NO05G02010.2, NO05G02010.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G02010.2
Unique NameNO05G02010.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2199
Alignment locationchr5:543253..545692 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:543253..545692 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO05G02010.2 vs.
Match: EWM28217.1 (metal-dependent amidohydrolase 3 [Nannochloropsis gaditana])

HSP 1 Score: 611.3 bits (1575), Expect = 2.700e-171
Identity = 307/489 (62.78%), Postives = 371/489 (75.87%), Query Frame = 0
Query:    1 MLLLHNARLWQWDDDSAASSSSSSLSSSSGRLTQPEAGWCLIDTTKGIFDAVGCVAD--DDEEHAAYKAAQAKATRIIDMNMKCAEGSIILPGLIDAHIHVGYMGEAQEYLQLSGCRTLSELGAAVAAYGKMHPSKSWVVGVGWDQSAWGGDYPSRQDLDKAMGDDKRPVVLYRACWHIVVANTAALEVSGISLIPAKKPPAGIDIDAISGFPTGIFRENAVSSITDHIAEADDDVRETYFRNALNQCLRAGLTSVQTNDSNAWHLYRKLESQQKLPLRVFLTVNHDEFESNVNHSQPLHPSFASPSSLLSCERVKLYSDGSLGAETAALRSPYVGTTNTGMLIHTLEELREKIKSAHKAGFQLEVHAIGNRALETVLDALEGAEVPSGARPVITHCQVMGEDLMERMAWQGVVASIQPSFVSTDCKWVQARLPVEVQRVSYCWKSLGERGVMCAGGSDAPVEDCRPLGGIYDAMHRVPHAGKPRGGRK 488
            MLLL NA  WQWD D+   S         GRL +   GWCLID  +G+FD V C  +   D++ +AY+ AQA+ATR+IDM  KC EG+I+LPGLID+HIHVGYMGEA EYLQL G R+L +L  AV  YGK +P KSW++GVGWDQS WGG YP+RQ LD+AM +DKRP+VLYR CWHIVVANTAAL+ +GI L P  +  +G+D+DA SG PTGIFRE AV  IT+HIAE ++ +RE Y RNALN CLRAGLT+VQTND  AW++Y+ LE++ +LPLRVFLT+N++EFE      QP   +  S   L +C R+KLYSDGSLGAETAALRSPY G+TN G+LIH +E+L  KI  +H+AGFQLEVHAIG+RAL TVL+AL+ A +  GARPVITHCQV+GEDL+ RMA QGVVASIQPSFV TDC+W+Q RLP  V + SYCWKSL E GV CAGGSD+PVE C PL GIYDAMHR+ HA K    +K
Sbjct:   28 MLLLKNACFWQWDPDTLPFS---------GRLAE---GWCLIDDVRGVFDTVFCEDNLCIDDQRSAYEQAQAQATRVIDM--KCNEGNILLPGLIDSHIHVGYMGEACEYLQLRGTRSLDDLSTAVRNYGKENPKKSWIIGVGWDQSGWGGCYPTRQVLDEAMREDKRPLVLYRECWHIVVANTAALQRAGIRLTPTNEHFSGVDLDA-SGVPTGIFRETAVLLITNHIAENNEKLREVYIRNALNNCLRAGLTAVQTNDIKAWNIYQNLEAKGELPLRVFLTINYEEFEEE--GKQPNFHTLNSKPPLFTCRRIKLYSDGSLGAETAALRSPYPGSTNRGLLIHNVEDLAAKICHSHEAGFQLEVHAIGDRALSTVLEALKRARIKPGARPVITHCQVLGEDLINRMAKQGVVASIQPSFVGTDCQWIQERLPSHVLKTSYCWKSLLENGVYCAGGSDSPVEGCEPLSGIYDAMHRLSHASKLTARKK 499          
