTTCAGGCCTTTCATTGAAGCCTACAGTGAGTTTACTGCTGTCGTGG TGTTTGATGACTGGCGCGTTCCGGTCTTGAACGACTTCGTGCACGAACAC ACTGGCAGAACGCGAAAACGACTTTCACAAGTGAGAGCAGCCCTGTCAGC TGACCCCTGAAACCTCGGAAACCCCGTTCCCATTGGACAACACGGTGACT TTAAGAGATAATCAAGAAGTTACGGGACACCTGAGAGACATGAATTGATT AAGAGTAATGAGAGGGAAAAAATGACCTTTTCGCATATCAAAATCCACCC GGGGAAAACTCTATCTCGCGGCGGCGAAATCCAGCCCCTCCCTCGGCCTT GGGACACTCAACTTCACTCTTTCCTCAAACAAAAATTTCCAAAGCATACA TTTTACAGCACCTATGGATTCCAAGTCTCCGATAAATCGACATCGACCAA GACAATGCCGACAGCAAAGGTACCGCTTGATAATTTCCAGCATGCTCAGC CTTTTCAGCGCTATCTCTCAGGCTTTCATCCTACCTCCACCATGTCATTC TTCTTTCGCCACCCCCTCCACCGACTATCACCAAAGCCGACGATCCAATC TACAACCTCTACCCAATACTGCCGCTGCCGAAGCTACGGTTGTCGAAGGG GGCGCCGCGAATCAAGAGTCAGATCGACAGTTCACAGTCAAAATAAAAAG GCGTTTGAAAGAGCAACAACATTATCGGGTCACCTTTGTGAAAGAGATCA AGGAGCTCGGGGAACTTACAGATGCCTTAATTGAGCAAGGCGCGCTGGAA GTGTCCTATTTTACGGCAGAGCCGCTCTCCTTCAGTCTCACACTGCCCGT CGAGGGAACAATTGAAGTAGAAGCAATCATGCATCTGGCTTGGACCATGA TTGAGCGCCAACAAGCGCATGAACGAAGCGGCGGCAGCAGCAGCAGCAGC AGCAGCAGCAGCAGCAGCACTCTACTCGGGTGGAAATACGAAAAAGAAAT TGTTCTTAATGCCATGAATTGGTTCAAAGCTGCTGCAGAGCCTGGATTCA GCCCCGTCAGTGTTGGTCGTTTCCAAGTCGTGCCCGTCCAAAGCTACCAC GATCCTCCACCACTTTCCGCTAAGCCCGAAGAGCAGCAGCAGCAGTTGTG CATTCTGCCAGGCGAGGGTTGGGGGGACGGCTCCCATCCATCTACACATT TGTGCCTTGATTTTTTGAGTCAGGAGGGTGTGATTTGTGGAGGGGAGAGG GTTATAGACTATGGCACCGGGAGCGGCATTTTATCAATTGCTGCTGTGCA GATCGGGGCGAGGGAAGCGGTGGGAATTGATGTGTGTTACGATGCTTTGG CCTCTGCCAAAGCAAACGTGCTGCTTAATGGTGTGGATCAAGAAGTAGAG CTGATTCATCCTCGGGAGGTGGTACCCGGAGAGTTTATTCCTGGCGATGT GGTAATTGCGAATATTTTAGTGGGGACATTGCTGGCGATGAGAAACACGA TTATGGGGGCGGTAAAGCCTGGGGGATGGTTGGTCTTGTCGGGTTTGAGG CCTGAGCAGGTGGAGGTAATCAAGAAGAAGTATGGAAAGAATGTGCAGTG GGAGGAGGGGCTAGAGAAGGTGGAGGAGGTGAGGAACCCGACGTTTGGGA CGGGGGCGGGCCTCTGGGTTAGACTGGTGGGACGGAGGGTCCATGCCGAA CGCTGGGTCGATATGTTAAGTGAAGCAGCGGTGTCGTAACTAAATGGAGG ATGAAATAATGATAAAAGATGATGAGATGAGAGTAGACGCAACATAAAAA GAGATCGAGTAGGAAA back to topprotein sequence of NO05G02390.1 >NO05G02390.1-protein