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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr5 | genome | chr5:594430..596908 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G02230.1 vs.
Match: EWM28192.1 (x-ray repair cross-complementing protein 6 [Nannochloropsis gaditana]) HSP 1 Score: 602.8 bits (1553), Expect = 1.300e-168 Identity = 342/664 (51.51%), Postives = 452/664 (68.07%), Query Frame = 0
Query: 6 EDEEERD--EEEQEVMKDFQTMEDNLMVLIDARPAMLAKNADGKSPLRIAFELAQFVLRQKIMMSRRDWVGVVLFGVDKAVDDKSEENG-GQAGGSMTFGASQLLEGHTTELQPLGEPTAKRIKQLERLCQPDVDVAKELHLRWTDSSSFTSSSG-LRDGFRACLRMLETRSKKERDIRRIWLLTNEDDPSEPNNPSQVIKDAQEGGVDVRLWHFPHPDGRDFDERKLYGPVLSAASKQPFELDYIK-ADEEETESESKMVNVGSGDMTTLLGAAKGRLFKKRRYACTIWQVTDSPPLSINVALYKTIQPCKKPTPVQLAAATNRRLVPSTKWLCEELVQYIDLELEAAYGLDFGSSNTTVPFKRPEFEYTLRAGLSEPGLYLLGFVPSEELAWELNVTSSTTVYPEELSLKGCTRAFISLREAMLKRERMAVVRYQASAKSEPRLAVLLASLATKGLELVELPFLGDLRSVESPHLDCPPPPPEKEQLEAARKVVARLTLKPQQYSVGFNNPALEKFYSGLQALALEEAKTEWNEITDDSTWPSD-ELLGRAEEELEELWELSPDPRKGVQRGRGRKRKADAVTKTVKG--KLVAEKVSKAEDEDDEKIGGGGDRSVKD--------LSMGKLAKLTVPQLKEICRARGLPVSGKKGDIIDRL 654
+D E D +EE KDF +EDNLMVLIDARP ML +N G PL A + VL++KIM+++RD VG++LFG + AVD+K E G G A S SQ+ ELQ LG+PTAKRIKQ+ERLC D ++ L L+ +S+S LRDG RACLRMLE +S+KE D RRIWL TNEDDPS+ N+PSQVIKDA+EGGV++ +WHFP DGR+F+ K Y P+L+A ++ F D K ADE++ +KM++ GSGD+ +LL A+ LFKKRRY T ++ PP+S++VA YKTIQ C+KP PV+LAA +NRRL STKW+CE+LVQY+D EL+ A GL+FG T+P +E R +PGL+LL F+P+EELAWELNVTSST +YPEE++LKGCTRAF ++R+AML++ +MA+VR +A S PRLAVLLA AT GLEL+ LPFL DLR++ESPHL+ P P +Q EAA+ V++RL ++ ++Y G++NP L+KFY+GLQALALE+++ +WNE DD TWP + ELLGR E + LWE S DP K + G KRK+ TV G +L++ K K E +D K G SVK + L+KLTV +LK++C+ L VSG+K D+IDRL
Sbjct: 5 DDMEVNDSADEEDGFSKDFDVIEDNLMVLIDARPPMLVENVQGTVPLVTALGIIHHVLKRKIMINQRDHVGILLFGAE-AVDEKGEIVGSGNAKFSDMSRMSQVWGNQVHELQTLGQPTAKRIKQIERLCHEDTNIMNGLCLKHAQKLPGSSTSAALRDGLRACLRMLEGQSRKELDSRRIWLFTNEDDPSQVNDPSQVIKDAREGGVEMWVWHFPAQDGREFNRNKFYEPLLAAPTR--FVQDGYKIADEKDPGYCTKMIDAGSGDVNSLLLGARTPLFKKRRYVRTKLHISVDPPISLDVAFYKTIQRCRKPMPVKLAAVSNRRLATSTKWMCEDLVQYVDPELDVACGLEFGKGGVTIPLHSAAYEMKQRVCQRDPGLHLLAFLPAEELAWELNVTSSTLIYPEEMALKGCTRAFSAIRKAMLQQHKMALVRLHINAVSYPRLAVLLAPPATPGLELIVLPFLDDLRAIESPHLESLPALPSMDQKEAAKSVISRLAMRWEEYYQGYSNPGLQKFYAGLQALALEQSEVDWNESADDRTWPDEKELLGRTGEAMRGLWESSRDPDKVLNGGSSGKRKS-----TVAGVDRLLSLKKEKREVKDSGKAEKGHHDSVKSEFEAFEGAQTREGLSKLTVRKLKDLCQELKLHVSGRKDDLIDRL 660