The following BLAST results are available for this feature:
BLAST of NO05G02010.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28217.12.700e-17162.78metal-dependent amidohydrolase 3 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G02010NO05G02010Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G02010.2NO05G02010.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G02010.2.cds1NO05G02010.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02010.2.cds2NO05G02010.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G02010.2 ID=NO05G02010.2|Name=NO05G02010.2|organism=Nannochloropsis oceanica|type=mRNA|length=2199bp
TGAAAAACATAGAGCCGTGTCAGACTATGGTTATGGTGCCATGGTTGGTG
GGCTTTGTGATATAAGAGTGAAAAAATATAAGAGTGGAAGGTGAGAGGCG
ATCGGGGAAATGCTAGATACGAGCACAGAGGAAACGACAACCTCCCCGCT
CGCTCCTTCCCACTCTTACGTACACTGCCACATATCACACAACGCCCTAC
ATCATACCAATCAGTGGAATCTACCCACGACATTGTCAGGGAGCGTATCA
CCGACTTGATCCGTATGCTGCTCCTCCACAATGCTCGTCTGTGGCAATGG
GACGACGACTCAGCCGCATCCTCGTCCTCGTCCTCTCTCTCGTCCTCATC
AGGACGTCTTACCCAGCCCGAGGCAGGGTGGTGCCTCATCGACACGACAA
AAGGCATATTCGATGCAGTGGGTTGTGTAGCAGACGACGACGAAGAGCAT
GCGGCCTACAAGGCTGCGCAAGCCAAGGCGACCCGCATTATTGACATGAA
CATGAAATGCGCCGAAGGCAGCATTATTCTACCGGGTCTAATCGACGCGC
ACATTCACGTCGGTTACATGGGTGAGGCGCAAGAATACCTGCAACTTTCT
GGCTGTCGCACCTTGTCAGAGCTGGGTGCGGCCGTGGCGGCCTACGGCAA
GATGCATCCAAGCAAATCGTGGGTTGTGGGAGTAGGTTGGGACCAATCAG
CCTGGGGTGGAGATTATCCCTCGCGGCAGGACTTGGACAAAGCCATGGGT
GACGATAAGCGGCCTGTCGTATTGTACCGTGCATGTTGGCACATAGTCGT
GGCCAATACGGCTGCTTTGGAAGTAAGTGGGATATCGCTGATTCCCGCGA
AGAAGCCACCCGCTGGAATAGATATCGACGCCATTAGCGGCTTCCCTACG
GGAATCTTTCGAGAGAATGCAGTCTCAAGCATCACAGACCACATCGCCGA
AGCCGACGACGACGTTCGCGAGACCTACTTCCGGAACGCCCTCAACCAGT
GCCTCCGCGCAGGCCTCACGTCGGTTCAAACAAATGACAGCAATGCCTGG
CACCTTTACCGTAAGCTGGAATCTCAGCAGAAACTCCCCCTCCGCGTCTT
TCTCACCGTCAACCACGACGAATTTGAGAGCAACGTTAACCACAGCCAGC
CCCTCCATCCCTCCTTCGCCTCCCCCTCCTCTCTCCTCTCCTGCGAGCGT
GTAAAACTCTACTCCGACGGAAGTCTCGGTGCAGAAACTGCAGCATTGCG
TTCTCCCTACGTTGGTACTACCAACACCGGCATGCTTATCCATACACTCG
AAGAACTCAGAGAAAAAATCAAGAGTGCGCACAAAGCAGGATTTCAGCTG
GAGGTTCATGCGATAGGAAATCGAGCTTTAGAGACAGTGTTGGACGCGCT
GGAAGGGGCAGAGGTGCCTTCGGGAGCTCGACCCGTGATAACTCATTGTC
