NO05G02230.1, NO05G02230.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G02230.1
Unique NameNO05G02230.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2245
Alignment locationchr5:594430..596908 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:594430..596908 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO05G02230.1 vs.
Match: EWM28192.1 (x-ray repair cross-complementing protein 6 [Nannochloropsis gaditana])

HSP 1 Score: 602.8 bits (1553), Expect = 1.300e-168
Identity = 342/664 (51.51%), Postives = 452/664 (68.07%), Query Frame = 0
Query:    6 EDEEERD--EEEQEVMKDFQTMEDNLMVLIDARPAMLAKNADGKSPLRIAFELAQFVLRQKIMMSRRDWVGVVLFGVDKAVDDKSEENG-GQAGGSMTFGASQLLEGHTTELQPLGEPTAKRIKQLERLCQPDVDVAKELHLRWTDSSSFTSSSG-LRDGFRACLRMLETRSKKERDIRRIWLLTNEDDPSEPNNPSQVIKDAQEGGVDVRLWHFPHPDGRDFDERKLYGPVLSAASKQPFELDYIK-ADEEETESESKMVNVGSGDMTTLLGAAKGRLFKKRRYACTIWQVTDSPPLSINVALYKTIQPCKKPTPVQLAAATNRRLVPSTKWLCEELVQYIDLELEAAYGLDFGSSNTTVPFKRPEFEYTLRAGLSEPGLYLLGFVPSEELAWELNVTSSTTVYPEELSLKGCTRAFISLREAMLKRERMAVVRYQASAKSEPRLAVLLASLATKGLELVELPFLGDLRSVESPHLDCPPPPPEKEQLEAARKVVARLTLKPQQYSVGFNNPALEKFYSGLQALALEEAKTEWNEITDDSTWPSD-ELLGRAEEELEELWELSPDPRKGVQRGRGRKRKADAVTKTVKG--KLVAEKVSKAEDEDDEKIGGGGDRSVKD--------LSMGKLAKLTVPQLKEICRARGLPVSGKKGDIIDRL 654
            +D E  D  +EE    KDF  +EDNLMVLIDARP ML +N  G  PL  A  +   VL++KIM+++RD VG++LFG + AVD+K E  G G A  S     SQ+      ELQ LG+PTAKRIKQ+ERLC  D ++   L L+       +S+S  LRDG RACLRMLE +S+KE D RRIWL TNEDDPS+ N+PSQVIKDA+EGGV++ +WHFP  DGR+F+  K Y P+L+A ++  F  D  K ADE++    +KM++ GSGD+ +LL  A+  LFKKRRY  T   ++  PP+S++VA YKTIQ C+KP PV+LAA +NRRL  STKW+CE+LVQY+D EL+ A GL+FG    T+P     +E   R    +PGL+LL F+P+EELAWELNVTSST +YPEE++LKGCTRAF ++R+AML++ +MA+VR   +A S PRLAVLLA  AT GLEL+ LPFL DLR++ESPHL+  P  P  +Q EAA+ V++RL ++ ++Y  G++NP L+KFY+GLQALALE+++ +WNE  DD TWP + ELLGR  E +  LWE S DP K +  G   KRK+     TV G  +L++ K  K E +D  K   G   SVK          +   L+KLTV +LK++C+   L VSG+K D+IDRL
