NO05G02250.1, NO05G02250.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G02250.1
Unique NameNO05G02250.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1749
Alignment locationchr5:598358..600106 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:598358..600106 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO05G02250.1 vs.
Match: EWM28157.1 (mitochondrial 2-oxoglutarate malate carrier [Nannochloropsis gaditana])

HSP 1 Score: 563.1 bits (1450), Expect = 5.300e-157
Identity = 277/317 (87.38%), Postives = 295/317 (93.06%), Query Frame = 0
Query:    1 MGEKQTSLAETIQPFVCGGASACFASSIIHPIDLAKVRLQLFSTLNPGVKAPGAVSVIVNLVKNDGLAAAYAGLSASLMRQAIYGTARIGLHRTFSDKLEKTMGGTIPFWMKTLSGMLSGGIAVCIGTPFDVALVRMQADSMKPVELRRNYKNVFDAIGRIFREEGPKRLYAGLAPNVLRGMSMNVGMLACYDQAKDAISVHVTKDADPKKPSVVTNLLSSAVAGFTSAFFSLPFDMLKSRMQDMKPDANGKMPYTGLADCTLSIFRKEGLLAFWTGFPAYYGRCAPHAMIILLTIEQVTKVYRSVFVLAKPVPLAS 318
            M E + +LAETIQPF CGG SACFASSIIHPIDLAKVRLQLF+TLNPGVK P AVSVIVNLVK DG+ AAYAGLSASLMRQAIYGTARIGLHRTFSDKLEK+ GG+IPFWMKTLSGM SG IAVCIGTPFDVALVRMQADSMKP+ELRRNYKNVFDAIGRIF EEGP RLYAGLAPNVLRGMSMNVGMLACYDQAKDAIS HVTKD DPKKPS++TNLLSSAVAGFTSAFFSLPFDMLKSRMQDMKP+A GKMPY+GLADCTL+IFR+EG+LAFWTGFPAYYGRCAPHAMIILLTIEQV K+YRS+F+  KP PL +
Sbjct:    1 MVESKHTLAETIQPFACGGLSACFASSIIHPIDLAKVRLQLFATLNPGVKRPSAVSVIVNLVKTDGITAAYAGLSASLMRQAIYGTARIGLHRTFSDKLEKSTGGSIPFWMKTLSGMASGAIAVCIGTPFDVALVRMQADSMKPLELRRNYKNVFDAIGRIFTEEGPMRLYAGLAPNVLRGMSMNVGMLACYDQAKDAISAHVTKDPDPKKPSLLTNLLSSAVAGFTSAFFSLPFDMLKSRMQDMKPNAQGKMPYSGLADCTLTIFRQEGILAFWTGFPAYYGRCAPHAMIILLTIEQVNKIYRSIFLSPKPAPLVA 317          
The following BLAST results are available for this feature:
BLAST of NO05G02250.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28157.15.300e-15787.38mitochondrial 2-oxoglutarate malate carrier [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G02250NO05G02250Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G02250.1NO05G02250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G02250.1.cds1NO05G02250.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G02250.1 ID=NO05G02250.1|Name=NO05G02250.1|organism=Nannochloropsis oceanica|type=mRNA|length=1749bp
TGCACGTATGCGATTCATTCGTGGAGAAGTTGGCTCTAGTCCTCGATCTT
ATTGTGTTACCACTGCCTTCTCAGCCCTTGCCCAATCATTGCAACCACCT
CCTCTTCCTCCTCATCCACGTGCCAGACCGCTCGACCCCGTCGACTCCCG
TATGCGTCGCCGCAAGTGCGGAAGTTTTTTTGGGGCAGTCCGCCTGCATT
CCTACTCCTCCTGATTCATCCTTGTCGTTTTTCCTCATACATTTGTCATC
CCTAAATTGTGCACAGGCCACCACACGACTCGCTCGCAGCAGCCCGCCAG
CCAGCAGCCATGGGTGAAAAGCAGACGAGCTTGGCTGAGACGATACAGCC
TTTTGTCTGTGGCGGCGCGAGTGCTTGTTTCGCCAGCAGCATCATCCATC
CCATCGACCTGGCGAAGGTGCGCCTCCAACTCTTCTCCACCCTCAACCCT
GGCGTAAAGGCACCAGGCGCAGTGAGTGTCATCGTTAACTTGGTCAAAAA
