NO05G02070.1, NO05G02070.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G02070.1
Unique NameNO05G02070.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2225
Alignment locationchr5:559078..561433 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:559078..561433 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G02070.1 vs.
Match: EWM28243.1 (cytochrome b6-f complex iron-sulfur subunit [Nannochloropsis gaditana])

HSP 1 Score: 362.5 bits (929), Expect = 9.600e-97
Identity = 173/221 (78.28%), Postives = 191/221 (86.43%), Query Frame = 0 
Query:    1 MKTAVVLATLFCGAQGFLAPSLPTTDVVARSNSGRLTTKMAEVAGEEPFVPDMDRRKLMNNILLGSVGLSIAGLAVPYLSFFVPRTGGGSAGGALAATDALGRNVTFPGWLATHQAGDRSLVHGLSGDPTYLIVKEDKTIEKYAVNAICTHLGCIVPWNKAQNKFMCPCHGSQYDKTGKVVRGPAPLSLALAHVNEEDKKVVVLTPWTETDFRTNEDPWWK 222
            MKTA VLAT FCG  GFL P +P+   VAR+NSGR+ TKMAE  GEEPFVPDMDRRKLMN ILLGSVGL++AGLAVPY++FFVPRTGGG AGG LAA DALG +VT  GWL+THQAGDRSLV GL GD TYLIVKEDKTIE Y +NA+CTHLGC+VPWNKA++KF+CPCHGSQYDKTGKVVRGPAPLSLALAHV E D K V+LTPWTETDFRT+  PWWK
Sbjct:   20 MKTAFVLATFFCGVHGFLVPGIPSAS-VARTNSGRIVTKMAEAVGEEPFVPDMDRRKLMNTILLGSVGLNVAGLAVPYIAFFVPRTGGG-AGGGLAAKDALGDDVTVQGWLSTHQAGDRSLVQGLKGDATYLIVKEDKTIENYGLNAVCTHLGCVVPWNKAESKFICPCHGSQYDKTGKVVRGPAPLSLALAHVKESDGK-VLLTPWTETDFRTDTAPWWK 237
The following BLAST results are available for this feature:
BLAST of NO05G02070.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28243.19.600e-9778.28cytochrome b6-f complex iron-sulfur subunit [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G02070NO05G02070Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G02070.1NO05G02070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G02070.1.cds1NO05G02070.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02070.1.cds2NO05G02070.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G02070.1 ID=NO05G02070.1|Name=NO05G02070.1|organism=Nannochloropsis oceanica|type=mRNA|length=2225bp
CCTCGCTATCCCCAACAACTCACACACCGTGGACAGGATCATGATAAAAC
GCACGCCGCTGGCAAGCCTTTCCTCGGAGGAGACAACACATAGAGACTAT
CGGGAAAAGTTGGGGCCTCACCCGTGGTTACCAAGTGTCGTCTCTAGCCG
CGCTCTTTCTACGGCGTCCGAGGTTTCTTGCCGCCTACTATATTTACGGA