Sbjct:    5 DDMEVNDSADEEDGFSKDFDVIEDNLMVLIDARPPMLVENVQGTVPLVTALGIIHHVLKRKIMINQRDHVGILLFGAE-AVDEKGEIVGSGNAKFSDMSRMSQVWGNQVHELQTLGQPTAKRIKQIERLCHEDTNIMNGLCLKHAQKLPGSSTSAALRDGLRACLRMLEGQSRKELDSRRIWLFTNEDDPSQVNDPSQVIKDAREGGVEMWVWHFPAQDGREFNRNKFYEPLLAAPTR--FVQDGYKIADEKDPGYCTKMIDAGSGDVNSLLLGARTPLFKKRRYVRTKLHISVDPPISLDVAFYKTIQRCRKPMPVKLAAVSNRRLATSTKWMCEDLVQYVDPELDVACGLEFGKGGVTIPLHSAAYEMKQRVCQRDPGLHLLAFLPAEELAWELNVTSSTLIYPEEMALKGCTRAFSAIRKAMLQQHKMALVRLHINAVSYPRLAVLLAPPATPGLELIVLPFLDDLRAIESPHLESLPALPSMDQKEAAKSVISRLAMRWEEYYQGYSNPGLQKFYAGLQALALEQSEVDWNESADDRTWPDEKELLGRTGEAMRGLWESSRDPDKVLNGGSSGKRKS-----TVAGVDRLLSLKKEKREVKDSGKAEKGHHDSVKSEFEAFEGAQTREGLSKLTVRKLKDLCQELKLHVSGRKDDLIDRL 660          
The following BLAST results are available for this feature:
BLAST of NO05G02230.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28192.11.300e-16851.51x-ray repair cross-complementing protein 6 [Nannoc... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G02230NO05G02230Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G02230.1NO05G02230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G02230.1.cds1NO05G02230.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02230.1.cds2NO05G02230.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G02230.1 ID=NO05G02230.1|Name=NO05G02230.1|organism=Nannochloropsis oceanica|type=mRNA|length=2245bp
ACACAGTTACACAAGTACAAGAGAAAACAAAGGCATTGCGGACGCATGTC
ACCGTACTACGAAGACGAAGAGGAAAGGGACGAGGAAGAGCAAGAGGTTA
TGAAGGACTTCCAGACGATGGAGGACAATTTGATGGTGCTGATTGATGCC
CGCCCAGCGATGCTGGCTAAGAACGCGGACGGTAAGTCCCCGCTAAGAAT
TGCTTTTGAACTGGCGCAGTTCGTGCTGCGACAGAAGATTATGATGAGTC
GTCGGGACTGGGTCGGAGTTGTGCTTTTCGGGGTAGATAAGGCAGTGGAT
GATAAGTCGGAGGAAAATGGCGGCCAAGCAGGAGGTTCGATGACATTCGG
CGCCAGCCAATTGCTTGAGGGCCATACGACCGAGTTGCAACCCTTGGGGG
AACCGACCGCCAAACGCATCAAGCAACTGGAGCGGCTGTGCCAACCCGAC
GTCGATGTTGCCAAGGAATTGCATTTAAGGTGGACAGACTCCTCCTCTTT
TACCTCTTCATCCGGCTTACGGGACGGGTTCCGAGCGTGTCTGCGGATGC
TGGAGACCCGGTCCAAAAAGGAACGGGACATTCGGCGCATCTGGCTTCTC
ACCAACGAGGACGACCCCTCGGAGCCCAACAACCCAAGCCAAGTAATAAA
