NO05G02040.1, NO05G02040.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G02040.1
Unique NameNO05G02040.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2106
Alignment locationchr5:549346..551451 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:549346..551451 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G02040.1 vs.
Match: EWM28298.1 (Armadillo-like helical [Nannochloropsis gaditana])

HSP 1 Score: 766.5 bits (1978), Expect = 7.000e-218
Identity = 415/724 (57.32%), Postives = 508/724 (70.17%), Query Frame = 0 
Query:    1 MDFSSSSKAASCLVKRLQQAGTSSSL--LLPAAQLLSSTLMAKPSFMPEDVEAPVQTLLLGASNEAKRWDCLCVGLLVCNDAIARMAPAPALSPAIRETLYSIIARHLEHDEPRVRGLVAKTLGLLCTLPAVGTDAYVHFQAQLWASVDSQLVRRATETRPTNLGALRDIPLDDVTGWRALETSLLALQAVVEGCGPELVRQGLLSSNDWLDKAVYAAAAHTNRYVREAAMKMVHVLVEH--CFSDTNE--ELLPLPSLAVVAAEGLADAWPQVVHAAACATRSLLAAAQM---AGNEDIFDVLLPPLCQSRYYVPEGVQVHAQETWVALFATAR------GKAGSGRETVARYVGEMVEYHCYAVTHGRSHFARVAACYALKELAAKLEGEVVQPFAERMLATVLPCLEDHHWEVRSAGCVTLAQLFENFPGMVVGKEEKVVGLCFARLEDESWSIREEAAWVLAALVRFGGEENGIQSQLAARLMTSLEAVRAQPVQTKEEQLKLYNDPQAHTGRPTLGCCGGEVAQPASAAVHGHSDTPSSSPCRYKAQPWEVSEGALYLFRELCAEDVRP---GGKEGVFAETYLPMLAELGRLQHFADADRLRQSLWRVLPDAMQKLGKSVLKRHLELFTPALLDALASPLVSPLTRHNAVKCLEELSRQIGPSIFLGRLSEEERGLYLRHASFSSSLLYPSAVA-----VGEVVPAAMRQSRPSVVGM 702
            MDFSSS KAASCLVKRL+Q  T S L  LLP AQLLSS L+AKP+F+  DV+ P++ L+     +  RW+CLCV LLV NDAIA  APAPA+SP +R  + ++IA HLEHDEPRVR LVAKTLGLLCTLP+VGTDAY  F  QLWASVD+ + RR TETR   LG  ++I +DDV+GWR+LETSL+AL+ VVE CGPEL+R+ LL+  +WL+K V+ AA H+NRYVREAAM M  V+V+   C SD+    +++    LA V A GLADAWPQVV+AA  ATRSLL  A        ED+F  LLPPLCQ RYY PEGVQV AQETW  LFA A       G AGSGRE VARYV EMV+ HC A+ HGRSHF +VAACYALKEL  K++ +V  PFA ++L  +LPCL   HWE+RSAG V  AQL + FP +V+ + E  V +CF  LEDESWSIREE+AW LAA+ R+ GE+  +Q  L  RL  +L+A R QPV+T+EEQL+ +ND QAHTG P  GCCGG +   A+ +          S  RY AQPWEVSEGALY+F ELC++D+ P         FA+ YLP+LAELG L+HF  ADRLRQSLWR+LP   ++LGK  L+R+L+LFTPAL  ALASP  SPLTRH A+ C+ EL RQ+GPS F+GRLSE ER LY RH    SS   P  +A      G ++P+ +  S+P VV +
