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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr5 | genome | chr5:591199..594418 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G02220.1 vs.
Match: XP_002287467.1 (2-dehydro-3-deoxyphosphoheptonate aldolase-like protein [Thalassiosira pseudonana CCMP1335]; EED94910.1 2-dehydro-3-deoxyphosphoheptonate aldolase-like protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 721.8 bits (1862), Expect = 1.500e-204 Identity = 344/470 (73.19%), Postives = 396/470 (84.26%), Query Frame = 0
Query: 65 VQSMPPPTTTSTSSSAGKGSWSPESWRNYTPRQMPIYEDKAELEKVEQALAKSSPLVFAGECRQLHEHLAKAAMGQSFLLMGGDCAESFKEFHVDTVRDTFRVLLQMALVLTFGGSMPVIKVGRMAGQFAKPRSEPHEEVDGLRLPSYRGDIINSEAFTEEGRRNDPWRMLDAYHQSTQTLNILRAFATGGYADISRLHAWNLDFVEKSEEGSRYRKLASKVDESLRFMKAIGVNTESATFKQAQFYTAHECLLLSYEQALTRQDSTTGKWYDCSAHMLWIGERTRQLDGAHLEFTRGIGNPLGVKISDKITPDELLEVIDNLNPNNIPGRLSIIVRMGADKLREKLPALIRAVQKEGRFVVWISDPVHGNTIKAENGLKTRPFNKIRDELRAFFDVHDQMGTHPGGVHLEMTGKDVTECTGGTIQDIKVDDLNKRYHTHCDPRLNGVQALELAFLIAERMRSRTGLPPL 535
V S P STSS G G WSP SW+N +QMPIYED+AELE +AL + +PLVFAGE R LHE LA+ + GQ F+LMGGDCAESFKEFHV+ +RDTFRV++QMALV+TFG SMPV+K+GRMAGQFAKPRSEP+E +DG+ LPSYRGD +N E FT E RRNDP M+DAY+QS QTLNILRAF+TGG+ADISRLHAWNLDFVE +EEGSRYR LA+KVDESLRFMKAIG++T F FYTAHECLLL YEQALTRQDSTTGKWYDCS+HMLW+GERTR LDGAHLEFTRGIGNPLGVK+SDK TP+EL+ +I+ +NP N+PG+LSIIVRMGA+KLR+ LP LIRAVQ+EG+ VVWISDPVHGNT K E+G KTR F+ IR ELRAFFDVHD+MG+HPGGVH+EMTG+DVTECTGG + + + L RY+T CDPRLNG QALELAFLIAERMR RTGLPPL
Sbjct: 2 VSSAPKVANGSTSSGEG-GEWSPSSWKNAVAKQMPIYEDEAELEDAIKALDRVAPLVFAGEVRSLHEKLARVSQGQGFVLMGGDCAESFKEFHVNHIRDTFRVIMQMALVMTFGSSMPVVKIGRMAGQFAKPRSEPNEVIDGVSLPSYRGDNVNREEFTPEARRNDPHLMVDAYYQSAQTLNILRAFSTGGFADISRLHAWNLDFVENTEEGSRYRLLAAKVDESLRFMKAIGIDTSKPEFTSVDFYTAHECLLLPYEQALTRQDSTTGKWYDCSSHMLWVGERTRDLDGAHLEFTRGIGNPLGVKVSDKCTPEELIRIIETMNPQNVPGKLSIIVRMGAEKLRKNLPGLIRAVQREGKAVVWISDPVHGNTRKTESGFKTRDFDNIRAELRAFFDVHDEMGSHPGGVHIEMTGEDVTECTGG-VSSVTDETLKTRYNTACDPRLNGSQALELAFLIAERMRLRTGLPPL 469