AGATGCCCAAGAGGGAGGGGTGGATGTACGCTTGTGGCATTTTCCTCATC
CCGACGGCCGGGATTTCGACGAGCGAAAGCTTTATGGGCCCGTGCTCTCC
GCCGCGAGTAAGCAGCCCTTCGAACTAGACTACATCAAGGCAGACGAGGA
AGAGACCGAGTCCGAGTCGAAGATGGTAAATGTCGGGAGCGGGGACATGA
CAACTCTGCTGGGGGCAGCCAAGGGTCGACTATTTAAGAAGCGTCGCTAC
GCCTGCACCATCTGGCAAGTTACTGACTCGCCTCCCCTCTCCATCAACGT
TGCCCTTTACAAGACCATCCAACCCTGTAAAAAACCCACGCCCGTGCAGC
TGGCCGCGGCTACAAATCGACGGCTAGTTCCGAGCACCAAGTGGCTATGT
GAGGAGCTGGTGCAATACATTGACTTGGAGCTGGAGGCAGCTTACGGCCT
TGACTTCGGGTCCTCCAACACCACCGTCCCCTTCAAACGCCCTGAGTTTG
AATACACCCTCCGCGCTGGTCTTAGCGAGCCCGGGCTCTATTTGCTGGGA
TTTGTGCCCTCTGAGGAGCTGGCATGGGAGCTGAACGTGACGAGCAGCAC
GACGGTCTACCCAGAAGAGCTCTCGCTCAAGGGTTGCACTCGTGCCTTCA
TCTCCCTGCGGGAGGCGATGCTGAAGCGTGAGCGGATGGCAGTGGTCCGG
TATCAGGCGTCGGCAAAGTCAGAGCCTCGTCTAGCTGTGCTACTTGCTTC
ATTGGCAACCAAGGGTTTAGAATTGGTTGAGTTGCCTTTCTTGGGCGATC
TGCGTTCTGTGGAGAGCCCGCATCTGGACTGTCCCCCGCCGCCGCCGGAG
AAAGAACAGCTGGAGGCAGCTAGGAAGGTGGTGGCGCGCTTGACTTTAAA
GCCACAGCAGTACTCTGTGGGCTTCAATAATCCGGCCTTGGAAAAGTTTT
ACTCGGGTTTGCAGGCGTTGGCGCTGGAGGAGGCAAAGACGGAGTGGAAT
GAGATAACGGATGACAGCACCTGGCCCTCGGACGAGTTGCTTGGCCGAGC
AGAAGAAGAGTTGGAGGAGCTGTGGGAACTGTCTCCTGATCCAAGAAAGG
GTGTGCAGAGGGGGAGGGGGAGGAAGCGGAAGGCAGATGCAGTGACGAAA
ACTGTTAAGGGTAAGCTGGTCGCTGAGAAGGTCAGCAAGGCTGAAGACGA
GGATGATGAGAAGATAGGAGGCGGTGGCGATAGATCGGTGAAGGACCTTT
CGATGGGAAAGCTGGCCAAACTGACGGTTCCTCAACTGAAGGAGATCTGT
CGTGCACGTGGGTTGCCCGTGTCAGGCAAGAAGGGAGACATCATCGATCG
TTTACAGATGGACCTCGAGACCGATGATGACTTGTGATGAGACGAGGCAA
GTGTTTCTGGTAGAGGAATATTTTAAGAAGAGTATGTGAATATCATGTGG
ATATATGGACGATCAGAACAAAACTAAAGAGTTGTGCAATAGAGAGACGA
GGGGGAACCGGAGAATAAGGACCCCCGCCTTAGCGCAGCCTTTCAAACCC
AGGACAGCGACAGTCACATAAAAGAAACATAACATATAAATAAAT
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protein sequence of NO05G02230.1

>NO05G02230.1-protein ID=NO05G02230.1-protein|Name=NO05G02230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=664bp
MSPYYEDEEERDEEEQEVMKDFQTMEDNLMVLIDARPAMLAKNADGKSPL
RIAFELAQFVLRQKIMMSRRDWVGVVLFGVDKAVDDKSEENGGQAGGSMT
