NO05G02310.1, NO05G02310.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO05G02310.1
Unique Name	NO05G02310.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	930
Alignment location	chr5:613530..614459 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr5	genome	chr5:613530..614459 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO05G02310.1 vs.

BLAST of NO05G02310.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO05G02310	NO05G02310	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO05G02310.1	NO05G02310.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO05G02310.1.cds1	NO05G02310.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr5:613530..614459-
coding sequence from alignment at chr5:613530..614459-

mRNA sequence

>NO05G02310.1 ID=NO05G02310.1|Name=NO05G02310.1|organism=Nannochloropsis oceanica|type=mRNA|length=930bp
CAAAGTACTGCCCTCGTTTCTCAGCATTAGGCAACTGGGCATCACTAACG
GCAAAATGATCATCATCAACCAGCTTTCACGTCTCAGCCAAGGCAACGAT
ACGTTACCTTTCCGAAGTAACAACACTCTACCCGTACAACACACTGCAGG
AGCTCTTCTTGCATCCTTGTACGCCGGCGTGCCACTGCTTGATCTGTCTT
CTTTAGGCGGCATACACACCCCAAACCTTTTACCACCCCAATGAAGACGG
ACCCTCGTCGGCCGGCGCGCAATAGCTTCTTTAACGGACAATCCATTGCG
CGACCCCCCTACTACCCTCGGCACCCTCCATCGGAAAGGGTACTTCCCTG
TCCGCCCATGCCTCCGGCTTACCATGCGAATGGCATGATGATACCCCAGG
GGCACCATTATCATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGAACGTGTCGTTTGGCAACGGACAATGTCAGCCAGA
GTGGGGGGCATCAAGGGGGGGCGAATCAAGGGGTGGTGGTGGGGGCTATC
AATTTGGCAGTGATGGTGGACGTGGTGGAAGCTACGGAAGGAGGACTGGA
GGGAGTCGCGTACGGGGGGGGGGGCATGAACGGGACGGGAGAGGGCGAAA
ACGAACCCGTGACGGGCGAGGAAACGCCCGCCATCACCACGACCATGGCA
GTGAAGGGCAACTAGCGGCAGGTTTTTTCAAGCCCAGCTTTTTAGAGGAT
CCTTGGCTGCCCTTGCTGCGGGAGGATGAGCGGCACCAGCAGCACATCCC
TGTCCATGGCCCCTCGAAGGACTTACAGCTACGGGTGGCGCAGCACGTAC
AGGAAGCAGTCCAAGAACCGATGAGCGTGGTGGCGGTGCCCGTGAAAGAT
GATGCAGAGATAGATTTGGACGGCTTGTAA

protein sequence of NO05G02310.1

>NO05G02310.1-protein ID=NO05G02310.1-protein|Name=NO05G02310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=230bp
MKTDPRRPARNSFFNGQSIARPPYYPRHPPSERVLPCPPMPPAYHANGMM
IPQGHHYHQQQQQQQQQQQQQQQQQNVSFGNGQCQPEWGASRGGESRGGG
GGYQFGSDGGRGGSYGRRTGGSRVRGGGHERDGRGRKRTRDGRGNARHHH
DHGSEGQLAAGFFKPSFLEDPWLPLLREDERHQQHIPVHGPSKDLQLRVA
QHVQEAVQEPMSVVAVPVKDDAEIDLDGL*

mRNA from alignment at chr5:613530..614459-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO05G02310.1 ID=NO05G02310.1|Name=NO05G02310.1|organism=Nannochloropsis oceanica|type=mRNA|length=930bp|location=Sequence derived from alignment at chr5:613530..614459- (Nannochloropsis oceanica)
CAAAGTACTGCCCTCGTTTCTCAGCATTAGGCAACTGGGCATCACTAACG
GCAAAATGATCATCATCAACCAGCTTTCACGTCTCAGCCAAGGCAACGAT
ACGTTACCTTTCCGAAGTAACAACACTCTACCCGTACAACACACTGCAGG
AGCTCTTCTTGCATCCTTGTACGCCGGCGTGCCACTGCTTGATCTGTCTT
CTTTAGGCGGCATACACACCCCAAACCTTTTACCACCCCAATGAAGACGG
ACCCTCGTCGGCCGGCGCGCAATAGCTTCTTTAACGGACAATCCATTGCG
CGACCCCCCTACTACCCTCGGCACCCTCCATCGGAAAGGGTACTTCCCTG
TCCGCCCATGCCTCCGGCTTACCATGCGAATGGCATGATGATACCCCAGG
GGCACCATTATCATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGAACGTGTCGTTTGGCAACGGACAATGTCAGCCAGA
GTGGGGGGCATCAAGGGGGGGCGAATCAAGGGGTGGTGGTGGGGGCTATC
AATTTGGCAGTGATGGTGGACGTGGTGGAAGCTACGGAAGGAGGACTGGA
GGGAGTCGCGTACGGGGGGGGGGGCATGAACGGGACGGGAGAGGGCGAAA
ACGAACCCGTGACGGGCGAGGAAACGCCCGCCATCACCACGACCATGGCA
GTGAAGGGCAACTAGCGGCAGGTTTTTTCAAGCCCAGCTTTTTAGAGGAT
CCTTGGCTGCCCTTGCTGCGGGAGGATGAGCGGCACCAGCAGCACATCCC
TGTCCATGGCCCCTCGAAGGACTTACAGCTACGGGTGGCGCAGCACGTAC
AGGAAGCAGTCCAAGAACCGATGAGCGTGGTGGCGGTGCCCGTGAAAGAT
GATGCAGAGATAGATTTGGACGGCTTGTAA

Coding sequence (CDS) from alignment at chr5:613530..614459-

>NO05G02310.1 ID=NO05G02310.1|Name=NO05G02310.1|organism=Nannochloropsis oceanica|type=CDS|length=690bp|location=Sequence derived from alignment at chr5:613530..614459- (Nannochloropsis oceanica)
ATGAAGACGGACCCTCGTCGGCCGGCGCGCAATAGCTTCTTTAACGGACA
ATCCATTGCGCGACCCCCCTACTACCCTCGGCACCCTCCATCGGAAAGGG
TACTTCCCTGTCCGCCCATGCCTCCGGCTTACCATGCGAATGGCATGATG
ATACCCCAGGGGCACCATTATCATCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGAACGTGTCGTTTGGCAACGGACAAT
GTCAGCCAGAGTGGGGGGCATCAAGGGGGGGCGAATCAAGGGGTGGTGGT
GGGGGCTATCAATTTGGCAGTGATGGTGGACGTGGTGGAAGCTACGGAAG
GAGGACTGGAGGGAGTCGCGTACGGGGGGGGGGGCATGAACGGGACGGGA
GAGGGCGAAAACGAACCCGTGACGGGCGAGGAAACGCCCGCCATCACCAC
GACCATGGCAGTGAAGGGCAACTAGCGGCAGGTTTTTTCAAGCCCAGCTT
TTTAGAGGATCCTTGGCTGCCCTTGCTGCGGGAGGATGAGCGGCACCAGC
AGCACATCCCTGTCCATGGCCCCTCGAAGGACTTACAGCTACGGGTGGCG
CAGCACGTACAGGAAGCAGTCCAAGAACCGATGAGCGTGGTGGCGGTGCC
CGTGAAAGATGATGCAGAGATAGATTTGGACGGCTTGTAA

Synonyms

Publications