AGATGTGCACACGGACTCATGACGTATCGTATTGTTACGGCATTTGGCTA
TGTTGGGCTTTGCCAATCATGACCTAACATGATCACCCCCACGGCCAGCC
ATTCCTTCCGACCCGGGGGATCTCACTCCTCACGTATTTGGACCACGTTG
TCAGATCTCTGGTCACCGCGAAAGAGAACTGAGAAAGAGGGCGAGGAGAG
GCATGGCCTTGCGCCCCGGTACCCAACGACAGCACTACCGGACAACGCCT
GAAGCATTGCAAACGTACTCAATGGCAGTGCCGGCAGGATCACATGTACA
AGCTCTCAGGGTCTTGCAGGGCTGCATGCTCCCTGTAGTGCAATGCTACT
GCCACTGCATCACCATACTCACACGTATCCACGTTTTATCCCAAGCTTAC
TTGGTGTGCTCATCATTTTCCCCATCTACCGACCCCATCTAGACACAGGT
GTGTTTACTCGAATCGACTTTAATTCCGTCCAATCATGAAGACTGCCGTC
GTATTGGCCACCCTCTTTTGCGGCGCTCAAGGCTTCTTGGCGCCCAGCTT
GCCCACGACGGATGTTGTTGCCCGCAGCAACAGCGGGCGATTGACCACCA
AGATGGCTGAGGTGGCGGGCGAGGAGCCTTTTGTCCCCGACATGGACCGC
CGCAAGCTCATGAATAACATTTTGTTGGGCTCCGTGGGCTTGAGCATTGC
CGGTCTGGCCGTCCCTTACCTCTCCTTCTTCGTGCCTCGCACGGGCGGAG
GTAGCGCTGGGGGAGCATTAGCCGCCACGGATGCACTAGGCCGTAATGTG
ACGTTTCCGGGCTGGTTGGCCACCCATCAGGCGGGCGATCGCTCCTTAGT
ACACGGCCTCAGCGGCGATCCCACGTACCTGATCGTGAAGGAGGACAAGA
CCATTGAGAAATATGCCGTGAATGCGATCTGCACGCATTTGGGGTGCATC
GTGCCCTGGAACAAGGCTCAGAACAAATTCATGTGCCCGTGCCACGGCTC
GCAGTACGACAAGACCGGCAAGGTCGTGCGTGGCCCCGCCCCGCTCTCCC
TGGCCCTCGCCCACGTCAACGAGGAGGATAAGAAGGTTGTCGTGCTGACG
CCCTGGACAGAAACGGATTTCCGAACAAACGAGGACCCCTGGTGGAAGTA
AATCCTCTGGTGGGTCATGTAAAGTAGATTCGTATAGGAAAAGAGAAGGA
AAGCGAGATGCGGGCACGCAATTGATAGGCAGAGAGGATAACTCCCATTT
CAATCTTTGAAAACGGCCTCCTCTGTAAAGCACCGGGGGAGGAGTTTGAT
GGGTAGAAAGGAGAGTAGTGGAACCAACCAAAAATGTGTGGATATGCGTG
CATGACTTTGTTTCTTTCTCTTTTGTCCGTGCAGTGCCGAATGAAAGTGA
GGGTGGTCTGCGTCTTGGGACTCCTTTTGATTAAACCTTGTGATATTGCA
TGCACGCTAGCACGGTGAGGGCGAAGGAAGAGGTTGCCTCGCTCCTCGAG
ACTTATCATGAATTTAAATAATTTAAAATTGGGCCTTACACAATCTAAAA
GCTGCGAAAATGATGATTTTGGTTTGTATTAAGCGTTTTGCTCTATTCCG
AGCCTGAGAAGTTGAAGAAAGCGCCGGCAATGTTCTTCGTTACCCGCGAC
TGCTCTTCTCCTTTTATAGTGACGCAGCTAATGGTAGGCCACCTATGGGT
CATCAATGCCTTGATACGTTTTAATTCATGCATGACGCCCGAGCTACCAT
TATGTATCTTTTATCTGCCCTTATCTATCGAAATAAGTGATTTGGACCGT
ATAAATCGCTGTAAACGAGAAGATGGAAGGGAAAGGAAAGGGGCGACAAG
GAAGGCCCAAATGCGTGTTCAATACCCTAAATTCGATTTCCGCAAGGGGA
CGTCTTAGTTCCTGTTCGAACCCCCCCAAGAATGATTTTGTGATGATGAA
CTGACTGAGATGACAAAACAGCTGCGAGTAACGTGACAAAGATAAGGAAA
AGTAAGGAGTAAGACTACAGTGCGC
