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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr5 | genome | chr5:598358..600106 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G02250.1 vs.
Match: EWM28157.1 (mitochondrial 2-oxoglutarate malate carrier [Nannochloropsis gaditana]) HSP 1 Score: 563.1 bits (1450), Expect = 5.300e-157 Identity = 277/317 (87.38%), Postives = 295/317 (93.06%), Query Frame = 0
Query: 1 MGEKQTSLAETIQPFVCGGASACFASSIIHPIDLAKVRLQLFSTLNPGVKAPGAVSVIVNLVKNDGLAAAYAGLSASLMRQAIYGTARIGLHRTFSDKLEKTMGGTIPFWMKTLSGMLSGGIAVCIGTPFDVALVRMQADSMKPVELRRNYKNVFDAIGRIFREEGPKRLYAGLAPNVLRGMSMNVGMLACYDQAKDAISVHVTKDADPKKPSVVTNLLSSAVAGFTSAFFSLPFDMLKSRMQDMKPDANGKMPYTGLADCTLSIFRKEGLLAFWTGFPAYYGRCAPHAMIILLTIEQVTKVYRSVFVLAKPVPLAS 318
M E + +LAETIQPF CGG SACFASSIIHPIDLAKVRLQLF+TLNPGVK P AVSVIVNLVK DG+ AAYAGLSASLMRQAIYGTARIGLHRTFSDKLEK+ GG+IPFWMKTLSGM SG IAVCIGTPFDVALVRMQADSMKP+ELRRNYKNVFDAIGRIF EEGP RLYAGLAPNVLRGMSMNVGMLACYDQAKDAIS HVTKD DPKKPS++TNLLSSAVAGFTSAFFSLPFDMLKSRMQDMKP+A GKMPY+GLADCTL+IFR+EG+LAFWTGFPAYYGRCAPHAMIILLTIEQV K+YRS+F+ KP PL +
Sbjct: 1 MVESKHTLAETIQPFACGGLSACFASSIIHPIDLAKVRLQLFATLNPGVKRPSAVSVIVNLVKTDGITAAYAGLSASLMRQAIYGTARIGLHRTFSDKLEKSTGGSIPFWMKTLSGMASGAIAVCIGTPFDVALVRMQADSMKPLELRRNYKNVFDAIGRIFTEEGPMRLYAGLAPNVLRGMSMNVGMLACYDQAKDAISAHVTKDPDPKKPSLLTNLLSSAVAGFTSAFFSLPFDMLKSRMQDMKPNAQGKMPYSGLADCTLTIFRQEGILAFWTGFPAYYGRCAPHAMIILLTIEQVNKIYRSIFLSPKPAPLVA 317
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G02250.1 ID=NO05G02250.1|Name=NO05G02250.1|organism=Nannochloropsis oceanica|type=mRNA|length=1749bp TGCACGTATGCGATTCATTCGTGGAGAAGTTGGCTCTAGTCCTCGATCTT ATTGTGTTACCACTGCCTTCTCAGCCCTTGCCCAATCATTGCAACCACCT CCTCTTCCTCCTCATCCACGTGCCAGACCGCTCGACCCCGTCGACTCCCG TATGCGTCGCCGCAAGTGCGGAAGTTTTTTTGGGGCAGTCCGCCTGCATT CCTACTCCTCCTGATTCATCCTTGTCGTTTTTCCTCATACATTTGTCATC CCTAAATTGTGCACAGGCCACCACACGACTCGCTCGCAGCAGCCCGCCAG CCAGCAGCCATGGGTGAAAAGCAGACGAGCTTGGCTGAGACGATACAGCC TTTTGTCTGTGGCGGCGCGAGTGCTTGTTTCGCCAGCAGCATCATCCATC CCATCGACCTGGCGAAGGTGCGCCTCCAACTCTTCTCCACCCTCAACCCT GGCGTAAAGGCACCAGGCGCAGTGAGTGTCATCGTTAACTTGGTCAAAAA CGACGGGTTAGCGGCGGCCTATGCGGGTTTGAGTGCCTCGCTGATGAGGC AAGCGATCTACGGCACGGCACGCATTGGCTTGCATCGGACCTTTTCGGAT AAACTAGAGAAAACCATGGGTGGGACAATCCCCTTCTGGATGAAGACCTT GAGCGGCATGTTGTCAGGCGGCATCGCCGTCTGCATCGGCACGCCCTTCG ACGTCGCCCTGGTGCGCATGCAGGCTGACTCCATGAAGCCCGTAGAGCTG CGCCGGAACTACAAGAACGTGTTTGACGCGATCGGACGCATCTTCAGGGA GGAGGGGCCCAAACGGCTGTATGCGGGTTTGGCGCCCAATGTGCTGCGTG