CGACGGGTTAGCGGCGGCCTATGCGGGTTTGAGTGCCTCGCTGATGAGGC
AAGCGATCTACGGCACGGCACGCATTGGCTTGCATCGGACCTTTTCGGAT
AAACTAGAGAAAACCATGGGTGGGACAATCCCCTTCTGGATGAAGACCTT
GAGCGGCATGTTGTCAGGCGGCATCGCCGTCTGCATCGGCACGCCCTTCG
ACGTCGCCCTGGTGCGCATGCAGGCTGACTCCATGAAGCCCGTAGAGCTG
CGCCGGAACTACAAGAACGTGTTTGACGCGATCGGACGCATCTTCAGGGA
GGAGGGGCCCAAACGGCTGTATGCGGGTTTGGCGCCCAATGTGCTGCGTG
GGATGTCCATGAACGTGGGTATGCTCGCGTGCTACGACCAGGCAAAGGAC
GCCATATCCGTGCACGTGACCAAGGACGCAGACCCAAAGAAGCCCTCCGT
CGTCACCAACCTCCTCTCCTCAGCCGTAGCCGGCTTCACCTCTGCCTTCT
TCTCTCTACCCTTCGACATGCTCAAATCCCGGATGCAGGACATGAAACCC
GACGCCAATGGCAAGATGCCCTACACGGGCCTGGCCGACTGTACGCTGTC
CATCTTCAGAAAAGAGGGCCTGCTCGCCTTCTGGACAGGCTTTCCCGCTT
ACTACGGCCGATGCGCACCCCACGCCATGATTATCTTGCTGACCATTGAG
CAGGTTACCAAAGTTTACCGTTCTGTCTTCGTGTTGGCGAAACCTGTGCC
CCTTGCCTCATAAGATGAGAGGAAGAGGGGGGCGGGGCACAGAAGCAGCA
TCGGGAGCAGTAGCAAGAGGCTTAGGTAGAGGCATGGAAGATAGATAGAA
GAAGGAGAAAAGGAGAGGCTGACGGCAAGGAAGGAAGGGGCCCAGACACC
AAATGAATGAATTATCCTGATCATGACTCCATTTCCCGGCCCTCTTCTTC
CGACGGGAAGTGTGGTGACCCACAGGCATAGAGGACATAGGTGGAGGGAA
GGAGATTGTGGGGTTTGGTTAGCTGCGTTATTTTTATACATCAAAACGCA
TGCACATTGTTCAGCCATGCGCTCGGATGCGACCAGGCGAGCAGGGCGGG
AGGGATAAAGGTCTCTTTATTGAAAGAGAGATAGTTGGTGAGCGGAAATG
ATTTACTGGCGCGAAACGAAATGTGCTGCGGTGTGACAGTTTTGGAGCAA
GGGGGGTACAATCCGTATCCATCGATAGAAGAAAAAATATAATGCATAA
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protein sequence of NO05G02250.1

>NO05G02250.1-protein ID=NO05G02250.1-protein|Name=NO05G02250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=318bp
MGEKQTSLAETIQPFVCGGASACFASSIIHPIDLAKVRLQLFSTLNPGVK
APGAVSVIVNLVKNDGLAAAYAGLSASLMRQAIYGTARIGLHRTFSDKLE
KTMGGTIPFWMKTLSGMLSGGIAVCIGTPFDVALVRMQADSMKPVELRRN
YKNVFDAIGRIFREEGPKRLYAGLAPNVLRGMSMNVGMLACYDQAKDAIS
VHVTKDADPKKPSVVTNLLSSAVAGFTSAFFSLPFDMLKSRMQDMKPDAN
GKMPYTGLADCTLSIFRKEGLLAFWTGFPAYYGRCAPHAMIILLTIEQVT
KVYRSVFVLAKPVPLAS*
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mRNA from alignment at chr5:598358..600106-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G02250.1 ID=NO05G02250.1|Name=NO05G02250.1|organism=Nannochloropsis oceanica|type=mRNA|length=1749bp|location=Sequence derived from alignment at chr5:598358..600106- (Nannochloropsis oceanica)
TGCACGTATGCGATTCATTCGTGGAGAAGTTGGCTCTAGTCCTCGATCTT ATTGTGTTACCACTGCCTTCTCAGCCCTTGCCCAATCATTGCAACCACCT CCTCTTCCTCCTCATCCACGTGCCAGACCGCTCGACCCCGTCGACTCCCG TATGCGTCGCCGCAAGTGCGGAAGTTTTTTTGGGGCAGTCCGCCTGCATT CCTACTCCTCCTGATTCATCCTTGTCGTTTTTCCTCATACATTTGTCATC CCTAAATTGTGCACAGGCCACCACACGACTCGCTCGCAGCAGCCCGCCAG CCAGCAGCCATGGGTGAAAAGCAGACGAGCTTGGCTGAGACGATACAGCC TTTTGTCTGTGGCGGCGCGAGTGCTTGTTTCGCCAGCAGCATCATCCATC CCATCGACCTGGCGAAGGTGCGCCTCCAACTCTTCTCCACCCTCAACCCT GGCGTAAAGGCACCAGGCGCAGTGAGTGTCATCGTTAACTTGGTCAAAAA