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G02220.1 ID=NO05G02220.1|Name=NO05G02220.1|organism=Nannochloropsis oceanica|type=mRNA|length=2864bp
GCCATTTGGGGGCAGTGATTGCGCTTGTTTGCCCTGTGACGCCATTACCT
CCCGCTTACTGACGGTCCGGTCGAGGACAGGCATAAACATGTGCCCGAGC
CGCACAATCCTCGTGACCATTAAGCAGAAGAACTGAGCGCCTTATCCACG
AGGGTGCGATACTTTGGATCGGACTGCTCCGACCAGCGCCATTAAAAGCC
CCAGAGGGTACACTCCAAAGAAAAGAAGACATACCATACGCCATCGTCGC
TTTTTCCCTCGCCGGCGTCCTCCACCATTGGTCGGGAGGTGCGTTGAAGC
ATTTTACTTCACGTTGTGGGGTGGCCCACATGTCCGAGCTCTGGCACGAG
GAGGAAGCGCGGTAAAGACACCTGTGACCTCCCTCCCGCATCTCATCATC
ATAATACGGCCCTGGCCCAGTTGCCTTTCTGCTTGTCTTGACGGGGCGAT
AAGAAAGCAATGGGAGCGGCAACCATTGTATACTTTCCACGCTTGAAAGC
TACTCATTTAACATGATGGCATGGCAGTGGTGCAAGTGCTGGTCAGGCGC
TCACCGTCGTGCAAGCAACCCCCCTTCTTCAAGTGGCCGTATGGGGCGAG
GCGGCAAGTACCACCACCTCGCCCCAGCCCTCCTCCACTTGAATATCCGC
CTCACAAACTCACCCTGACAAATGTTATCACACCATCCCCACACAGTTAT
GGTGATTAACAAGGCATCTTCGTGGCTGTCGATTGCCACTTTGGGTGTCG
CAGCCCTGCTTGTGGCAGTGGACGAAGGTCAGGCCTTCGTGCAGCCTCCA
AGTCGCATGCCAAGCGGCACCTGCCCATTAATGGAGGCCCGGACGCGTGG
GTTGGTGCGAGCAGTACAGTCTATGCCCCCACCCACCACTACCAGTACGT
CCTCGTCTGCGGGAAAGGGTTCGTGGTCGCCTGAGTCCTGGCGCAACTAC
ACCCCCCGCCAGATGCCCATCTATGAGGATAAGGCGGAGCTTGAAAAGGT
GGAGCAGGCGCTGGCCAAATCTTCACCCTTGGTCTTTGCGGGCGAATGCC
GGCAACTTCACGAGCACCTTGCCAAGGCCGCTATGGGGCAAAGCTTCTTG
CTGATGGGGGGGGATTGCGCCGAGAGCTTTAAGGAGTTTCACGTGGATAC
GGTTCGTGACACATTCCGTGTGTTGCTGCAGATGGCCCTGGTCCTGACCT
TTGGTGGCTCCATGCCCGTAATTAAGGTGGGCCGCATGGCTGGCCAGTTT
GCCAAGCCGCGTTCAGAGCCCCACGAGGAGGTTGACGGCCTGCGCCTGCC
CTCCTACCGAGGCGACATCATCAACAGTGAGGCCTTTACAGAGGAGGGGC
GTCGCAACGACCCTTGGCGCATGCTGGACGCCTACCACCAGTCTACACAG
ACGTTGAACATCCTCCGGGCCTTTGCCACAGGTGGGTACGCCGACATTTC
CCGTCTGCACGCCTGGAACCTGGATTTTGTCGAGAAGTCAGAGGAAGGTA
GCCGCTACCGCAAGCTCGCCTCCAAGGTGGATGAGTCTCTGCGATTCATG
AAGGCCATCGGCGTCAACACCGAATCGGCCACCTTCAAGCAAGCTCAGTT