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G02230.1 ID=NO05G02230.1|Name=NO05G02230.1|organism=Nannochloropsis oceanica|type=mRNA|length=2245bp ACACAGTTACACAAGTACAAGAGAAAACAAAGGCATTGCGGACGCATGTC ACCGTACTACGAAGACGAAGAGGAAAGGGACGAGGAAGAGCAAGAGGTTA TGAAGGACTTCCAGACGATGGAGGACAATTTGATGGTGCTGATTGATGCC CGCCCAGCGATGCTGGCTAAGAACGCGGACGGTAAGTCCCCGCTAAGAAT TGCTTTTGAACTGGCGCAGTTCGTGCTGCGACAGAAGATTATGATGAGTC GTCGGGACTGGGTCGGAGTTGTGCTTTTCGGGGTAGATAAGGCAGTGGAT GATAAGTCGGAGGAAAATGGCGGCCAAGCAGGAGGTTCGATGACATTCGG CGCCAGCCAATTGCTTGAGGGCCATACGACCGAGTTGCAACCCTTGGGGG AACCGACCGCCAAACGCATCAAGCAACTGGAGCGGCTGTGCCAACCCGAC GTCGATGTTGCCAAGGAATTGCATTTAAGGTGGACAGACTCCTCCTCTTT TACCTCTTCATCCGGCTTACGGGACGGGTTCCGAGCGTGTCTGCGGATGC TGGAGACCCGGTCCAAAAAGGAACGGGACATTCGGCGCATCTGGCTTCTC ACCAACGAGGACGACCCCTCGGAGCCCAACAACCCAAGCCAAGTAATAAA AGATGCCCAAGAGGGAGGGGTGGATGTACGCTTGTGGCATTTTCCTCATC CCGACGGCCGGGATTTCGACGAGCGAAAGCTTTATGGGCCCGTGCTCTCC GCCGCGAGTAAGCAGCCCTTCGAACTAGACTACATCAAGGCAGACGAGGA AGAGACCGAGTCCGAGTCGAAGATGGTAAATGTCGGGAGCGGGGACATGA CAACTCTGCTGGGGGCAGCCAAGGGTCGACTATTTAAGAAGCGTCGCTAC GCCTGCACCATCTGGCAAGTTACTGACTCGCCTCCCCTCTCCATCAACGT TGCCCTTTACAAGACCATCCAACCCTGTAAAAAACCCACGCCCGTGCAGC TGGCCGCGGCTACAAATCGACGGCTAGTTCCGAGCACCAAGTGGCTATGT GAGGAGCTGGTGCAATACATTGACTTGGAGCTGGAGGCAGCTTACGGCCT TGACTTCGGGTCCTCCAACACCACCGTCCCCTTCAAACGCCCTGAGTTTG AATACACCCTCCGCGCTGGTCTTAGCGAGCCCGGGCTCTATTTGCTGGGA TTTGTGCCCTCTGAGGAGCTGGCATGGGAGCTGAACGTGACGAGCAGCAC GACGGTCTACCCAGAAGAGCTCTCGCTCAAGGGTTGCACTCGTGCCTTCA TCTCCCTGCGGGAGGCGATGCTGAAGCGTGAGCGGATGGCAGTGGTCCGG TATCAGGCGTCGGCAAAGTCAGAGCCTCGTCTAGCTGTGCTACTTGCTTC ATTGGCAACCAAGGGTTTAGAATTGGTTGAGTTGCCTTTCTTGGGCGATC TGCGTTCTGTGGAGAGCCCGCATCTGGACTGTCCCCCGCCGCCGCCGGAG AAAGAACAGCTGGAGGCAGCTAGGAAGGTGGTGGCGCGCTTGACTTTAAA GCCACAGCAGTACTCTGTGGGCTTCAATAATCCGGCCTTGGAAAAGTTTT ACTCGGGTTTGCAGGCGTTGGCGCTGGAGGAGGCAAAGACGGAGTGGAAT GAGATAACGGATGACAGCACCTGGCCCTCGGACGAGTTGCTTGGCCGAGC AGAAGAAGAGTTGGAGGAGCTGTGGGAACTGTCTCCTGATCCAAGAAAGG GTGTGCAGAGGGGGAGGGGGAGGAAGCGGAAGGCAGATGCAGTGACGAAA