Sbjct:    1 MDFSSSLKAASCLVKRLRQETTGSELSTLLPVAQLLSSKLIAKPNFVLTDVDEPLRILM--TLGQEARWECLCVALLVFNDAIAHTAPAPAVSPVLRNAVETVIALHLEHDEPRVRRLVAKTLGLLCTLPSVGTDAYTRFAGQLWASVDANITRRITETRRAKLGVTKNIVMDDVSGWRSLETSLMALREVVEACGPELIRRSLLTP-EWLNKTVFTAAEHSNRYVREAAMDMARVVVDRCVCISDSASCGKVIDFNRLAAVVAGGLADAWPQVVYAAVIATRSLLLTATNHVGVDAEDLFAELLPPLCQCRYYTPEGVQVQAQETWTQLFAAANKRKDDAGSAGSGREAVARYVKEMVDCHCRALQHGRSHFTQVAACYALKELMEKIDEKVTSPFANQILRGILPCLRASHWELRSAGYVAFAQLSQKFPVIVMSRREDAVNVCFVGLEDESWSIREESAWALAAMTRY-GEKTKMQQCLITRLEATLDAARRQPVETEEEQLRRFNDAQAHTGGPVFGCCGGLLHPRATPSGVNLQTDVDMSAYRYAAQPWEVSEGALYIFVELCSKDLLPQIDAVYGSTFADRYLPVLAELGGLRHFYSADRLRQSLWRMLPRVTERLGKPTLRRYLDLFTPALFSALASPAASPLTRHAAMVCIAELCRQMGPSFFVGRLSEAERQLYFRHVPRWSS---PHGIARASRSDGGLIPSLL-LSQPEVVSI 716
The following BLAST results are available for this feature:
BLAST of NO05G02040.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28298.17.000e-21857.32Armadillo-like helical [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G02040NO05G02040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G02040.1NO05G02040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G02040.1.cds1NO05G02040.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G02040.1 ID=NO05G02040.1|Name=NO05G02040.1|organism=Nannochloropsis oceanica|type=mRNA|length=2106bp
ATGGACTTTTCATCGTCCTCGAAGGCGGCCAGCTGCCTGGTCAAGCGCCT
ACAGCAAGCGGGAACGTCTTCCTCCCTGCTCCTGCCGGCCGCTCAACTCC
TGTCTTCGACGCTCATGGCCAAGCCTAGCTTCATGCCCGAGGACGTCGAG
GCACCGGTACAGACCCTTTTGCTTGGCGCATCAAATGAGGCCAAGCGATG
GGACTGTTTGTGCGTAGGACTCTTGGTGTGCAACGATGCCATAGCTCGCA
TGGCCCCCGCCCCGGCACTGTCGCCCGCCATTCGAGAGACGCTTTATTCA
ATCATTGCCCGGCACTTGGAACATGACGAACCGCGTGTGCGCGGCCTGGT
GGCAAAGACTTTGGGCTTGCTTTGCACTTTGCCGGCCGTGGGCACGGACG
CGTATGTGCATTTCCAGGCCCAGTTGTGGGCGAGCGTCGATTCACAACTT
GTCCGGCGCGCCACCGAGACGCGACCGACGAACCTGGGTGCGCTGAGGGA
CATTCCCTTGGACGATGTGACGGGCTGGCGAGCGCTTGAAACATCGCTTT
TGGCATTGCAGGCGGTGGTGGAAGGTTGCGGGCCTGAGTTGGTGCGGCAA
GGATTGCTCTCTTCTAATGACTGGCTGGACAAAGCCGTCTACGCGGCAGC
TGCCCACACCAATCGTTACGTTCGTGAAGCTGCAATGAAGATGGTGCATG
TCCTCGTGGAGCATTGCTTCAGTGACACCAACGAAGAGTTGCTGCCGCTG
CCATCGCTGGCTGTGGTGGCTGCGGAGGGCTTGGCTGATGCCTGGCCTCA
GGTCGTGCATGCTGCTGCTTGTGCCACGCGTAGCCTTTTGGCTGCCGCGC
AAATGGCAGGGAATGAAGACATATTTGATGTGTTGTTACCGCCATTGTGT
CAGAGTCGGTATTATGTTCCGGAGGGGGTTCAAGTGCATGCACAGGAGAC
GTGGGTGGCTTTGTTTGCCACTGCGCGAGGGAAGGCGGGAAGTGGACGGG
AAACAGTAGCGAGGTATGTGGGGGAGATGGTGGAGTATCACTGCTATGCT
GTTACTCACGGCCGTAGTCACTTTGCGAGGGTTGCGGCGTGTTATGCTTT
GAAGGAGTTGGCGGCAAAGTTGGAAGGGGAGGTGGTGCAGCCGTTTGCAG
AGCGGATGCTGGCGACCGTGCTTCCGTGTTTGGAGGACCATCATTGGGAG
GTGCGGTCGGCGGGTTGTGTAACACTGGCGCAGTTGTTTGAAAACTTTCC