CTACACCGCCCACGAGTGTCTTCTCCTCTCCTACGAGCAGGCCCTGACCC
GCCAAGACTCGACCACTGGAAAGTGGTACGACTGCTCCGCCCACATGCTT
TGGATCGGCGAGCGAACTCGGCAGCTCGATGGGGCGCATCTGGAGTTCAC
CCGCGGCATCGGCAACCCTTTGGGTGTCAAGATCTCGGACAAGATCACAC
CCGATGAGTTACTGGAAGTGATTGACAATTTGAACCCCAACAACATTCCT
GGGCGTCTCTCCATCATCGTCCGCATGGGTGCTGACAAGCTCCGAGAAAA
GCTGCCGGCACTCATTCGGGCCGTCCAGAAAGAAGGCCGCTTTGTGGTCT
GGATCTCGGACCCCGTACATGGTAACACGATCAAGGCGGAGAATGGGCTG
AAGACCCGGCCGTTCAACAAGATCCGCGACGAGCTTCGCGCGTTTTTTGA
CGTGCACGACCAGATGGGCACGCACCCCGGGGGGGTCCATCTGGAGATGA
CGGGCAAGGATGTGACGGAGTGCACGGGCGGTACCATCCAGGACATAAAG
GTGGACGACTTGAACAAGCGTTACCACACGCACTGCGATCCCCGCCTTAA
TGGTGTGCAAGCCCTGGAGCTGGCTTTCTTGATCGCCGAGCGGATGCGCT
CACGGACTGGCCTTCCTCCTCTCTTTAATGATGCCTAGGTAGAGTGTGTA
GTGTCATGCACCTACCCGCAATTAGGAGCCATCATGGCATGCGTGCGAGA
TAATTTTGAAAGGAATGGAGAAGGAAGATTCCACGATTTTTGTTTTGTTG
CTCGATAAAAAGGCTGTTACGACCACAACTAGCAGTGATGCCTTTTGTGT
CCGAGAATCAGATGAGAAGAAAGAGAATGATAGAAGATGAAGGAGAATAT
GGAGGTACAGAAAAATAAGGATATGAAGAAGAAGAAGAAGAAGTACACGT
AGTCCGTTCACGCAGTCCGTTCTCCTTGATCTGTGTTTTATTAGGTAGTA
AGGGATATAAGTGAGAGACAGACAAAGACAGATAGAAAATGAGAGAGAAA
GAACTTAAAACACATACACCCCCCCACCATACATCTATCAGTATTCGCAC
TTTTAATATGTTGGATTCTCAAACTTGACATGCCGGATCCTGCGGCGTGC
TGAAATTCACTTTACATAACATCGTCGCCCTTCCCTTCCGTTTCGTTTCA
CGGAGAGGCGACGACACAGGGAGGGGTCGAGTGGATGAAACCACCAGCCA
CAAAGGAAACAAAC back to topprotein sequence of NO05G02220.1 >NO05G02220.1-protein ID=NO05G02220.1-protein|Name=NO05G02220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=539bp
MLSHHPHTVMVINKASSWLSIATLGVAALLVAVDEGQAFVQPPSRMPSGT
CPLMEARTRGLVRAVQSMPPPTTTSTSSSAGKGSWSPESWRNYTPRQMPI
YEDKAELEKVEQALAKSSPLVFAGECRQLHEHLAKAAMGQSFLLMGGDCA
ESFKEFHVDTVRDTFRVLLQMALVLTFGGSMPVIKVGRMAGQFAKPRSEP
HEEVDGLRLPSYRGDIINSEAFTEEGRRNDPWRMLDAYHQSTQTLNILRA
FATGGYADISRLHAWNLDFVEKSEEGSRYRKLASKVDESLRFMKAIGVNT
ESATFKQAQFYTAHECLLLSYEQALTRQDSTTGKWYDCSAHMLWIGERTR
QLDGAHLEFTRGIGNPLGVKISDKITPDELLEVIDNLNPNNIPGRLSIIV
RMGADKLREKLPALIRAVQKEGRFVVWISDPVHGNTIKAENGLKTRPFNK