ACTGTTAAGGGTAAGCTGGTCGCTGAGAAGGTCAGCAAGGCTGAAGACGA GGATGATGAGAAGATAGGAGGCGGTGGCGATAGATCGGTGAAGGACCTTT CGATGGGAAAGCTGGCCAAACTGACGGTTCCTCAACTGAAGGAGATCTGT CGTGCACGTGGGTTGCCCGTGTCAGGCAAGAAGGGAGACATCATCGATCG TTTACAGATGGACCTCGAGACCGATGATGACTTGTGATGAGACGAGGCAA GTGTTTCTGGTAGAGGAATATTTTAAGAAGAGTATGTGAATATCATGTGG ATATATGGACGATCAGAACAAAACTAAAGAGTTGTGCAATAGAGAGACGA GGGGGAACCGGAGAATAAGGACCCCCGCCTTAGCGCAGCCTTTCAAACCC AGGACAGCGACAGTCACATAAAAGAAACATAACATATAAATAAAT back to topprotein sequence of NO05G02230.1 >NO05G02230.1-protein ID=NO05G02230.1-protein|Name=NO05G02230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=664bp MSPYYEDEEERDEEEQEVMKDFQTMEDNLMVLIDARPAMLAKNADGKSPL RIAFELAQFVLRQKIMMSRRDWVGVVLFGVDKAVDDKSEENGGQAGGSMT FGASQLLEGHTTELQPLGEPTAKRIKQLERLCQPDVDVAKELHLRWTDSS SFTSSSGLRDGFRACLRMLETRSKKERDIRRIWLLTNEDDPSEPNNPSQV IKDAQEGGVDVRLWHFPHPDGRDFDERKLYGPVLSAASKQPFELDYIKAD EEETESESKMVNVGSGDMTTLLGAAKGRLFKKRRYACTIWQVTDSPPLSI NVALYKTIQPCKKPTPVQLAAATNRRLVPSTKWLCEELVQYIDLELEAAY GLDFGSSNTTVPFKRPEFEYTLRAGLSEPGLYLLGFVPSEELAWELNVTS STTVYPEELSLKGCTRAFISLREAMLKRERMAVVRYQASAKSEPRLAVLL ASLATKGLELVELPFLGDLRSVESPHLDCPPPPPEKEQLEAARKVVARLT LKPQQYSVGFNNPALEKFYSGLQALALEEAKTEWNEITDDSTWPSDELLG RAEEELEELWELSPDPRKGVQRGRGRKRKADAVTKTVKGKLVAEKVSKAE DEDDEKIGGGGDRSVKDLSMGKLAKLTVPQLKEICRARGLPVSGKKGDII DRLQMDLETDDDL* back to topmRNA from alignment at chr5:594430..596908- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G02230.1 ID=NO05G02230.1|Name=NO05G02230.1|organism=Nannochloropsis oceanica|type=mRNA|length=2479bp|location=Sequence derived from alignment at chr5:594430..596908- (Nannochloropsis oceanica) ACACAGTTACACAAGTACAAGAGAAAACAAAGGCATTGCGGACGCATGTC
ACCGTACTACGAAGACGAAGAGGAAAGGGACGAGGAAGAGCAAGAGGTTA
TGAAGGACTTCCAGACGATGGAGGACAATTTGATGGTGCTGATTGATGCC
CGCCCAGCGATGCTGGCTAAGAACGCGGACGGTAAGGTACGTGCTAATGA
GGAGAGACTGCAGGGCGAATGAGGTGGATTGGAAGCGGCATCAATTGAAC
ACAGCCTGCCGGCTAGGGAATGTCGCGCTTCTCATCACAAGGAGGGTACG
CGAAAGGGGTGGACCTGGCTCATGGGATCTGTTCATATTACTTGTGTTCA
TGCCGCTCGATTTTGCATATGTATATCCCACCCCTTCCCATTTTCTCCCT
CTTTTCCTTCCTCTATCTAGTCCCCGCTAAGAATTGCTTTTGAACTGGCG
CAGTTCGTGCTGCGACAGAAGATTATGATGAGTCGTCGGGACTGGGTCGG
AGTTGTGCTTTTCGGGGTAGATAAGGCAGTGGATGATAAGTCGGAGGAAA