AAGTCATGGGGGAAGATCTGATGGAAAGGATGGCCTGGCAGGGGGTAGTT
GCTTCGATCCAGCCGTCGTTTGTCTCGACGGATTGTAAGTGGGTCCAAGC
CCGGCTGCCGGTTGAGGTGCAGCGTGTGTCGTATTGCTGGAAGAGTCTTG
GGGAGCGAGGAGTGATGTGTGCAGGGGGATCGGATGCCCCAGTGGAGGAC
TGTCGGCCTTTGGGAGGGATTTATGACGCGATGCACCGGGTGCCGCATGC
GGGTAAGCCGAGGGGGGGAAGGAAGGATGGAGGGAGGAAAGGGAAGTGGC
ATTTTTGCCGGAGGAGTGTTTGAGTTTCTCGGAAGCTTTAAGGCTGTACA
CAATTGGTGGAGCGTATGCTTGTCATGCGGAGAGAAAGCTGGGTCGGATA
GCACCGGGGTATCAGGCTGATTTTGTTGTGATTGATAGGGATGTGACTGG
GCCGAGGAGGGAGGAGGACTGTCGGCACGCGTTGCTTGAGGCGGCCGTGG
AGCAAGTGTGGGTTGGGGGTGTGTGTCGCCTTGATACAAAAGGGGAAAAC
GAAAGAAAGGTGTTCGCATCGGCTGCAATTTTGGGGGGGCCCTTCATTCC
GGGCAAAAATGGGCCGCTCCGAGGACAAGGACGAAAGCAACCGCAACAGC
TGGAGGAGGAGGGCATGTGGGTACTGCAAAACAAACGGTTGGGTGCGGGC
TGTTGTGGCCATTGAACATTTAAAATATAGTGTAGTATGTATTCAGTTG
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protein sequence of NO05G02010.2

>NO05G02010.2-protein ID=NO05G02010.2-protein|Name=NO05G02010.2|organism=Nannochloropsis oceanica|type=polypeptide|length=503bp
MLLLHNARLWQWDDDSAASSSSSSLSSSSGRLTQPEAGWCLIDTTKGIFD
AVGCVADDDEEHAAYKAAQAKATRIIDMNMKCAEGSIILPGLIDAHIHVG
YMGEAQEYLQLSGCRTLSELGAAVAAYGKMHPSKSWVVGVGWDQSAWGGD
YPSRQDLDKAMGDDKRPVVLYRACWHIVVANTAALEVSGISLIPAKKPPA
GIDIDAISGFPTGIFRENAVSSITDHIAEADDDVRETYFRNALNQCLRAG
LTSVQTNDSNAWHLYRKLESQQKLPLRVFLTVNHDEFESNVNHSQPLHPS
FASPSSLLSCERVKLYSDGSLGAETAALRSPYVGTTNTGMLIHTLEELRE
KIKSAHKAGFQLEVHAIGNRALETVLDALEGAEVPSGARPVITHCQVMGE
DLMERMAWQGVVASIQPSFVSTDCKWVQARLPVEVQRVSYCWKSLGERGV
MCAGGSDAPVEDCRPLGGIYDAMHRVPHAGKPRGGRKDGGRKGKWHFCRR
SV*
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mRNA from alignment at chr5:543253..545692-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G02010.2 ID=NO05G02010.2|Name=NO05G02010.2|organism=Nannochloropsis oceanica|type=mRNA|length=2440bp|location=Sequence derived from alignment at chr5:543253..545692- (Nannochloropsis oceanica)