IRDELRAFFDVHDQMGTHPGGVHLEMTGKDVTECTGGTIQDIKVDDLNKR
YHTHCDPRLNGVQALELAFLIAERMRSRTGLPPLFNDA* back to topmRNA from alignment at chr5:591199..594418- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G02220.1 ID=NO05G02220.1|Name=NO05G02220.1|organism=Nannochloropsis oceanica|type=mRNA|length=3220bp|location=Sequence derived from alignment at chr5:591199..594418- (Nannochloropsis oceanica)
GCCATTTGGGGGCAGTGATTGCGCTTGTTTGCCCTGTGACGCCATTACCT
CCCGCTTACTGACGGTCCGGTCGAGGACAGGCATAAACATGTGCCCGAGC
CGCACAATCCTCGTGACCATTAAGCAGAAGAACTGAGCGCCTTATCCACG
AGGGTGCGATACTTTGGATCGGACTGCTCCGACCAGCGCCATTAAAAGCC
CCAGAGGGTACACTCCAAAGAAAAGAAGACATACCATACGCCATCGTCGC
TTTTTCCCTCGCCGGCGTCCTCCACCATTGGTCGGGAGGTGCGTTGAAGC
ATTTTACTTCACGTTGTGGGGTGGCCCACATGTCCGAGCTCTGGCACGAG
GAGGAAGCGCGGTAAAGACACCTGTGACCTCCCTCCCGCATCTCATCATC
ATAATACGGCCCTGGCCCAGTTGCCTTTCTGCTTGTCTTGACGGGGCGAT
AAGAAAGCAATGGGAGCGGCAACCATTGTATACTTTCCACGCTTGAAAGC
TACTCATTTAACATGATGGCATGGCAGTGGTGCAAGTGCTGGTCAGGCGC
TCACCGTCGTGCAAGCAACCCCCCTTCTTCAAGTGGCCGTATGGGGCGAG
GCGGCAAGTACCACCACCTCGCCCCAGCCCTCCTCCACTTGAATATCCGC
CTCACAAACTCACCCTGACAAATGTTATCACACCATCCCCACACAGTTAT
GGTGATTAACAAGGCATCTTCGTGGCTGTCGATTGCCACTTTGGGTGTCG
CAGCCCTGCTTGTGGCAGTGGACGAAGGTCAGGCCTTCGTGCAGCCTCCA
AGTCGCATGCCAAGCGGCACCTGCCCATTAATGGAGGCCCGGACGCGTGG
GTTGGTGCGAGCAGTACAGTCTATGCCCCCACCCACCACTACCAGTACGT
CCTCGTCTGCGGGAAAGGGTTCGTGGTCGCCTGAGTCCTGGCGCAACTAC
ACCCCCCGCCAGATGCCCATCTATGAGGATAAGGTAAGTAACGCAAGTGG
GCGGAGCAGGAGTAGAAGGGGGTGACGATGGGGCACACATGGATTAGGTT
ACAAACATTTTCATACATCGGCCAACACCTCTCTCTTCAACAGGCGGAGC
TTGAAAAGGTGGAGCAGGCGCTGGCCAAATCTTCACCCTTGGTCTTTGCG
GGCGAATGCCGGCAACTTCACGAGCACCTTGGTAAGAGTCGGAGGGGGAA
GGCTGAGGCGAATGGTCAAGTGATCGAGGGATTGATTTCAAATTCTGACT
GGAGCTGTGTTTTCATGGTATTAGCACCCTGCTGACCTTTTCCTTTTAAA
TTCCACTCGCACACAGCCAAGGCCGCTATGGGGCAAAGCTTCTTGCTGAT
GGGGGGGGATTGCGCCGAGAGCTTTAAGGAGTTTCACGTGGATACGGTTC
GTGACACATTCCGTGTGTTGCTGCAGATGGCCCTGGTCCTGACCTTTGGT