CGACGGGTTAGCGGCGGCCTATGCGGGTTTGAGTGCCTCGCTGATGAGGC AAGCGATCTACGGCACGGCACGCATTGGCTTGCATCGGACCTTTTCGGAT AAACTAGAGAAAACCATGGGTGGGACAATCCCCTTCTGGATGAAGACCTT GAGCGGCATGTTGTCAGGCGGCATCGCCGTCTGCATCGGCACGCCCTTCG ACGTCGCCCTGGTGCGCATGCAGGCTGACTCCATGAAGCCCGTAGAGCTG CGCCGGAACTACAAGAACGTGTTTGACGCGATCGGACGCATCTTCAGGGA GGAGGGGCCCAAACGGCTGTATGCGGGTTTGGCGCCCAATGTGCTGCGTG GGATGTCCATGAACGTGGGTATGCTCGCGTGCTACGACCAGGCAAAGGAC GCCATATCCGTGCACGTGACCAAGGACGCAGACCCAAAGAAGCCCTCCGT CGTCACCAACCTCCTCTCCTCAGCCGTAGCCGGCTTCACCTCTGCCTTCT TCTCTCTACCCTTCGACATGCTCAAATCCCGGATGCAGGACATGAAACCC GACGCCAATGGCAAGATGCCCTACACGGGCCTGGCCGACTGTACGCTGTC CATCTTCAGAAAAGAGGGCCTGCTCGCCTTCTGGACAGGCTTTCCCGCTT ACTACGGCCGATGCGCACCCCACGCCATGATTATCTTGCTGACCATTGAG CAGGTTACCAAAGTTTACCGTTCTGTCTTCGTGTTGGCGAAACCTGTGCC CCTTGCCTCATAAGATGAGAGGAAGAGGGGGGCGGGGCACAGAAGCAGCA TCGGGAGCAGTAGCAAGAGGCTTAGGTAGAGGCATGGAAGATAGATAGAA GAAGGAGAAAAGGAGAGGCTGACGGCAAGGAAGGAAGGGGCCCAGACACC AAATGAATGAATTATCCTGATCATGACTCCATTTCCCGGCCCTCTTCTTC CGACGGGAAGTGTGGTGACCCACAGGCATAGAGGACATAGGTGGAGGGAA GGAGATTGTGGGGTTTGGTTAGCTGCGTTATTTTTATACATCAAAACGCA TGCACATTGTTCAGCCATGCGCTCGGATGCGACCAGGCGAGCAGGGCGGG AGGGATAAAGGTCTCTTTATTGAAAGAGAGATAGTTGGTGAGCGGAAATG ATTTACTGGCGCGAAACGAAATGTGCTGCGGTGTGACAGTTTTGGAGCAA GGGGGGTACAATCCGTATCCATCGATAGAAGAAAAAATATAATGCATAA
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Coding sequence (CDS) from alignment at chr5:598358..600106-

>NO05G02250.1 ID=NO05G02250.1|Name=NO05G02250.1|organism=Nannochloropsis oceanica|type=CDS|length=954bp|location=Sequence derived from alignment at chr5:598358..600106- (Nannochloropsis oceanica)
ATGGGTGAAAAGCAGACGAGCTTGGCTGAGACGATACAGCCTTTTGTCTG
TGGCGGCGCGAGTGCTTGTTTCGCCAGCAGCATCATCCATCCCATCGACC
TGGCGAAGGTGCGCCTCCAACTCTTCTCCACCCTCAACCCTGGCGTAAAG
GCACCAGGCGCAGTGAGTGTCATCGTTAACTTGGTCAAAAACGACGGGTT
AGCGGCGGCCTATGCGGGTTTGAGTGCCTCGCTGATGAGGCAAGCGATCT
ACGGCACGGCACGCATTGGCTTGCATCGGACCTTTTCGGATAAACTAGAG
AAAACCATGGGTGGGACAATCCCCTTCTGGATGAAGACCTTGAGCGGCAT
GTTGTCAGGCGGCATCGCCGTCTGCATCGGCACGCCCTTCGACGTCGCCC
TGGTGCGCATGCAGGCTGACTCCATGAAGCCCGTAGAGCTGCGCCGGAAC
TACAAGAACGTGTTTGACGCGATCGGACGCATCTTCAGGGAGGAGGGGCC
CAAACGGCTGTATGCGGGTTTGGCGCCCAATGTGCTGCGTGGGATGTCCA
TGAACGTGGGTATGCTCGCGTGCTACGACCAGGCAAAGGACGCCATATCC
GTGCACGTGACCAAGGACGCAGACCCAAAGAAGCCCTCCGTCGTCACCAA
CCTCCTCTCCTCAGCCGTAGCCGGCTTCACCTCTGCCTTCTTCTCTCTAC
CCTTCGACATGCTCAAATCCCGGATGCAGGACATGAAACCCGACGCCAAT
GGCAAGATGCCCTACACGGGCCTGGCCGACTGTACGCTGTCCATCTTCAG
AAAAGAGGGCCTGCTCGCCTTCTGGACAGGCTTTCCCGCTTACTACGGCC
GATGCGCACCCCACGCCATGATTATCTTGCTGACCATTGAGCAGGTTACC
AAAGTTTACCGTTCTGTCTTCGTGTTGGCGAAACCTGTGCCCCTTGCCTC
ATAA
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Synonyms
Publications