GGGGATGGTGGTGGGGAAGGAGGAAAAGGTGGTGGGGTTGTGTTTTGCCC
GGTTGGAGGATGAGTCGTGGTCGATCCGGGAAGAGGCTGCGTGGGTTCTG
GCCGCGCTTGTTCGATTTGGTGGGGAAGAAAATGGGATACAAAGTCAGTT
AGCGGCCCGGTTGATGACTTCATTGGAGGCGGTGCGTGCCCAGCCGGTTC
AGACGAAGGAGGAGCAGCTGAAGCTTTACAATGATCCGCAGGCGCACACC
GGACGACCTACCCTTGGGTGCTGTGGGGGAGAGGTAGCGCAGCCGGCTTC
TGCTGCAGTCCATGGCCACTCGGACACTCCCTCCTCGTCGCCTTGCCGTT
ACAAGGCGCAACCGTGGGAGGTTTCGGAGGGGGCTTTGTACCTTTTCCGA
GAGCTGTGTGCCGAGGACGTGCGCCCGGGCGGGAAGGAGGGTGTATTTGC
GGAGACTTACCTACCTATGTTAGCTGAGCTTGGGCGCCTGCAGCACTTTG
CAGATGCCGACCGCTTGCGTCAGAGCCTATGGCGGGTCTTACCTGATGCG
ATGCAGAAATTGGGAAAGTCAGTTCTGAAGCGGCATCTAGAGCTGTTCAC
CCCTGCCTTGCTCGATGCTTTGGCTTCCCCGTTGGTTAGCCCGCTGACCC
GTCACAACGCTGTCAAGTGCCTGGAGGAATTGAGCCGACAGATTGGACCT
TCTATTTTCCTTGGGCGGCTTTCAGAGGAGGAGCGGGGGCTCTACCTGCG
TCATGCTTCCTTTTCCTCTTCCTTGTTATATCCGTCAGCAGTTGCTGTTG
GTGAGGTGGTGCCTGCGGCGATGCGGCAGTCTCGACCGAGCGTTGTGGGC
ATGTGA
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protein sequence of NO05G02040.1

>NO05G02040.1-protein ID=NO05G02040.1-protein|Name=NO05G02040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=702bp
MDFSSSSKAASCLVKRLQQAGTSSSLLLPAAQLLSSTLMAKPSFMPEDVE
APVQTLLLGASNEAKRWDCLCVGLLVCNDAIARMAPAPALSPAIRETLYS
IIARHLEHDEPRVRGLVAKTLGLLCTLPAVGTDAYVHFQAQLWASVDSQL
VRRATETRPTNLGALRDIPLDDVTGWRALETSLLALQAVVEGCGPELVRQ
GLLSSNDWLDKAVYAAAAHTNRYVREAAMKMVHVLVEHCFSDTNEELLPL
PSLAVVAAEGLADAWPQVVHAAACATRSLLAAAQMAGNEDIFDVLLPPLC
QSRYYVPEGVQVHAQETWVALFATARGKAGSGRETVARYVGEMVEYHCYA
VTHGRSHFARVAACYALKELAAKLEGEVVQPFAERMLATVLPCLEDHHWE
VRSAGCVTLAQLFENFPGMVVGKEEKVVGLCFARLEDESWSIREEAAWVL
AALVRFGGEENGIQSQLAARLMTSLEAVRAQPVQTKEEQLKLYNDPQAHT
GRPTLGCCGGEVAQPASAAVHGHSDTPSSSPCRYKAQPWEVSEGALYLFR
ELCAEDVRPGGKEGVFAETYLPMLAELGRLQHFADADRLRQSLWRVLPDA
MQKLGKSVLKRHLELFTPALLDALASPLVSPLTRHNAVKCLEELSRQIGP
SIFLGRLSEEERGLYLRHASFSSSLLYPSAVAVGEVVPAAMRQSRPSVVG
M*
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mRNA from alignment at chr5:549346..551451-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G02040.1 ID=NO05G02040.1|Name=NO05G02040.1|organism=Nannochloropsis oceanica|type=mRNA|length=2106bp|location=Sequence derived from alignment at chr5:549346..551451- (Nannochloropsis oceanica)
ATGGACTTTTCATCGTCCTCGAAGGCGGCCAGCTGCCTGGTCAAGCGCCT
ACAGCAAGCGGGAACGTCTTCCTCCCTGCTCCTGCCGGCCGCTCAACTCC