ID=NO05G02390.1-protein|Name=NO05G02390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=442bp MDSKSPINRHRPRQCRQQRYRLIISSMLSLFSAISQAFILPPPCHSSFAT PSTDYHQSRRSNLQPLPNTAAAEATVVEGGAANQESDRQFTVKIKRRLKE QQHYRVTFVKEIKELGELTDALIEQGALEVSYFTAEPLSFSLTLPVEGTI EVEAIMHLAWTMIERQQAHERSGGSSSSSSSSSSSTLLGWKYEKEIVLNA MNWFKAAAEPGFSPVSVGRFQVVPVQSYHDPPPLSAKPEEQQQQLCILPG EGWGDGSHPSTHLCLDFLSQEGVICGGERVIDYGTGSGILSIAAVQIGAR EAVGIDVCYDALASAKANVLLNGVDQEVELIHPREVVPGEFIPGDVVIAN ILVGTLLAMRNTIMGAVKPGGWLVLSGLRPEQVEVIKKKYGKNVQWEEGL EKVEEVRNPTFGTGAGLWVRLVGRRVHAERWVDMLSEAAVS* back to topmRNA from alignment at chr5:636804..639920+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G02390.1 ID=NO05G02390.1|Name=NO05G02390.1|organism=Nannochloropsis oceanica|type=mRNA|length=3117bp|location=Sequence derived from alignment at chr5:636804..639920+ (Nannochloropsis oceanica) TCTCTAAGTACACTCACTATTTCTTTCTGAAATATTAAAGCATTGAACTT
CATACAGTATTACCGCCTTTCTATTTCTTGTTCGGCATGCGCGTCTCCTA
GCAGTGCATTTAGCCGAAGTCCCTCCTGACGCTATTCTATAAATATAAAC
CCAGCATCGAACTAGATTTCGCAAGTTATAACCCCCGCATCATTTCCACC
TTCAATCTCCTAATGTGGTCGGTGGCAGCAGCCGAGTAAAGCGTTTCACG
ATATCGAGGTTCCTGGTGTACGCTTTGTACTTCCTTCGAAGGAAGCGTAT
CCTTGCAGCTAATTTTACCGCATTGGCAATCAGAACATTATTCGGCACAC
ACGAAACAAACAAACTATGTCTTGGTACCGCAGGTTTGGTCTTTGAGTAC
CCTCAGCTCCGTGGTCGTGAGGTTCCCCCGCTCCGCTTCTCCGATGCCTC
AATTTTACTGGAATTAACCAGCATTAATAAGCTGAAAAGGTACACGTGGG
CAAAGCGGGAAGGCCCATGAGACCGAAAATGACGCGACGAGGACGTCCAG
GTCCGGCGTTCGCGAGAACTGCCAAGGGCGTGAAACACGTGACAGGTAGC
GTAGCTCCGTGTTTAACCTTCGCTTTCATGGCGCCCCGATGGTTGAGTGC
TTGCCACTATTGGCAGCAGGTAAGCTAGCGATGAAATGTTGTATCGCTCC
ACCAATTGTTGCTTCCGCAAACACAATAAATGGCACACAATAAATGTGAT
TAGGACGATGTACTGGAGGACAAGTCAGAGAGGTGTGATCGGCGCAAAAA
ATGCATCTTTCGATAAACATAACCATGATCCGCTTCGATACCACGAAAAA
AGAATGAGCTTAGATCAGCCATTCGAAAGTAGAGTCCCTCTAGGTTACAG
TAGATTAGCCATTCGAAAGTAAATTCCCTTTAGGGCACAGGAGAGGATGA
GTTTGCCCACCGCCGCCGGAAAATGCAAGTCGGTGAGAGCTTGCAGTGCG
CGGGTTCAGGCCTTTCATTGAAGCCTACAGTGAGTTTACTGCTGTCGTGG