TGAAAAACATAGAGCCGTGTCAGACTATGGTTATGGTGCCATGGTTGGTG GGCTTTGTGATATAAGAGTGAAAAAATATAAGAGTGGAAGGTGAGAGGCG ATCGGGGAAATGCTAGATACGAGCACAGAGGAAACGACAACCTCCCCGCT CGCTCCTTCCCACTCTTACGTACACTGCCACATATCACACAACGCCCTAC ATCATACCAATCAGTGGAATCTACCCACGACATTGTCAGGGAGCGTATCA CCGACTTGATCCGTATGCTGCTCCTCCACAATGCTCGTCTGTGGCAATGG GACGACGACTCAGCCGCATCCTCGTCCTCGTCCTCTCTCTCGTCCTCATC AGGACGTCTTACCCAGCCCGAGGCAGGGTGGTGCCTCATCGACACGACAA AAGGCATATTCGATGCAGTGGGTTGTGTAGCAGACGACGACGAAGAGCAT GCGGCCTACAAGGCTGCGCAAGCCAAGGCGACCCGCATTATTGACATGAA CATGAAATGCGCCGAAGGCAGCATTATTCTACCGGGTCTAATCGACGCGC ACATTCACGTCGGTTACATGGGTGAGGCGCAAGAATACCTGCAACTTTCT GGCTGTCGCACCTTGTCAGAGCTGGGTGCGGCCGTGGCGGCCTACGGCAA GATGCATCCAAGCAAATCGTGGGTTGTGGGAGTAGGTTGGGACCAATCAG CCTGGGGTGGAGATTATCCCTCGCGGCAGGACTTGGACAAAGCCATGGGT GACGATAAGCGGCCTGTCGTATTGTACCGTGCATGTTGGCACATAGTCGT GGCCAATACGGCTGCTTTGGAAGTAAGTGGGATATCGCTGATTCCCGCGA AGAAGGTGGGTTAGGGGGAAATGCAAGGGAATTCAGGACACGTTTGTATG CTTTCCGATTTTATTAGTGGGTGGTCCGGTGCATTTACGATGCAATTTTC CCCCTTTACTAAAGTGGTGTAGAAGTCAACAAGTAAACTTTGATTCATGC ATCCTCCTAATTTGTATAAGCCTTTCCTGAACCCAATGAGAGGTCGCACA CCTGTCCCCCCCCGCTTTCTGTCCCCCCTCTCACCACAATCAATAGCCAC CCGCTGGAATAGATATCGACGCCATTAGCGGCTTCCCTACGGGAATCTTT CGAGAGAATGCAGTCTCAAGCATCACAGACCACATCGCCGAAGCCGACGA CGACGTTCGCGAGACCTACTTCCGGAACGCCCTCAACCAGTGCCTCCGCG CAGGCCTCACGTCGGTTCAAACAAATGACAGCAATGCCTGGCACCTTTAC CGTAAGCTGGAATCTCAGCAGAAACTCCCCCTCCGCGTCTTTCTCACCGT CAACCACGACGAATTTGAGAGCAACGTTAACCACAGCCAGCCCCTCCATC CCTCCTTCGCCTCCCCCTCCTCTCTCCTCTCCTGCGAGCGTGTAAAACTC TACTCCGACGGAAGTCTCGGTGCAGAAACTGCAGCATTGCGTTCTCCCTA CGTTGGTACTACCAACACCGGCATGCTTATCCATACACTCGAAGAACTCA GAGAAAAAATCAAGAGTGCGCACAAAGCAGGATTTCAGCTGGAGGTTCAT GCGATAGGAAATCGAGCTTTAGAGACAGTGTTGGACGCGCTGGAAGGGGC AGAGGTGCCTTCGGGAGCTCGACCCGTGATAACTCATTGTCAAGTCATGG GGGAAGATCTGATGGAAAGGATGGCCTGGCAGGGGGTAGTTGCTTCGATC CAGCCGTCGTTTGTCTCGACGGATTGTAAGTGGGTCCAAGCCCGGCTGCC GGTTGAGGTGCAGCGTGTGTCGTATTGCTGGAAGAGTCTTGGGGAGCGAG GAGTGATGTGTGCAGGGGGATCGGATGCCCCAGTGGAGGACTGTCGGCCT TTGGGAGGGATTTATGACGCGATGCACCGGGTGCCGCATGCGGGTAAGCC GAGGGGGGGAAGGAAGGATGGAGGGAGGAAAGGGAAGTGGCATTTTTGCC GGAGGAGTGTTTGAGTTTCTCGGAAGCTTTAAGGCTGTACACAATTGGTG GAGCGTATGCTTGTCATGCGGAGAGAAAGCTGGGTCGGATAGCACCGGGG TATCAGGCTGATTTTGTTGTGATTGATAGGGATGTGACTGGGCCGAGGAG GGAGGAGGACTGTCGGCACGCGTTGCTTGAGGCGGCCGTGGAGCAAGTGT GGGTTGGGGGTGTGTGTCGCCTTGATACAAAAGGGGAAAACGAAAGAAAG GTGTTCGCATCGGCTGCAATTTTGGGGGGGCCCTTCATTCCGGGCAAAAA TGGGCCGCTCCGAGGACAAGGACGAAAGCAACCGCAACAGCTGGAGGAGG AGGGCATGTGGGTACTGCAAAACAAACGGTTGGGTGCGGGCTGTTGTGGC CATTGAACATTTAAAATATAGTGTAGTATGTATTCAGTTG