FGASQLLEGHTTELQPLGEPTAKRIKQLERLCQPDVDVAKELHLRWTDSS
SFTSSSGLRDGFRACLRMLETRSKKERDIRRIWLLTNEDDPSEPNNPSQV
IKDAQEGGVDVRLWHFPHPDGRDFDERKLYGPVLSAASKQPFELDYIKAD
EEETESESKMVNVGSGDMTTLLGAAKGRLFKKRRYACTIWQVTDSPPLSI
NVALYKTIQPCKKPTPVQLAAATNRRLVPSTKWLCEELVQYIDLELEAAY
GLDFGSSNTTVPFKRPEFEYTLRAGLSEPGLYLLGFVPSEELAWELNVTS
STTVYPEELSLKGCTRAFISLREAMLKRERMAVVRYQASAKSEPRLAVLL
ASLATKGLELVELPFLGDLRSVESPHLDCPPPPPEKEQLEAARKVVARLT
LKPQQYSVGFNNPALEKFYSGLQALALEEAKTEWNEITDDSTWPSDELLG
RAEEELEELWELSPDPRKGVQRGRGRKRKADAVTKTVKGKLVAEKVSKAE
DEDDEKIGGGGDRSVKDLSMGKLAKLTVPQLKEICRARGLPVSGKKGDII
DRLQMDLETDDDL*
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mRNA from alignment at chr5:594430..596908-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G02230.1 ID=NO05G02230.1|Name=NO05G02230.1|organism=Nannochloropsis oceanica|type=mRNA|length=2479bp|location=Sequence derived from alignment at chr5:594430..596908- (Nannochloropsis oceanica)
ACACAGTTACACAAGTACAAGAGAAAACAAAGGCATTGCGGACGCATGTC ACCGTACTACGAAGACGAAGAGGAAAGGGACGAGGAAGAGCAAGAGGTTA TGAAGGACTTCCAGACGATGGAGGACAATTTGATGGTGCTGATTGATGCC CGCCCAGCGATGCTGGCTAAGAACGCGGACGGTAAGGTACGTGCTAATGA GGAGAGACTGCAGGGCGAATGAGGTGGATTGGAAGCGGCATCAATTGAAC ACAGCCTGCCGGCTAGGGAATGTCGCGCTTCTCATCACAAGGAGGGTACG CGAAAGGGGTGGACCTGGCTCATGGGATCTGTTCATATTACTTGTGTTCA TGCCGCTCGATTTTGCATATGTATATCCCACCCCTTCCCATTTTCTCCCT CTTTTCCTTCCTCTATCTAGTCCCCGCTAAGAATTGCTTTTGAACTGGCG CAGTTCGTGCTGCGACAGAAGATTATGATGAGTCGTCGGGACTGGGTCGG AGTTGTGCTTTTCGGGGTAGATAAGGCAGTGGATGATAAGTCGGAGGAAA ATGGCGGCCAAGCAGGAGGTTCGATGACATTCGGCGCCAGCCAATTGCTT GAGGGCCATACGACCGAGTTGCAACCCTTGGGGGAACCGACCGCCAAACG CATCAAGCAACTGGAGCGGCTGTGCCAACCCGACGTCGATGTTGCCAAGG AATTGCATTTAAGGTGGACAGACTCCTCCTCTTTTACCTCTTCATCCGGC TTACGGGACGGGTTCCGAGCGTGTCTGCGGATGCTGGAGACCCGGTCCAA AAAGGAACGGGACATTCGGCGCATCTGGCTTCTCACCAACGAGGACGACC CCTCGGAGCCCAACAACCCAAGCCAAGTAATAAAAGATGCCCAAGAGGGA GGGGTGGATGTACGCTTGTGGCATTTTCCTCATCCCGACGGCCGGGATTT CGACGAGCGAAAGCTTTATGGGCCCGTGCTCTCCGCCGCGAGTAAGCAGC