ATGGCGGCCAAGCAGGAGGTTCGATGACATTCGGCGCCAGCCAATTGCTT
GAGGGCCATACGACCGAGTTGCAACCCTTGGGGGAACCGACCGCCAAACG
CATCAAGCAACTGGAGCGGCTGTGCCAACCCGACGTCGATGTTGCCAAGG
AATTGCATTTAAGGTGGACAGACTCCTCCTCTTTTACCTCTTCATCCGGC
TTACGGGACGGGTTCCGAGCGTGTCTGCGGATGCTGGAGACCCGGTCCAA
AAAGGAACGGGACATTCGGCGCATCTGGCTTCTCACCAACGAGGACGACC
CCTCGGAGCCCAACAACCCAAGCCAAGTAATAAAAGATGCCCAAGAGGGA
GGGGTGGATGTACGCTTGTGGCATTTTCCTCATCCCGACGGCCGGGATTT
CGACGAGCGAAAGCTTTATGGGCCCGTGCTCTCCGCCGCGAGTAAGCAGC
CCTTCGAACTAGACTACATCAAGGCAGACGAGGAAGAGACCGAGTCCGAG
TCGAAGATGGTAAATGTCGGGAGCGGGGACATGACAACTCTGCTGGGGGC
AGCCAAGGGTCGACTATTTAAGAAGCGTCGCTACGCCTGCACCATCTGGC
AAGTTACTGACTCGCCTCCCCTCTCCATCAACGTTGCCCTTTACAAGACC
ATCCAACCCTGTAAAAAACCCACGCCCGTGCAGCTGGCCGCGGCTACAAA
TCGACGGCTAGTTCCGAGCACCAAGTGGCTATGTGAGGAGCTGGTGCAAT
ACATTGACTTGGAGCTGGAGGCAGCTTACGGCCTTGACTTCGGGTCCTCC
AACACCACCGTCCCCTTCAAACGCCCTGAGTTTGAATACACCCTCCGCGC
TGGTCTTAGCGAGCCCGGGCTCTATTTGCTGGGATTTGTGCCCTCTGAGG
AGCTGGCATGGGAGCTGAACGTGACGAGCAGCACGACGGTCTACCCAGAA
GAGCTCTCGCTCAAGGGTTGCACTCGTGCCTTCATCTCCCTGCGGGAGGC
GATGCTGAAGCGTGAGCGGATGGCAGTGGTCCGGTATCAGGCGTCGGCAA
AGTCAGAGCCTCGTCTAGCTGTGCTACTTGCTTCATTGGCAACCAAGGGT
TTAGAATTGGTTGAGTTGCCTTTCTTGGGCGATCTGCGTTCTGTGGAGAG
CCCGCATCTGGACTGTCCCCCGCCGCCGCCGGAGAAAGAACAGCTGGAGG
CAGCTAGGAAGGTGGTGGCGCGCTTGACTTTAAAGCCACAGCAGTACTCT
GTGGGCTTCAATAATCCGGCCTTGGAAAAGTTTTACTCGGGTTTGCAGGC
GTTGGCGCTGGAGGAGGCAAAGACGGAGTGGAATGAGATAACGGATGACA
GCACCTGGCCCTCGGACGAGTTGCTTGGCCGAGCAGAAGAAGAGTTGGAG
GAGCTGTGGGAACTGTCTCCTGATCCAAGAAAGGGTGTGCAGAGGGGGAG
GGGGAGGAAGCGGAAGGCAGATGCAGTGACGAAAACTGTTAAGGGTAAGC
TGGTCGCTGAGAAGGTCAGCAAGGCTGAAGACGAGGATGATGAGAAGATA
GGAGGCGGTGGCGATAGATCGGTGAAGGACCTTTCGATGGGAAAGCTGGC
CAAACTGACGGTTCCTCAACTGAAGGAGATCTGTCGTGCACGTGGGTTGC
CCGTGTCAGGCAAGAAGGGAGACATCATCGATCGTTTACAGATGGACCTC
GAGACCGATGATGACTTGTGATGAGACGAGGCAAGTGTTTCTGGTAGAGG
AATATTTTAAGAAGAGTATGTGAATATCATGTGGATATATGGACGATCAG
AACAAAACTAAAGAGTTGTGCAATAGAGAGACGAGGGGGAACCGGAGAAT
AAGGACCCCCGCCTTAGCGCAGCCTTTCAAACCCAGGACAGCGACAGTCA