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protein sequence of NO05G02070.1

>NO05G02070.1-protein ID=NO05G02070.1-protein|Name=NO05G02070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=222bp
MKTAVVLATLFCGAQGFLAPSLPTTDVVARSNSGRLTTKMAEVAGEEPFV
PDMDRRKLMNNILLGSVGLSIAGLAVPYLSFFVPRTGGGSAGGALAATDA
LGRNVTFPGWLATHQAGDRSLVHGLSGDPTYLIVKEDKTIEKYAVNAICT
HLGCIVPWNKAQNKFMCPCHGSQYDKTGKVVRGPAPLSLALAHVNEEDKK
VVVLTPWTETDFRTNEDPWWK*
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mRNA from alignment at chr5:559078..561433+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G02070.1 ID=NO05G02070.1|Name=NO05G02070.1|organism=Nannochloropsis oceanica|type=mRNA|length=2356bp|location=Sequence derived from alignment at chr5:559078..561433+ (Nannochloropsis oceanica)
CCTCGCTATCCCCAACAACTCACACACCGTGGACAGGATCATGATAAAAC
GCACGCCGCTGGCAAGCCTTTCCTCGGAGGAGACAACACATAGAGACTAT
CGGGAAAAGTTGGGGCCTCACCCGTGGTTACCAAGTGTCGTCTCTAGCCG
CGCTCTTTCTACGGCGTCCGAGGTTTCTTGCCGCCTACTATATTTACGGA
AGATGTGCACACGGACTCATGACGTATCGTATTGTTACGGCATTTGGCTA
TGTTGGGCTTTGCCAATCATGACCTAACATGATCACCCCCACGGCCAGCC
ATTCCTTCCGACCCGGGGGATCTCACTCCTCACGTATTTGGACCACGTTG
TCAGATCTCTGGTCACCGCGAAAGAGAACTGAGAAAGAGGGCGAGGAGAG
GCATGGCCTTGCGCCCCGGTACCCAACGACAGCACTACCGGACAACGCCT
GAAGCATTGCAAACGTACTCAATGGCAGTGCCGGCAGGATCACATGTACA
AGCTCTCAGGGTCTTGCAGGGCTGCATGCTCCCTGTAGTGCAATGCTACT
GCCACTGCATCACCATACTCACACGTATCCACGTTTTATCCCAAGCTTAC
TTGGTGTGCTCATCATTTTCCCCATCTACCGACCCCATCTAGACACAGGT
GTGTTTACTCGAATCGACTTTAATTCCGTCCAATCATGAAGACTGCCGTC
GTATTGGCCACCCTCTTTTGCGGCGCTCAAGGCTTCTTGGCGCCCAGCTT
GCCCACGACGGATGTTGTTGCCCGCAGCAACAGCGGGCGATTGACCACCA
AGATGGCTGAGGTGGCGGGCGAGGAGCCTTTTGTCCCCGACATGGACCGC
CGCAAGCTCATGAATAACATTTTGTTGGGCTCCGTGGGCTTGAGCATTGC
CGGTCTGGCCGTCCCTTACCTCTCCTTCTTCGTGCCTCGCACGGGCGGAG
GTAGCGCTGGGGGAGCATTAGCCGCCACGGATGCACTAGGCCGTAATGTG
ACGTTTCCGGGCTGGTTGGCCACCCATCAGGCGGGCGATCGCTCCTTAGT
ACACGGCCTCAGCGGCGATCCCACGTACCTGATCGTGAAGGAGGACAAGA
CCATTGAGAAATATGCCGTGAATGCGATCTGCACGCATTTGGGGTGCATC
GTGCCCTGGAACAAGGCTCAGAACAAATTCATGTGCCCGTGCCACGGCTC
GCAGTACGACAAGACCGGCAAGGTCGTGCGTGGCCCCGCCCCGCTCTCCC
TGGCCCTCGCCCACGTCAACGAGGAGGATAAGAAGGTTGTCGTGCTGACG
CCCTGGACAGAAACGGATTTCCGAACAAACGAGGACCCCTGGTACGTACC
