NO05G02130.1, NO05G02130.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G02130.1
Unique NameNO05G02130.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2147
Alignment locationchr5:572003..574342 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:572003..574342 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G02130.1 vs.
Match: EWM28195.1 (ferredoxin [Nannochloropsis gaditana])

HSP 1 Score: 239.2 bits (609), Expect = 8.800e-60
Identity = 122/161 (75.78%), Postives = 137/161 (85.09%), Query Frame = 0 
Query:    1 MTTMLRLSVLLVLLSMVASFLVPAPLPAMTSVPQQTRRGKMMMLGMFGKKSAGG--KTFTVTVQQKFYKDAELEVDAGAPVNLRKELMKNKIDIYPLQGKIYNCGGGGQCGTCAVQIISGAKNLNPKSPVEVKALGGKRGDDIRLSCCTRASGDVVIKTKP 160
            M  +LR ++ +V+++   +F VP  L   T+  Q  R G M MLGMFGKKSAGG  KTFTVTVQQKFYK+AELEV+AGAPVNLRKELMKNKIDIYPLQGKIYNCGGGGQCGTCA+QII GAKNLNPKSPVEVKALGGK+GDDIRL+CCTRASGDV +KTKP
Sbjct:    1 MRGILRFAITMVMITTTVAFFVPVLL---TTHKQSRRVGVMTMLGMFGKKSAGGNKKTFTVTVQQKFYKNAELEVEAGAPVNLRKELMKNKIDIYPLQGKIYNCGGGGQCGTCAIQIIKGAKNLNPKSPVEVKALGGKKGDDIRLACCTRASGDVTVKTKP 158
The following BLAST results are available for this feature:
BLAST of NO05G02130.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28195.18.800e-6075.78ferredoxin [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G02130NO05G02130Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G02130.1NO05G02130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G02130.1.cds1NO05G02130.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02130.1.cds2NO05G02130.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G02130.1 ID=NO05G02130.1|Name=NO05G02130.1|organism=Nannochloropsis oceanica|type=mRNA|length=2147bp
TCATGCGCGGCCAGCATCTGAGCTTCCTGCAAGGGACTGACCCTCCCGAG
GGGGTATAATACTATCACCCTCATGTTCTCTTTGCCCTTAACTGCCGCTG
CTGCTGAAGGCCCCGTGTCTCCTGATGTGCCAACTAGAAAGGTCATTTTT
TGGTGTTGCTTGGAGAGGTAGAAGTTGAGGACATGAGCTAAGACTTGCAT
GCCTAAGTCTTTGAATGCCAAGGAGGGCCCGTGGAACAATTCGGCGATAT
AGAGGGAGGGAGCAGAGGAGGGGGAGGAGGAGCAGGAGGAGGAGGAGGAA
GAGGAGGAAGAGGAGGAGGAGGAGGACGACGACGAGGACGAAGGCCACGG
CAAGGCCTTGAATGTCACCACCTCGGGCGTAGCAAAGGAGGCAAAGCTGG
CGTCCACAATCTCTTCCAATGGCACTTCCTCTTCGGTCTTCCCGTCGTCC
TCGTCCCCGTCGTCCGTCACAAACAAAGCCAAGAGCCTGGTGACTAATTG
GGGATATGAGAGGCCTCTCCATTCTTCCAGCATCGCAGGCGTCACCTGCG
GGATGCGCTCTGGTAGGAGCATGCCTCCATCCGGAGCCCATCCTGCTAGC
ACGGCTTCACGAAATGTGAGGCGCGACGAAGAGGAGGAAGATTCTCCTCG
GGTGCTAATGTACCGCATAGGGCGTTGCGTCGTGACTATCAATACTCCTG
TGGTATGGCTGAAGGGGGGAGAGGGAGGGAGGAGGAGAGTAAGGTGTATT
GAGCAAAGAGCCAGGCAGGTGATAAATAGCCGGGTAAGTACAAAGGGGTG
GGTACATGTGCCTGCGTTGGCCCCTCAGAACGCGAGACGAACGAACGAAC
GAGAGGAGCGGAGAGACTTCGCCTCTTCTCGTGTCAAGTCACGACAAACA
CCACACACGCAAGTTTGCAACAAGGCGATGTGGATCTGTGAGTGGGTGTA