GGATGTCCATGAACGTGGGTATGCTCGCGTGCTACGACCAGGCAAAGGAC GCCATATCCGTGCACGTGACCAAGGACGCAGACCCAAAGAAGCCCTCCGT CGTCACCAACCTCCTCTCCTCAGCCGTAGCCGGCTTCACCTCTGCCTTCT TCTCTCTACCCTTCGACATGCTCAAATCCCGGATGCAGGACATGAAACCC GACGCCAATGGCAAGATGCCCTACACGGGCCTGGCCGACTGTACGCTGTC CATCTTCAGAAAAGAGGGCCTGCTCGCCTTCTGGACAGGCTTTCCCGCTT ACTACGGCCGATGCGCACCCCACGCCATGATTATCTTGCTGACCATTGAG CAGGTTACCAAAGTTTACCGTTCTGTCTTCGTGTTGGCGAAACCTGTGCC CCTTGCCTCATAAGATGAGAGGAAGAGGGGGGCGGGGCACAGAAGCAGCA TCGGGAGCAGTAGCAAGAGGCTTAGGTAGAGGCATGGAAGATAGATAGAA GAAGGAGAAAAGGAGAGGCTGACGGCAAGGAAGGAAGGGGCCCAGACACC AAATGAATGAATTATCCTGATCATGACTCCATTTCCCGGCCCTCTTCTTC CGACGGGAAGTGTGGTGACCCACAGGCATAGAGGACATAGGTGGAGGGAA GGAGATTGTGGGGTTTGGTTAGCTGCGTTATTTTTATACATCAAAACGCA TGCACATTGTTCAGCCATGCGCTCGGATGCGACCAGGCGAGCAGGGCGGG AGGGATAAAGGTCTCTTTATTGAAAGAGAGATAGTTGGTGAGCGGAAATG ATTTACTGGCGCGAAACGAAATGTGCTGCGGTGTGACAGTTTTGGAGCAA GGGGGGTACAATCCGTATCCATCGATAGAAGAAAAAATATAATGCATAA back to topprotein sequence of NO05G02250.1 >NO05G02250.1-protein ID=NO05G02250.1-protein|Name=NO05G02250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=318bp MGEKQTSLAETIQPFVCGGASACFASSIIHPIDLAKVRLQLFSTLNPGVK APGAVSVIVNLVKNDGLAAAYAGLSASLMRQAIYGTARIGLHRTFSDKLE KTMGGTIPFWMKTLSGMLSGGIAVCIGTPFDVALVRMQADSMKPVELRRN YKNVFDAIGRIFREEGPKRLYAGLAPNVLRGMSMNVGMLACYDQAKDAIS VHVTKDADPKKPSVVTNLLSSAVAGFTSAFFSLPFDMLKSRMQDMKPDAN GKMPYTGLADCTLSIFRKEGLLAFWTGFPAYYGRCAPHAMIILLTIEQVT KVYRSVFVLAKPVPLAS* back to topmRNA from alignment at chr5:598358..600106- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G02250.1 ID=NO05G02250.1|Name=NO05G02250.1|organism=Nannochloropsis oceanica|type=mRNA|length=1749bp|location=Sequence derived from alignment at chr5:598358..600106- (Nannochloropsis oceanica) TGCACGTATGCGATTCATTCGTGGAGAAGTTGGCTCTAGTCCTCGATCTT
ATTGTGTTACCACTGCCTTCTCAGCCCTTGCCCAATCATTGCAACCACCT
CCTCTTCCTCCTCATCCACGTGCCAGACCGCTCGACCCCGTCGACTCCCG
TATGCGTCGCCGCAAGTGCGGAAGTTTTTTTGGGGCAGTCCGCCTGCATT
CCTACTCCTCCTGATTCATCCTTGTCGTTTTTCCTCATACATTTGTCATC
CCTAAATTGTGCACAGGCCACCACACGACTCGCTCGCAGCAGCCCGCCAG
CCAGCAGCCATGGGTGAAAAGCAGACGAGCTTGGCTGAGACGATACAGCC
TTTTGTCTGTGGCGGCGCGAGTGCTTGTTTCGCCAGCAGCATCATCCATC
CCATCGACCTGGCGAAGGTGCGCCTCCAACTCTTCTCCACCCTCAACCCT
GGCGTAAAGGCACCAGGCGCAGTGAGTGTCATCGTTAACTTGGTCAAAAA
CGACGGGTTAGCGGCGGCCTATGCGGGTTTGAGTGCCTCGCTGATGAGGC
AAGCGATCTACGGCACGGCACGCATTGGCTTGCATCGGACCTTTTCGGAT
AAACTAGAGAAAACCATGGGTGGGACAATCCCCTTCTGGATGAAGACCTT