GGTGTAGTGGTTTGTTGTGGTGTGGTAGTTTGTGGTTGGGTGGGCAACTT
GTGGCCGTGCCATTTAGGTGTATTCACTTTTTATTTTCCTTTGCCTATCA
TCCCTTCTTCTTCTCGTCATAGGTGGAAGTAAATCCTCTGGTGGGTCATG
TAAAGTAGATTCGTATAGGAAAAGAGAAGGAAAGCGAGATGCGGGCACGC
AATTGATAGGCAGAGAGGATAACTCCCATTTCAATCTTTGAAAACGGCCT
CCTCTGTAAAGCACCGGGGGAGGAGTTTGATGGGTAGAAAGGAGAGTAGT
GGAACCAACCAAAAATGTGTGGATATGCGTGCATGACTTTGTTTCTTTCT
CTTTTGTCCGTGCAGTGCCGAATGAAAGTGAGGGTGGTCTGCGTCTTGGG
ACTCCTTTTGATTAAACCTTGTGATATTGCATGCACGCTAGCACGGTGAG
GGCGAAGGAAGAGGTTGCCTCGCTCCTCGAGACTTATCATGAATTTAAAT
AATTTAAAATTGGGCCTTACACAATCTAAAAGCTGCGAAAATGATGATTT
TGGTTTGTATTAAGCGTTTTGCTCTATTCCGAGCCTGAGAAGTTGAAGAA
AGCGCCGGCAATGTTCTTCGTTACCCGCGACTGCTCTTCTCCTTTTATAG
TGACGCAGCTAATGGTAGGCCACCTATGGGTCATCAATGCCTTGATACGT
TTTAATTCATGCATGACGCCCGAGCTACCATTATGTATCTTTTATCTGCC
CTTATCTATCGAAATAAGTGATTTGGACCGTATAAATCGCTGTAAACGAG
AAGATGGAAGGGAAAGGAAAGGGGCGACAAGGAAGGCCCAAATGCGTGTT
CAATACCCTAAATTCGATTTCCGCAAGGGGACGTCTTAGTTCCTGTTCGA
ACCCCCCCAAGAATGATTTTGTGATGATGAACTGACTGAGATGACAAAAC
AGCTGCGAGTAACGTGACAAAGATAAGGAAAAGTAAGGAGTAAGACTACA
GTGCGC
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Coding sequence (CDS) from alignment at chr5:559078..561433+

>NO05G02070.1 ID=NO05G02070.1|Name=NO05G02070.1|organism=Nannochloropsis oceanica|type=CDS|length=666bp|location=Sequence derived from alignment at chr5:559078..561433+ (Nannochloropsis oceanica)
ATGAAGACTGCCGTCGTATTGGCCACCCTCTTTTGCGGCGCTCAAGGCTT
CTTGGCGCCCAGCTTGCCCACGACGGATGTTGTTGCCCGCAGCAACAGCG
GGCGATTGACCACCAAGATGGCTGAGGTGGCGGGCGAGGAGCCTTTTGTC
CCCGACATGGACCGCCGCAAGCTCATGAATAACATTTTGTTGGGCTCCGT
GGGCTTGAGCATTGCCGGTCTGGCCGTCCCTTACCTCTCCTTCTTCGTGC
CTCGCACGGGCGGAGGTAGCGCTGGGGGAGCATTAGCCGCCACGGATGCA
CTAGGCCGTAATGTGACGTTTCCGGGCTGGTTGGCCACCCATCAGGCGGG
CGATCGCTCCTTAGTACACGGCCTCAGCGGCGATCCCACGTACCTGATCG
TGAAGGAGGACAAGACCATTGAGAAATATGCCGTGAATGCGATCTGCACG
CATTTGGGGTGCATCGTGCCCTGGAACAAGGCTCAGAACAAATTCATGTG
CCCGTGCCACGGCTCGCAGTACGACAAGACCGGCAAGGTCGTGCGTGGCC
CCGCCCCGCTCTCCCTGGCCCTCGCCCACGTCAACGAGGAGGATAAGAAG
GTTGTCGTGCTGACGCCCTGGACAGAAACGGATTTCCGAACAAACGAGGA
CCCCTGGTGGAAGTAA
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Synonyms
Publications