CGCACTACGTTGACGTGAGGTGGCAGTCCTCGAGGCATAAAAATGACAAG
GAACGAGATCTACTTCGCCCCAAAACCGGCATGGACAGAGTATCAATTTT
CGTTGCCGCCAAGTAATGCTCTACTCTGTCTCATCTTGTGACCTTGGCTC
GCTTTGAATTCTTCCCCTCTCGTTCTTGATTTCGATTGTCCTATCTAATT
CCTCTCTTATTACACTCACCACGAACACACACCACACAGGCAGATCTTTC
CTCTCCCTGCACATCATGACTACCATGCTTCGCCTGTCCGTTCTCCTGGT
CCTGCTTTCCATGGTAGCCTCCTTCCTAGTCCCCGCTCCCTTGCCGGCCA
TGACCTCTGTGCCACAGCAAACTCGGCGAGGGAAGATGATGATGCTGGGC
ATGTTTGGGAAGAAGTCGGCCGGAGGAAAGACATTTACGGTGACGGTGCA
ACAGAAGTTTTACAAGGACGCGGAGCTGGAAGTAGATGCGGGCGCACCAG
TGAACCTGCGCAAGGAGCTCATGAAGAATAAGATTGACATCTACCCGTTG
CAAGGCAAGATCTACAACTGCGGCGGAGGGGGCCAGTGCGGTACCTGTGC
CGTGCAGATTATCAGTGGTGCCAAGAATCTTAACCCCAAGTCGCCCGTGG
AGGTCAAGGCGCTAGGCGGGAAGAGGGGAGACGACATTCGATTGTCATGC
TGCACACGGGCCTCGGGGGACGTGGTGATTAAGACGAAGCCTTGACTGAT
TGACTGACTAGCTTTTCAATGACTAAGAAGATATGACCGGGAAGGCACCA
ACGATGATGACTTTGCAGGAGGTTGGGGTCCACAAGAGCAATACCCAAAA
CGATGTGAGGAATGATGATAAAGAAGGAATCACGTACTGCCGAAGGAGAC
GGAGGAGGGGGGAAAGAAGAGATCGGAAAGGAGAGAAAAGAAGTAGAGAT
CATATACTGATCTGTATTGTGTCACTTCCTTTTTGTAGAATGGGCGGAAA
GGCTTATGTGTGTGAGAGTGAGTGTGCGTTGAGCGTGTGTGCGTGTGCCC
CGGTGCCCCGACTGATCTTTTGTTCAAGTGAAAAGCTGGTCTTCAAAGCA
CGCGTGTATCTCTTTTTCCTAGACCAGTGCGAAGCAAGCTATCAAAAAAG
TGGAAAAGAATAATGACGAAAAAGAAAGGGGGGGAAACTAGGATGAA
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protein sequence of NO05G02130.1

>NO05G02130.1-protein ID=NO05G02130.1-protein|Name=NO05G02130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=160bp
MTTMLRLSVLLVLLSMVASFLVPAPLPAMTSVPQQTRRGKMMMLGMFGKK
SAGGKTFTVTVQQKFYKDAELEVDAGAPVNLRKELMKNKIDIYPLQGKIY
NCGGGGQCGTCAVQIISGAKNLNPKSPVEVKALGGKRGDDIRLSCCTRAS
GDVVIKTKP*
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mRNA from alignment at chr5:572003..574342+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G02130.1 ID=NO05G02130.1|Name=NO05G02130.1|organism=Nannochloropsis oceanica|type=mRNA|length=2340bp|location=Sequence derived from alignment at chr5:572003..574342+ (Nannochloropsis oceanica)
TCATGCGCGGCCAGCATCTGAGCTTCCTGCAAGGGACTGACCCTCCCGAG
GGGGTATAATACTATCACCCTCATGTTCTCTTTGCCCTTAACTGCCGCTG
CTGCTGAAGGCCCCGTGTCTCCTGATGTGCCAACTAGAAAGGTCATTTTT
TGGTGTTGCTTGGAGAGGTAGAAGTTGAGGACATGAGCTAAGACTTGCAT
GCCTAAGTCTTTGAATGCCAAGGAGGGCCCGTGGAACAATTCGGCGATAT
AGAGGGAGGGAGCAGAGGAGGGGGAGGAGGAGCAGGAGGAGGAGGAGGAA
GAGGAGGAAGAGGAGGAGGAGGAGGACGACGACGAGGACGAAGGCCACGG
CAAGGCCTTGAATGTCACCACCTCGGGCGTAGCAAAGGAGGCAAAGCTGG
CGTCCACAATCTCTTCCAATGGCACTTCCTCTTCGGTCTTCCCGTCGTCC
TCGTCCCCGTCGTCCGTCACAAACAAAGCCAAGAGCCTGGTGACTAATTG
GGGATATGAGAGGCCTCTCCATTCTTCCAGCATCGCAGGCGTCACCTGCG
GGATGCGCTCTGGTAGGAGCATGCCTCCATCCGGAGCCCATCCTGCTAGC
ACGGCTTCACGAAATGTGAGGCGCGACGAAGAGGAGGAAGATTCTCCTCG