TGTCTTCGACGCTCATGGCCAAGCCTAGCTTCATGCCCGAGGACGTCGAG
GCACCGGTACAGACCCTTTTGCTTGGCGCATCAAATGAGGCCAAGCGATG
GGACTGTTTGTGCGTAGGACTCTTGGTGTGCAACGATGCCATAGCTCGCA
TGGCCCCCGCCCCGGCACTGTCGCCCGCCATTCGAGAGACGCTTTATTCA
ATCATTGCCCGGCACTTGGAACATGACGAACCGCGTGTGCGCGGCCTGGT
GGCAAAGACTTTGGGCTTGCTTTGCACTTTGCCGGCCGTGGGCACGGACG
CGTATGTGCATTTCCAGGCCCAGTTGTGGGCGAGCGTCGATTCACAACTT
GTCCGGCGCGCCACCGAGACGCGACCGACGAACCTGGGTGCGCTGAGGGA
CATTCCCTTGGACGATGTGACGGGCTGGCGAGCGCTTGAAACATCGCTTT
TGGCATTGCAGGCGGTGGTGGAAGGTTGCGGGCCTGAGTTGGTGCGGCAA
GGATTGCTCTCTTCTAATGACTGGCTGGACAAAGCCGTCTACGCGGCAGC
TGCCCACACCAATCGTTACGTTCGTGAAGCTGCAATGAAGATGGTGCATG
TCCTCGTGGAGCATTGCTTCAGTGACACCAACGAAGAGTTGCTGCCGCTG
CCATCGCTGGCTGTGGTGGCTGCGGAGGGCTTGGCTGATGCCTGGCCTCA
GGTCGTGCATGCTGCTGCTTGTGCCACGCGTAGCCTTTTGGCTGCCGCGC
AAATGGCAGGGAATGAAGACATATTTGATGTGTTGTTACCGCCATTGTGT
CAGAGTCGGTATTATGTTCCGGAGGGGGTTCAAGTGCATGCACAGGAGAC
GTGGGTGGCTTTGTTTGCCACTGCGCGAGGGAAGGCGGGAAGTGGACGGG
AAACAGTAGCGAGGTATGTGGGGGAGATGGTGGAGTATCACTGCTATGCT
GTTACTCACGGCCGTAGTCACTTTGCGAGGGTTGCGGCGTGTTATGCTTT
GAAGGAGTTGGCGGCAAAGTTGGAAGGGGAGGTGGTGCAGCCGTTTGCAG
AGCGGATGCTGGCGACCGTGCTTCCGTGTTTGGAGGACCATCATTGGGAG
GTGCGGTCGGCGGGTTGTGTAACACTGGCGCAGTTGTTTGAAAACTTTCC
GGGGATGGTGGTGGGGAAGGAGGAAAAGGTGGTGGGGTTGTGTTTTGCCC
GGTTGGAGGATGAGTCGTGGTCGATCCGGGAAGAGGCTGCGTGGGTTCTG
GCCGCGCTTGTTCGATTTGGTGGGGAAGAAAATGGGATACAAAGTCAGTT
AGCGGCCCGGTTGATGACTTCATTGGAGGCGGTGCGTGCCCAGCCGGTTC
AGACGAAGGAGGAGCAGCTGAAGCTTTACAATGATCCGCAGGCGCACACC
GGACGACCTACCCTTGGGTGCTGTGGGGGAGAGGTAGCGCAGCCGGCTTC
TGCTGCAGTCCATGGCCACTCGGACACTCCCTCCTCGTCGCCTTGCCGTT
ACAAGGCGCAACCGTGGGAGGTTTCGGAGGGGGCTTTGTACCTTTTCCGA
GAGCTGTGTGCCGAGGACGTGCGCCCGGGCGGGAAGGAGGGTGTATTTGC
GGAGACTTACCTACCTATGTTAGCTGAGCTTGGGCGCCTGCAGCACTTTG
CAGATGCCGACCGCTTGCGTCAGAGCCTATGGCGGGTCTTACCTGATGCG
ATGCAGAAATTGGGAAAGTCAGTTCTGAAGCGGCATCTAGAGCTGTTCAC
CCCTGCCTTGCTCGATGCTTTGGCTTCCCCGTTGGTTAGCCCGCTGACCC
GTCACAACGCTGTCAAGTGCCTGGAGGAATTGAGCCGACAGATTGGACCT
TCTATTTTCCTTGGGCGGCTTTCAGAGGAGGAGCGGGGGCTCTACCTGCG
TCATGCTTCCTTTTCCTCTTCCTTGTTATATCCGTCAGCAGTTGCTGTTG
GTGAGGTGGTGCCTGCGGCGATGCGGCAGTCTCGACCGAGCGTTGTGGGC
ATGTGA
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Coding sequence (CDS) from alignment at chr5:549346..551451-

>NO05G02040.1 ID=NO05G02040.1|Name=NO05G02040.1|organism=Nannochloropsis oceanica|type=CDS|length=2106bp|location=Sequence derived from alignment at chr5:549346..551451- (Nannochloropsis oceanica)