CCTTCGAACTAGACTACATCAAGGCAGACGAGGAAGAGACCGAGTCCGAG TCGAAGATGGTAAATGTCGGGAGCGGGGACATGACAACTCTGCTGGGGGC AGCCAAGGGTCGACTATTTAAGAAGCGTCGCTACGCCTGCACCATCTGGC AAGTTACTGACTCGCCTCCCCTCTCCATCAACGTTGCCCTTTACAAGACC ATCCAACCCTGTAAAAAACCCACGCCCGTGCAGCTGGCCGCGGCTACAAA TCGACGGCTAGTTCCGAGCACCAAGTGGCTATGTGAGGAGCTGGTGCAAT ACATTGACTTGGAGCTGGAGGCAGCTTACGGCCTTGACTTCGGGTCCTCC AACACCACCGTCCCCTTCAAACGCCCTGAGTTTGAATACACCCTCCGCGC TGGTCTTAGCGAGCCCGGGCTCTATTTGCTGGGATTTGTGCCCTCTGAGG AGCTGGCATGGGAGCTGAACGTGACGAGCAGCACGACGGTCTACCCAGAA GAGCTCTCGCTCAAGGGTTGCACTCGTGCCTTCATCTCCCTGCGGGAGGC GATGCTGAAGCGTGAGCGGATGGCAGTGGTCCGGTATCAGGCGTCGGCAA AGTCAGAGCCTCGTCTAGCTGTGCTACTTGCTTCATTGGCAACCAAGGGT TTAGAATTGGTTGAGTTGCCTTTCTTGGGCGATCTGCGTTCTGTGGAGAG CCCGCATCTGGACTGTCCCCCGCCGCCGCCGGAGAAAGAACAGCTGGAGG CAGCTAGGAAGGTGGTGGCGCGCTTGACTTTAAAGCCACAGCAGTACTCT GTGGGCTTCAATAATCCGGCCTTGGAAAAGTTTTACTCGGGTTTGCAGGC GTTGGCGCTGGAGGAGGCAAAGACGGAGTGGAATGAGATAACGGATGACA GCACCTGGCCCTCGGACGAGTTGCTTGGCCGAGCAGAAGAAGAGTTGGAG GAGCTGTGGGAACTGTCTCCTGATCCAAGAAAGGGTGTGCAGAGGGGGAG GGGGAGGAAGCGGAAGGCAGATGCAGTGACGAAAACTGTTAAGGGTAAGC TGGTCGCTGAGAAGGTCAGCAAGGCTGAAGACGAGGATGATGAGAAGATA GGAGGCGGTGGCGATAGATCGGTGAAGGACCTTTCGATGGGAAAGCTGGC CAAACTGACGGTTCCTCAACTGAAGGAGATCTGTCGTGCACGTGGGTTGC CCGTGTCAGGCAAGAAGGGAGACATCATCGATCGTTTACAGATGGACCTC GAGACCGATGATGACTTGTGATGAGACGAGGCAAGTGTTTCTGGTAGAGG AATATTTTAAGAAGAGTATGTGAATATCATGTGGATATATGGACGATCAG AACAAAACTAAAGAGTTGTGCAATAGAGAGACGAGGGGGAACCGGAGAAT AAGGACCCCCGCCTTAGCGCAGCCTTTCAAACCCAGGACAGCGACAGTCA CATAAAAGAAACATAACATATAAATAAAT
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Coding sequence (CDS) from alignment at chr5:594430..596908-

>NO05G02230.1 ID=NO05G02230.1|Name=NO05G02230.1|organism=Nannochloropsis oceanica|type=CDS|length=1992bp|location=Sequence derived from alignment at chr5:594430..596908- (Nannochloropsis oceanica)
ATGTCACCGTACTACGAAGACGAAGAGGAAAGGGACGAGGAAGAGCAAGA
GGTTATGAAGGACTTCCAGACGATGGAGGACAATTTGATGGTGCTGATTG
ATGCCCGCCCAGCGATGCTGGCTAAGAACGCGGACGGTAAGTCCCCGCTA