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Coding sequence (CDS) from alignment at chr5:543253..545692-

>NO05G02010.2 ID=NO05G02010.2|Name=NO05G02010.2|organism=Nannochloropsis oceanica|type=CDS|length=1509bp|location=Sequence derived from alignment at chr5:543253..545692- (Nannochloropsis oceanica)
ATGCTGCTCCTCCACAATGCTCGTCTGTGGCAATGGGACGACGACTCAGC
CGCATCCTCGTCCTCGTCCTCTCTCTCGTCCTCATCAGGACGTCTTACCC
AGCCCGAGGCAGGGTGGTGCCTCATCGACACGACAAAAGGCATATTCGAT
GCAGTGGGTTGTGTAGCAGACGACGACGAAGAGCATGCGGCCTACAAGGC
TGCGCAAGCCAAGGCGACCCGCATTATTGACATGAACATGAAATGCGCCG
AAGGCAGCATTATTCTACCGGGTCTAATCGACGCGCACATTCACGTCGGT
TACATGGGTGAGGCGCAAGAATACCTGCAACTTTCTGGCTGTCGCACCTT
GTCAGAGCTGGGTGCGGCCGTGGCGGCCTACGGCAAGATGCATCCAAGCA
AATCGTGGGTTGTGGGAGTAGGTTGGGACCAATCAGCCTGGGGTGGAGAT
TATCCCTCGCGGCAGGACTTGGACAAAGCCATGGGTGACGATAAGCGGCC
TGTCGTATTGTACCGTGCATGTTGGCACATAGTCGTGGCCAATACGGCTG
CTTTGGAAGTAAGTGGGATATCGCTGATTCCCGCGAAGAAGCCACCCGCT
GGAATAGATATCGACGCCATTAGCGGCTTCCCTACGGGAATCTTTCGAGA
GAATGCAGTCTCAAGCATCACAGACCACATCGCCGAAGCCGACGACGACG
TTCGCGAGACCTACTTCCGGAACGCCCTCAACCAGTGCCTCCGCGCAGGC
CTCACGTCGGTTCAAACAAATGACAGCAATGCCTGGCACCTTTACCGTAA
GCTGGAATCTCAGCAGAAACTCCCCCTCCGCGTCTTTCTCACCGTCAACC
ACGACGAATTTGAGAGCAACGTTAACCACAGCCAGCCCCTCCATCCCTCC
TTCGCCTCCCCCTCCTCTCTCCTCTCCTGCGAGCGTGTAAAACTCTACTC
CGACGGAAGTCTCGGTGCAGAAACTGCAGCATTGCGTTCTCCCTACGTTG
GTACTACCAACACCGGCATGCTTATCCATACACTCGAAGAACTCAGAGAA
AAAATCAAGAGTGCGCACAAAGCAGGATTTCAGCTGGAGGTTCATGCGAT
AGGAAATCGAGCTTTAGAGACAGTGTTGGACGCGCTGGAAGGGGCAGAGG
TGCCTTCGGGAGCTCGACCCGTGATAACTCATTGTCAAGTCATGGGGGAA
GATCTGATGGAAAGGATGGCCTGGCAGGGGGTAGTTGCTTCGATCCAGCC
GTCGTTTGTCTCGACGGATTGTAAGTGGGTCCAAGCCCGGCTGCCGGTTG
AGGTGCAGCGTGTGTCGTATTGCTGGAAGAGTCTTGGGGAGCGAGGAGTG
ATGTGTGCAGGGGGATCGGATGCCCCAGTGGAGGACTGTCGGCCTTTGGG
AGGGATTTATGACGCGATGCACCGGGTGCCGCATGCGGGTAAGCCGAGGG
GGGGAAGGAAGGATGGAGGGAGGAAAGGGAAGTGGCATTTTTGCCGGAGG
AGTGTTTGA
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Synonyms
Publications