TGTTTGATGACTGGCGCGTTCCGGTCTTGAACGACTTCGTGCACGAACAC
ACTGGCAGAACGCGAAAACGACTTTCACAAGTGAGAGCAGCCCTGTCAGC
TGACCCCTGAAACCTCGGAAACCCCGTTCCCATTGGACAACACGGTGACT
TTAAGAGATAATCAAGAAGTTACGGGACACCTGAGAGACATGAATTGATT
AAGAGTAATGAGAGGGAAAAAATGACCTTTTCGCATATCAAAATCCACCC
GGGGAAAACTCTATCTCGCGGCGGCGAAATCCAGCCCCTCCCTCGGCCTT
GGGACACTCAACTTCACTCTTTCCTCAAACAAAAATTTCCAAAGCATACA
TTTTACAGCACCTATGGATTCCAAGTCTCCGATAAATCGACATCGACCAA
GACAATGCCGACAGCAAAGGTACCGCTTGATAATTTCCAGGTGAGTCGTG
GCTTTCGCCTGGCGTCCTACCCTGTGCTTCCTGGCTCGCAAGCCTTGGGA
CAATAGCGTGAATATATGATTTCGTCCGCAGACTCCAGAGGACGCGGTCC
CCAACATGTCTACAAGGAGGTTGAATTCACAATACTGCCGCGCTCGATAT
CTTATCTTGACAAATCTTGGATCGTGGCGACCATTTTCTCTTTTTGACTG
GCGTTCTGGTGCTTTCTTTGATATCCCCTATCTTGATCTCACCGATGTTT
TACAATCTTGTCCCCCCGACTTTCTCCCAACTCCTCCACAGCATGCTCAG
CCTTTTCAGCGCTATCTCTCAGGCTTTCATCCTACCTCCACCATGTCATT
CTTCTTTCGCCACCCCCTCCACCGACTATCACCAAAGCCGACGATCCAAT
CTACAACCTCTACCCAATACTGCCGCTGCCGAAGCTACGGTTGTCGAAGG
GGGCGCCGCGAATCAAGAGTCAGATCGACAGTTCACAGTCAAAATAAAAA
GGCGTTTGAAAGAGCAACAACATTATCGGGTCACCTTTGTGAAAGAGATC
AAGGAGCTCGGGGAACTTACAGATGCCTTAATTGAGCAAGGCGCGCTGGA
AGTGTCCTATTTTACGGCAGAGCCGCTCTCCTTCAGTCTCACACTGCCCG
TCGAGGGAACAATTGAAGTAGAAGCAATCATGCATCTGGCTTGGACCATG
ATTGAGCGCCAACAAGCGCATGAACGAAGCGGCGGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCACTCTACTCGGGTGGAAATACGAAAAAGAAA
TTGTTCTTAATGCCATGAATTGGTTCAAAGCTGCTGCAGAGCCTGGATTC
AGCCCCGTCAGTGTTGGTCGTTTCCAAGTCGTGCCCGTCCAAAGCTACCA
CGATCCTCCACCACTTTCCGCTAAGCCCGAAGAGCAGCAGCAGCAGTTGT
GCATTCTGCCAGGCGAGGGTTGGGGGGACGGCTCCCATCCATCTACACAT
TTGTGCCTTGATTTTTTGAGTCAGGAGGGTGTGATTTGTGGAGGGGAGAG
GGTTATAGACTATGGCACCGGGAGCGGCATTTTATCAATTGCTGCTGTGC
AGATCGGGGCGAGGGAAGCGGTGGGAATTGATGTGTGTTACGATGCTTTG
GCCTCTGCCAAAGCAAACGTGCTGCTTAATGGTGTGGATCAAGAAGTAGA
GCTGATTCATCCTCGGGAGGTGGTACCCGGAGAGTTTATTCCTGGCGATG
TGGTAATTGCGAATATTTTAGTGGGGACATTGCTGGCGATGAGAAACACG
ATTATGGGGGCGGTAAAGCCTGGGGGATGGTTGGTCTTGTCGGGTTTGAG
GCCTGAGCAGGTGGAGGTAATCAAGAAGAAGTATGGAAAGAATGTGCAGT