GGCTCCATGCCCGTAATTAAGGTGGGCCGCATGGCTGGCCAGTTTGCCAA
GTAAGTAAGACAGGGATAGGAGATAGATGGATGAACTCTTACCTTTGCTC
TGCGGTTTCATGTGACCCTCTTTTGTTTCTTATTTGCCGCCTCATACCAT
GTCATGATCAGGCCGCGTTCAGAGCCCCACGAGGAGGTTGACGGCCTGCG
CCTGCCCTCCTACCGAGGCGACATCATCAACAGTGAGGCCTTTACAGAGG
AGGGGCGTCGCAACGACCCTTGGCGCATGCTGGACGCCTACCACCAGTCT
ACACAGACGTTGAACATCCTCCGGGCCTTTGCCACAGGTGGGTACGCCGA
CATTTCCCGTCTGCACGCCTGGAACCTGGATTTTGTCGAGAAGTCAGAGG
AAGGTAGCCGCTACCGCAAGCTCGCCTCCAAGGTGGATGAGTCTCTGCGA
TTCATGAAGGCCATCGGCGTCAACACCGAATCGGCCACCTTCAAGCAAGC
TCAGTTCTACACCGCCCACGAGTGTCTTCTCCTCTCCTACGAGCAGGCCC
TGACCCGCCAAGACTCGACCACTGGAAAGTGGTACGACTGCTCCGCCCAC
ATGCTTTGGATCGGCGAGCGAACTCGGCAGCTCGATGGGGCGCATCTGGA
GTTCACCCGCGGCATCGGCAACCCTTTGGGTGTCAAGATCTCGGACAAGA
TCACACCCGATGAGTTACTGGAAGTGATTGACAATTTGAACCCCAACAAC
ATTCCTGGGCGTCTCTCCATCATCGTCCGCATGGGTGCTGACAAGCTCCG
AGAAAAGCTGCCGGCACTCATTCGGGCCGTCCAGAAAGAAGGCCGCTTTG
TGGTCTGGATCTCGGACCCCGTACATGGTAACACGATCAAGGCGGAGAAT
GGGCTGAAGACCCGGCCGTTCAACAAGATCCGCGACGAGCTTCGCGCGTT
TTTTGACGTGCACGACCAGATGGGCACGCACCCCGGGGGGGTCCATCTGG
AGATGACGGGCAAGGATGTGACGGAGTGCACGGGCGGTACCATCCAGGAC
ATAAAGGTGGACGACTTGAACAAGCGTTACCACACGCACTGCGATCCCCG
CCTTAATGGTGTGCAAGCCCTGGAGCTGGCTTTCTTGATCGCCGAGCGGA
TGCGCTCACGGACTGGCCTTCCTCCTCTCTTTAATGATGCCTAGGTAGAG
TGTGTAGTGTCATGCACCTACCCGCAATTAGGAGCCATCATGGCATGCGT
GCGAGATAATTTTGAAAGGAATGGAGAAGGAAGATTCCACGATTTTTGTT
TTGTTGCTCGATAAAAAGGCTGTTACGACCACAACTAGCAGTGATGCCTT
TTGTGTCCGAGAATCAGATGAGAAGAAAGAGAATGATAGAAGATGAAGGA
GAATATGGAGGTACAGAAAAATAAGGATATGAAGAAGAAGAAGAAGAAGT
ACACGTAGTCCGTTCACGCAGTCCGTTCTCCTTGATCTGTGTTTTATTAG
GTAGTAAGGGATATAAGTGAGAGACAGACAAAGACAGATAGAAAATGAGA
GAGAAAGAACTTAAAACACATACACCCCCCCACCATACATCTATCAGTAT
TCGCACTTTTAATATGTTGGATTCTCAAACTTGACATGCCGGATCCTGCG
GCGTGCTGAAATTCACTTTACATAACATCGTCGCCCTTCCCTTCCGTTTC
GTTTCACGGAGAGGCGACGACACAGGGAGGGGTCGAGTGGATGAAACCAC