CATAAAAGAAACATAACATATAAATAAAT back to topCoding sequence (CDS) from alignment at chr5:594430..596908- >NO05G02230.1 ID=NO05G02230.1|Name=NO05G02230.1|organism=Nannochloropsis oceanica|type=CDS|length=1992bp|location=Sequence derived from alignment at chr5:594430..596908- (Nannochloropsis oceanica) ATGTCACCGTACTACGAAGACGAAGAGGAAAGGGACGAGGAAGAGCAAGA GGTTATGAAGGACTTCCAGACGATGGAGGACAATTTGATGGTGCTGATTG ATGCCCGCCCAGCGATGCTGGCTAAGAACGCGGACGGTAAGTCCCCGCTA AGAATTGCTTTTGAACTGGCGCAGTTCGTGCTGCGACAGAAGATTATGAT GAGTCGTCGGGACTGGGTCGGAGTTGTGCTTTTCGGGGTAGATAAGGCAG TGGATGATAAGTCGGAGGAAAATGGCGGCCAAGCAGGAGGTTCGATGACA TTCGGCGCCAGCCAATTGCTTGAGGGCCATACGACCGAGTTGCAACCCTT GGGGGAACCGACCGCCAAACGCATCAAGCAACTGGAGCGGCTGTGCCAAC CCGACGTCGATGTTGCCAAGGAATTGCATTTAAGGTGGACAGACTCCTCC TCTTTTACCTCTTCATCCGGCTTACGGGACGGGTTCCGAGCGTGTCTGCG GATGCTGGAGACCCGGTCCAAAAAGGAACGGGACATTCGGCGCATCTGGC TTCTCACCAACGAGGACGACCCCTCGGAGCCCAACAACCCAAGCCAAGTA ATAAAAGATGCCCAAGAGGGAGGGGTGGATGTACGCTTGTGGCATTTTCC TCATCCCGACGGCCGGGATTTCGACGAGCGAAAGCTTTATGGGCCCGTGC TCTCCGCCGCGAGTAAGCAGCCCTTCGAACTAGACTACATCAAGGCAGAC GAGGAAGAGACCGAGTCCGAGTCGAAGATGGTAAATGTCGGGAGCGGGGA CATGACAACTCTGCTGGGGGCAGCCAAGGGTCGACTATTTAAGAAGCGTC GCTACGCCTGCACCATCTGGCAAGTTACTGACTCGCCTCCCCTCTCCATC AACGTTGCCCTTTACAAGACCATCCAACCCTGTAAAAAACCCACGCCCGT GCAGCTGGCCGCGGCTACAAATCGACGGCTAGTTCCGAGCACCAAGTGGC TATGTGAGGAGCTGGTGCAATACATTGACTTGGAGCTGGAGGCAGCTTAC GGCCTTGACTTCGGGTCCTCCAACACCACCGTCCCCTTCAAACGCCCTGA GTTTGAATACACCCTCCGCGCTGGTCTTAGCGAGCCCGGGCTCTATTTGC TGGGATTTGTGCCCTCTGAGGAGCTGGCATGGGAGCTGAACGTGACGAGC AGCACGACGGTCTACCCAGAAGAGCTCTCGCTCAAGGGTTGCACTCGTGC CTTCATCTCCCTGCGGGAGGCGATGCTGAAGCGTGAGCGGATGGCAGTGG TCCGGTATCAGGCGTCGGCAAAGTCAGAGCCTCGTCTAGCTGTGCTACTT GCTTCATTGGCAACCAAGGGTTTAGAATTGGTTGAGTTGCCTTTCTTGGG CGATCTGCGTTCTGTGGAGAGCCCGCATCTGGACTGTCCCCCGCCGCCGC CGGAGAAAGAACAGCTGGAGGCAGCTAGGAAGGTGGTGGCGCGCTTGACT TTAAAGCCACAGCAGTACTCTGTGGGCTTCAATAATCCGGCCTTGGAAAA GTTTTACTCGGGTTTGCAGGCGTTGGCGCTGGAGGAGGCAAAGACGGAGT GGAATGAGATAACGGATGACAGCACCTGGCCCTCGGACGAGTTGCTTGGC CGAGCAGAAGAAGAGTTGGAGGAGCTGTGGGAACTGTCTCCTGATCCAAG AAAGGGTGTGCAGAGGGGGAGGGGGAGGAAGCGGAAGGCAGATGCAGTGA CGAAAACTGTTAAGGGTAAGCTGGTCGCTGAGAAGGTCAGCAAGGCTGAA GACGAGGATGATGAGAAGATAGGAGGCGGTGGCGATAGATCGGTGAAGGA CCTTTCGATGGGAAAGCTGGCCAAACTGACGGTTCCTCAACTGAAGGAGA TCTGTCGTGCACGTGGGTTGCCCGTGTCAGGCAAGAAGGGAGACATCATC GATCGTTTACAGATGGACCTCGAGACCGATGATGACTTGTGA back to top
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