ATGGACTTTTCATCGTCCTCGAAGGCGGCCAGCTGCCTGGTCAAGCGCCT
ACAGCAAGCGGGAACGTCTTCCTCCCTGCTCCTGCCGGCCGCTCAACTCC
TGTCTTCGACGCTCATGGCCAAGCCTAGCTTCATGCCCGAGGACGTCGAG
GCACCGGTACAGACCCTTTTGCTTGGCGCATCAAATGAGGCCAAGCGATG
GGACTGTTTGTGCGTAGGACTCTTGGTGTGCAACGATGCCATAGCTCGCA
TGGCCCCCGCCCCGGCACTGTCGCCCGCCATTCGAGAGACGCTTTATTCA
ATCATTGCCCGGCACTTGGAACATGACGAACCGCGTGTGCGCGGCCTGGT
GGCAAAGACTTTGGGCTTGCTTTGCACTTTGCCGGCCGTGGGCACGGACG
CGTATGTGCATTTCCAGGCCCAGTTGTGGGCGAGCGTCGATTCACAACTT
GTCCGGCGCGCCACCGAGACGCGACCGACGAACCTGGGTGCGCTGAGGGA
CATTCCCTTGGACGATGTGACGGGCTGGCGAGCGCTTGAAACATCGCTTT
TGGCATTGCAGGCGGTGGTGGAAGGTTGCGGGCCTGAGTTGGTGCGGCAA
GGATTGCTCTCTTCTAATGACTGGCTGGACAAAGCCGTCTACGCGGCAGC
TGCCCACACCAATCGTTACGTTCGTGAAGCTGCAATGAAGATGGTGCATG
TCCTCGTGGAGCATTGCTTCAGTGACACCAACGAAGAGTTGCTGCCGCTG
CCATCGCTGGCTGTGGTGGCTGCGGAGGGCTTGGCTGATGCCTGGCCTCA
GGTCGTGCATGCTGCTGCTTGTGCCACGCGTAGCCTTTTGGCTGCCGCGC
AAATGGCAGGGAATGAAGACATATTTGATGTGTTGTTACCGCCATTGTGT
CAGAGTCGGTATTATGTTCCGGAGGGGGTTCAAGTGCATGCACAGGAGAC
GTGGGTGGCTTTGTTTGCCACTGCGCGAGGGAAGGCGGGAAGTGGACGGG
AAACAGTAGCGAGGTATGTGGGGGAGATGGTGGAGTATCACTGCTATGCT
GTTACTCACGGCCGTAGTCACTTTGCGAGGGTTGCGGCGTGTTATGCTTT
GAAGGAGTTGGCGGCAAAGTTGGAAGGGGAGGTGGTGCAGCCGTTTGCAG
AGCGGATGCTGGCGACCGTGCTTCCGTGTTTGGAGGACCATCATTGGGAG
GTGCGGTCGGCGGGTTGTGTAACACTGGCGCAGTTGTTTGAAAACTTTCC
GGGGATGGTGGTGGGGAAGGAGGAAAAGGTGGTGGGGTTGTGTTTTGCCC
GGTTGGAGGATGAGTCGTGGTCGATCCGGGAAGAGGCTGCGTGGGTTCTG
GCCGCGCTTGTTCGATTTGGTGGGGAAGAAAATGGGATACAAAGTCAGTT
AGCGGCCCGGTTGATGACTTCATTGGAGGCGGTGCGTGCCCAGCCGGTTC
AGACGAAGGAGGAGCAGCTGAAGCTTTACAATGATCCGCAGGCGCACACC
GGACGACCTACCCTTGGGTGCTGTGGGGGAGAGGTAGCGCAGCCGGCTTC
TGCTGCAGTCCATGGCCACTCGGACACTCCCTCCTCGTCGCCTTGCCGTT
ACAAGGCGCAACCGTGGGAGGTTTCGGAGGGGGCTTTGTACCTTTTCCGA
GAGCTGTGTGCCGAGGACGTGCGCCCGGGCGGGAAGGAGGGTGTATTTGC
GGAGACTTACCTACCTATGTTAGCTGAGCTTGGGCGCCTGCAGCACTTTG
CAGATGCCGACCGCTTGCGTCAGAGCCTATGGCGGGTCTTACCTGATGCG
ATGCAGAAATTGGGAAAGTCAGTTCTGAAGCGGCATCTAGAGCTGTTCAC
CCCTGCCTTGCTCGATGCTTTGGCTTCCCCGTTGGTTAGCCCGCTGACCC
GTCACAACGCTGTCAAGTGCCTGGAGGAATTGAGCCGACAGATTGGACCT
TCTATTTTCCTTGGGCGGCTTTCAGAGGAGGAGCGGGGGCTCTACCTGCG
TCATGCTTCCTTTTCCTCTTCCTTGTTATATCCGTCAGCAGTTGCTGTTG
GTGAGGTGGTGCCTGCGGCGATGCGGCAGTCTCGACCGAGCGTTGTGGGC
ATGTGA
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Synonyms
Publications