CAGCCACAAAGGAAACAAAC back to topCoding sequence (CDS) from alignment at chr5:591199..594418- >NO05G02220.1 ID=NO05G02220.1|Name=NO05G02220.1|organism=Nannochloropsis oceanica|type=CDS|length=1617bp|location=Sequence derived from alignment at chr5:591199..594418- (Nannochloropsis oceanica)
ATGTTATCACACCATCCCCACACAGTTATGGTGATTAACAAGGCATCTTC
GTGGCTGTCGATTGCCACTTTGGGTGTCGCAGCCCTGCTTGTGGCAGTGG
ACGAAGGTCAGGCCTTCGTGCAGCCTCCAAGTCGCATGCCAAGCGGCACC
TGCCCATTAATGGAGGCCCGGACGCGTGGGTTGGTGCGAGCAGTACAGTC
TATGCCCCCACCCACCACTACCAGTACGTCCTCGTCTGCGGGAAAGGGTT
CGTGGTCGCCTGAGTCCTGGCGCAACTACACCCCCCGCCAGATGCCCATC
TATGAGGATAAGGCGGAGCTTGAAAAGGTGGAGCAGGCGCTGGCCAAATC
TTCACCCTTGGTCTTTGCGGGCGAATGCCGGCAACTTCACGAGCACCTTG
CCAAGGCCGCTATGGGGCAAAGCTTCTTGCTGATGGGGGGGGATTGCGCC
GAGAGCTTTAAGGAGTTTCACGTGGATACGGTTCGTGACACATTCCGTGT
GTTGCTGCAGATGGCCCTGGTCCTGACCTTTGGTGGCTCCATGCCCGTAA
TTAAGGTGGGCCGCATGGCTGGCCAGTTTGCCAAGCCGCGTTCAGAGCCC
CACGAGGAGGTTGACGGCCTGCGCCTGCCCTCCTACCGAGGCGACATCAT
CAACAGTGAGGCCTTTACAGAGGAGGGGCGTCGCAACGACCCTTGGCGCA
TGCTGGACGCCTACCACCAGTCTACACAGACGTTGAACATCCTCCGGGCC
TTTGCCACAGGTGGGTACGCCGACATTTCCCGTCTGCACGCCTGGAACCT
GGATTTTGTCGAGAAGTCAGAGGAAGGTAGCCGCTACCGCAAGCTCGCCT
CCAAGGTGGATGAGTCTCTGCGATTCATGAAGGCCATCGGCGTCAACACC
GAATCGGCCACCTTCAAGCAAGCTCAGTTCTACACCGCCCACGAGTGTCT
TCTCCTCTCCTACGAGCAGGCCCTGACCCGCCAAGACTCGACCACTGGAA
AGTGGTACGACTGCTCCGCCCACATGCTTTGGATCGGCGAGCGAACTCGG
CAGCTCGATGGGGCGCATCTGGAGTTCACCCGCGGCATCGGCAACCCTTT
GGGTGTCAAGATCTCGGACAAGATCACACCCGATGAGTTACTGGAAGTGA
TTGACAATTTGAACCCCAACAACATTCCTGGGCGTCTCTCCATCATCGTC
CGCATGGGTGCTGACAAGCTCCGAGAAAAGCTGCCGGCACTCATTCGGGC
CGTCCAGAAAGAAGGCCGCTTTGTGGTCTGGATCTCGGACCCCGTACATG
GTAACACGATCAAGGCGGAGAATGGGCTGAAGACCCGGCCGTTCAACAAG
ATCCGCGACGAGCTTCGCGCGTTTTTTGACGTGCACGACCAGATGGGCAC
GCACCCCGGGGGGGTCCATCTGGAGATGACGGGCAAGGATGTGACGGAGT
GCACGGGCGGTACCATCCAGGACATAAAGGTGGACGACTTGAACAAGCGT
TACCACACGCACTGCGATCCCCGCCTTAATGGTGTGCAAGCCCTGGAGCT
GGCTTTCTTGATCGCCGAGCGGATGCGCTCACGGACTGGCCTTCCTCCTC
TCTTTAATGATGCCTAG back to top
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