GGTGCTAATGTACCGCATAGGGCGTTGCGTCGTGACTATCAATACTCCTG
TGGTATGGCTGAAGGGGGGAGAGGGAGGGAGGAGGAGAGTAAGGTGTATT
GAGCAAAGAGCCAGGCAGGTGATAAATAGCCGGGTAAGTACAAAGGGGTG
GGTACATGTGCCTGCGTTGGCCCCTCAGAACGCGAGACGAACGAACGAAC
GAGAGGAGCGGAGAGACTTCGCCTCTTCTCGTGTCAAGTCACGACAAACA
CCACACACGCAAGTTTGCAACAAGGCGATGTGGATCTGTGAGTGGGTGTA
CGCACTACGTTGACGTGAGGTGGCAGTCCTCGAGGCATAAAAATGACAAG
GAACGAGATCTACTTCGCCCCAAAACCGGCATGGACAGAGTATCAATTTT
CGTTGCCGCCAAGTAATGCTCTACTCTGTCTCATCTTGTGACCTTGGCTC
GCTTTGAATTCTTCCCCTCTCGTTCTTGATTTCGATTGTCCTATCTAATT
CCTCTCTTATTACACTCACCACGAACACACACCACACAGGCAGATCTTTC
CTCTCCCTGCACATCATGACTACCATGCTTCGCCTGTCCGTTCTCCTGGT
CCTGCTTTCCATGGTAGCCTCCTTCCTAGTCCCCGCTCCCTTGCCGGCCA
TGACCTCTGTGCCACAGCAAACTCGGCGAGGGAAGATGATGATGCTGGGC
ATGTTTGGGAAGAAGTCGGCCGGAGGAAAGACATTTACGGTGACGGTGCA
ACAGAAGTTTTACAAGGACGCGGAGCTGGAAGTAGATGCGGGCGCACCAG
TGAACCTGCGCAAGGAGCTCATGAAGAATAAGATTGACATCTACCCGTTG
CAAGGCAAGATCTACAACTGCGGCGGAGGGGGCCAGTGCGGTACCTGTGC
CGTGCAGATTATCAGTGGTGCCAAGAATCTTAAGTAAGTCTTGAGTAGTG
AAGATGGTAGGGGCGGGTCTGGAATGCTCTTCCCGTGCAAGAAGGTTTTT
GTTCAATCATTTACTCCCCGATCTCTTTCCTTTGTTTGAGCATATTCAAT
ATATTCAATTCTTCTCGCATTTGCCTTACGACTCATTTCGTTTCTTTCTA
AATGTTAAATTTCATGCAAAAACTAGCCCCAAGTCGCCCGTGGAGGTCAA
GGCGCTAGGCGGGAAGAGGGGAGACGACATTCGATTGTCATGCTGCACAC
GGGCCTCGGGGGACGTGGTGATTAAGACGAAGCCTTGACTGATTGACTGA
CTAGCTTTTCAATGACTAAGAAGATATGACCGGGAAGGCACCAACGATGA
TGACTTTGCAGGAGGTTGGGGTCCACAAGAGCAATACCCAAAACGATGTG
AGGAATGATGATAAAGAAGGAATCACGTACTGCCGAAGGAGACGGAGGAG
GGGGGAAAGAAGAGATCGGAAAGGAGAGAAAAGAAGTAGAGATCATATAC
TGATCTGTATTGTGTCACTTCCTTTTTGTAGAATGGGCGGAAAGGCTTAT
GTGTGTGAGAGTGAGTGTGCGTTGAGCGTGTGTGCGTGTGCCCCGGTGCC
CCGACTGATCTTTTGTTCAAGTGAAAAGCTGGTCTTCAAAGCACGCGTGT
ATCTCTTTTTCCTAGACCAGTGCGAAGCAAGCTATCAAAAAAGTGGAAAA
GAATAATGACGAAAAAGAAAGGGGGGGAAACTAGGATGAA
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Coding sequence (CDS) from alignment at chr5:572003..574342+

>NO05G02130.1 ID=NO05G02130.1|Name=NO05G02130.1|organism=Nannochloropsis oceanica|type=CDS|length=480bp|location=Sequence derived from alignment at chr5:572003..574342+ (Nannochloropsis oceanica)
ATGACTACCATGCTTCGCCTGTCCGTTCTCCTGGTCCTGCTTTCCATGGT
AGCCTCCTTCCTAGTCCCCGCTCCCTTGCCGGCCATGACCTCTGTGCCAC
AGCAAACTCGGCGAGGGAAGATGATGATGCTGGGCATGTTTGGGAAGAAG
TCGGCCGGAGGAAAGACATTTACGGTGACGGTGCAACAGAAGTTTTACAA
GGACGCGGAGCTGGAAGTAGATGCGGGCGCACCAGTGAACCTGCGCAAGG
AGCTCATGAAGAATAAGATTGACATCTACCCGTTGCAAGGCAAGATCTAC
AACTGCGGCGGAGGGGGCCAGTGCGGTACCTGTGCCGTGCAGATTATCAG
TGGTGCCAAGAATCTTAACCCCAAGTCGCCCGTGGAGGTCAAGGCGCTAG
GCGGGAAGAGGGGAGACGACATTCGATTGTCATGCTGCACACGGGCCTCG
GGGGACGTGGTGATTAAGACGAAGCCTTGA
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Synonyms
Publications