GAGCGGCATGTTGTCAGGCGGCATCGCCGTCTGCATCGGCACGCCCTTCG
ACGTCGCCCTGGTGCGCATGCAGGCTGACTCCATGAAGCCCGTAGAGCTG
CGCCGGAACTACAAGAACGTGTTTGACGCGATCGGACGCATCTTCAGGGA
GGAGGGGCCCAAACGGCTGTATGCGGGTTTGGCGCCCAATGTGCTGCGTG
GGATGTCCATGAACGTGGGTATGCTCGCGTGCTACGACCAGGCAAAGGAC
GCCATATCCGTGCACGTGACCAAGGACGCAGACCCAAAGAAGCCCTCCGT
CGTCACCAACCTCCTCTCCTCAGCCGTAGCCGGCTTCACCTCTGCCTTCT
TCTCTCTACCCTTCGACATGCTCAAATCCCGGATGCAGGACATGAAACCC
GACGCCAATGGCAAGATGCCCTACACGGGCCTGGCCGACTGTACGCTGTC
CATCTTCAGAAAAGAGGGCCTGCTCGCCTTCTGGACAGGCTTTCCCGCTT
ACTACGGCCGATGCGCACCCCACGCCATGATTATCTTGCTGACCATTGAG
CAGGTTACCAAAGTTTACCGTTCTGTCTTCGTGTTGGCGAAACCTGTGCC
CCTTGCCTCATAAGATGAGAGGAAGAGGGGGGCGGGGCACAGAAGCAGCA
TCGGGAGCAGTAGCAAGAGGCTTAGGTAGAGGCATGGAAGATAGATAGAA
GAAGGAGAAAAGGAGAGGCTGACGGCAAGGAAGGAAGGGGCCCAGACACC
AAATGAATGAATTATCCTGATCATGACTCCATTTCCCGGCCCTCTTCTTC
CGACGGGAAGTGTGGTGACCCACAGGCATAGAGGACATAGGTGGAGGGAA
GGAGATTGTGGGGTTTGGTTAGCTGCGTTATTTTTATACATCAAAACGCA
TGCACATTGTTCAGCCATGCGCTCGGATGCGACCAGGCGAGCAGGGCGGG
AGGGATAAAGGTCTCTTTATTGAAAGAGAGATAGTTGGTGAGCGGAAATG
ATTTACTGGCGCGAAACGAAATGTGCTGCGGTGTGACAGTTTTGGAGCAA
GGGGGGTACAATCCGTATCCATCGATAGAAGAAAAAATATAATGCATAA back to topCoding sequence (CDS) from alignment at chr5:598358..600106- >NO05G02250.1 ID=NO05G02250.1|Name=NO05G02250.1|organism=Nannochloropsis oceanica|type=CDS|length=954bp|location=Sequence derived from alignment at chr5:598358..600106- (Nannochloropsis oceanica) ATGGGTGAAAAGCAGACGAGCTTGGCTGAGACGATACAGCCTTTTGTCTG TGGCGGCGCGAGTGCTTGTTTCGCCAGCAGCATCATCCATCCCATCGACC TGGCGAAGGTGCGCCTCCAACTCTTCTCCACCCTCAACCCTGGCGTAAAG GCACCAGGCGCAGTGAGTGTCATCGTTAACTTGGTCAAAAACGACGGGTT AGCGGCGGCCTATGCGGGTTTGAGTGCCTCGCTGATGAGGCAAGCGATCT ACGGCACGGCACGCATTGGCTTGCATCGGACCTTTTCGGATAAACTAGAG AAAACCATGGGTGGGACAATCCCCTTCTGGATGAAGACCTTGAGCGGCAT GTTGTCAGGCGGCATCGCCGTCTGCATCGGCACGCCCTTCGACGTCGCCC TGGTGCGCATGCAGGCTGACTCCATGAAGCCCGTAGAGCTGCGCCGGAAC TACAAGAACGTGTTTGACGCGATCGGACGCATCTTCAGGGAGGAGGGGCC CAAACGGCTGTATGCGGGTTTGGCGCCCAATGTGCTGCGTGGGATGTCCA TGAACGTGGGTATGCTCGCGTGCTACGACCAGGCAAAGGACGCCATATCC GTGCACGTGACCAAGGACGCAGACCCAAAGAAGCCCTCCGTCGTCACCAA CCTCCTCTCCTCAGCCGTAGCCGGCTTCACCTCTGCCTTCTTCTCTCTAC CCTTCGACATGCTCAAATCCCGGATGCAGGACATGAAACCCGACGCCAAT GGCAAGATGCCCTACACGGGCCTGGCCGACTGTACGCTGTCCATCTTCAG AAAAGAGGGCCTGCTCGCCTTCTGGACAGGCTTTCCCGCTTACTACGGCC GATGCGCACCCCACGCCATGATTATCTTGCTGACCATTGAGCAGGTTACC AAAGTTTACCGTTCTGTCTTCGTGTTGGCGAAACCTGTGCCCCTTGCCTC ATAA back to top
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