GGGAGGAGGGGCTAGAGAAGGTGGAGGAGGTGAGGAACCCGACGTTTGGG
ACGGGGGCGGGCCTCTGGGTTAGACTGGTGGGACGGAGGGTCCATGCCGA
ACGCTGGGTCGATATGTTAAGTGAAGCAGCGGTGTCGTAACTAAATGGAG
GATGAAATAATGATAAAAGATGATGAGATGAGAGTAGACGCAACATAAAA
AGAGATCGAGTAGGAAA back to topCoding sequence (CDS) from alignment at chr5:636804..639920+ >NO05G02390.1 ID=NO05G02390.1|Name=NO05G02390.1|organism=Nannochloropsis oceanica|type=CDS|length=1326bp|location=Sequence derived from alignment at chr5:636804..639920+ (Nannochloropsis oceanica) ATGGATTCCAAGTCTCCGATAAATCGACATCGACCAAGACAATGCCGACA GCAAAGGTACCGCTTGATAATTTCCAGCATGCTCAGCCTTTTCAGCGCTA TCTCTCAGGCTTTCATCCTACCTCCACCATGTCATTCTTCTTTCGCCACC CCCTCCACCGACTATCACCAAAGCCGACGATCCAATCTACAACCTCTACC CAATACTGCCGCTGCCGAAGCTACGGTTGTCGAAGGGGGCGCCGCGAATC AAGAGTCAGATCGACAGTTCACAGTCAAAATAAAAAGGCGTTTGAAAGAG CAACAACATTATCGGGTCACCTTTGTGAAAGAGATCAAGGAGCTCGGGGA ACTTACAGATGCCTTAATTGAGCAAGGCGCGCTGGAAGTGTCCTATTTTA CGGCAGAGCCGCTCTCCTTCAGTCTCACACTGCCCGTCGAGGGAACAATT GAAGTAGAAGCAATCATGCATCTGGCTTGGACCATGATTGAGCGCCAACA AGCGCATGAACGAAGCGGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA GCAGCACTCTACTCGGGTGGAAATACGAAAAAGAAATTGTTCTTAATGCC ATGAATTGGTTCAAAGCTGCTGCAGAGCCTGGATTCAGCCCCGTCAGTGT TGGTCGTTTCCAAGTCGTGCCCGTCCAAAGCTACCACGATCCTCCACCAC TTTCCGCTAAGCCCGAAGAGCAGCAGCAGCAGTTGTGCATTCTGCCAGGC GAGGGTTGGGGGGACGGCTCCCATCCATCTACACATTTGTGCCTTGATTT TTTGAGTCAGGAGGGTGTGATTTGTGGAGGGGAGAGGGTTATAGACTATG GCACCGGGAGCGGCATTTTATCAATTGCTGCTGTGCAGATCGGGGCGAGG GAAGCGGTGGGAATTGATGTGTGTTACGATGCTTTGGCCTCTGCCAAAGC AAACGTGCTGCTTAATGGTGTGGATCAAGAAGTAGAGCTGATTCATCCTC GGGAGGTGGTACCCGGAGAGTTTATTCCTGGCGATGTGGTAATTGCGAAT ATTTTAGTGGGGACATTGCTGGCGATGAGAAACACGATTATGGGGGCGGT AAAGCCTGGGGGATGGTTGGTCTTGTCGGGTTTGAGGCCTGAGCAGGTGG AGGTAATCAAGAAGAAGTATGGAAAGAATGTGCAGTGGGAGGAGGGGCTA GAGAAGGTGGAGGAGGTGAGGAACCCGACGTTTGGGACGGGGGCGGGCCT CTGGGTTAGACTGGTGGGACGGAGGGTCCATGCCGAACGCTGGGTCGATA TGTTAAGTGAAGCAGCGGTGTCGTAA back to top
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