AGAATTGCTTTTGAACTGGCGCAGTTCGTGCTGCGACAGAAGATTATGAT
GAGTCGTCGGGACTGGGTCGGAGTTGTGCTTTTCGGGGTAGATAAGGCAG
TGGATGATAAGTCGGAGGAAAATGGCGGCCAAGCAGGAGGTTCGATGACA
TTCGGCGCCAGCCAATTGCTTGAGGGCCATACGACCGAGTTGCAACCCTT
GGGGGAACCGACCGCCAAACGCATCAAGCAACTGGAGCGGCTGTGCCAAC
CCGACGTCGATGTTGCCAAGGAATTGCATTTAAGGTGGACAGACTCCTCC
TCTTTTACCTCTTCATCCGGCTTACGGGACGGGTTCCGAGCGTGTCTGCG
GATGCTGGAGACCCGGTCCAAAAAGGAACGGGACATTCGGCGCATCTGGC
TTCTCACCAACGAGGACGACCCCTCGGAGCCCAACAACCCAAGCCAAGTA
ATAAAAGATGCCCAAGAGGGAGGGGTGGATGTACGCTTGTGGCATTTTCC
TCATCCCGACGGCCGGGATTTCGACGAGCGAAAGCTTTATGGGCCCGTGC
TCTCCGCCGCGAGTAAGCAGCCCTTCGAACTAGACTACATCAAGGCAGAC
GAGGAAGAGACCGAGTCCGAGTCGAAGATGGTAAATGTCGGGAGCGGGGA
CATGACAACTCTGCTGGGGGCAGCCAAGGGTCGACTATTTAAGAAGCGTC
GCTACGCCTGCACCATCTGGCAAGTTACTGACTCGCCTCCCCTCTCCATC
AACGTTGCCCTTTACAAGACCATCCAACCCTGTAAAAAACCCACGCCCGT
GCAGCTGGCCGCGGCTACAAATCGACGGCTAGTTCCGAGCACCAAGTGGC
TATGTGAGGAGCTGGTGCAATACATTGACTTGGAGCTGGAGGCAGCTTAC
GGCCTTGACTTCGGGTCCTCCAACACCACCGTCCCCTTCAAACGCCCTGA
GTTTGAATACACCCTCCGCGCTGGTCTTAGCGAGCCCGGGCTCTATTTGC
TGGGATTTGTGCCCTCTGAGGAGCTGGCATGGGAGCTGAACGTGACGAGC
AGCACGACGGTCTACCCAGAAGAGCTCTCGCTCAAGGGTTGCACTCGTGC
CTTCATCTCCCTGCGGGAGGCGATGCTGAAGCGTGAGCGGATGGCAGTGG
TCCGGTATCAGGCGTCGGCAAAGTCAGAGCCTCGTCTAGCTGTGCTACTT
GCTTCATTGGCAACCAAGGGTTTAGAATTGGTTGAGTTGCCTTTCTTGGG
CGATCTGCGTTCTGTGGAGAGCCCGCATCTGGACTGTCCCCCGCCGCCGC
CGGAGAAAGAACAGCTGGAGGCAGCTAGGAAGGTGGTGGCGCGCTTGACT
TTAAAGCCACAGCAGTACTCTGTGGGCTTCAATAATCCGGCCTTGGAAAA
GTTTTACTCGGGTTTGCAGGCGTTGGCGCTGGAGGAGGCAAAGACGGAGT
GGAATGAGATAACGGATGACAGCACCTGGCCCTCGGACGAGTTGCTTGGC
CGAGCAGAAGAAGAGTTGGAGGAGCTGTGGGAACTGTCTCCTGATCCAAG
AAAGGGTGTGCAGAGGGGGAGGGGGAGGAAGCGGAAGGCAGATGCAGTGA
CGAAAACTGTTAAGGGTAAGCTGGTCGCTGAGAAGGTCAGCAAGGCTGAA
GACGAGGATGATGAGAAGATAGGAGGCGGTGGCGATAGATCGGTGAAGGA
CCTTTCGATGGGAAAGCTGGCCAAACTGACGGTTCCTCAACTGAAGGAGA
TCTGTCGTGCACGTGGGTTGCCCGTGTCAGGCAAGAAGGGAGACATCATC
GATCGTTTACAGATGGACCTCGAGACCGATGATGACTTGTGA
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Synonyms
Publications