NO05G01980.2, NO05G01980.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G01980.2
Unique NameNO05G01980.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1914
Alignment locationchr5:538355..540664 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:538355..540664 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO05G01980.2 vs.
Match: EWM28289.1 (arp1 actin-related protein 1 centractin beta [Nannochloropsis gaditana])

HSP 1 Score: 496.9 bits (1278), Expect = 4.000e-137
Identity = 233/273 (85.35%), Postives = 259/273 (94.87%), Query Frame = 0 
Query:    1 MEGITNQPIVIDNGTGILKAGFAGGDRPRVIFSSAVGRPKHVRMMPGGALEGTDVCVGSKLQEHRGAFRWSYPMEHGMVVDWQDMERVWGHIYSRDHLNVPSEEHPVLLTEAPLNPLTNREKAAEVLFETFNVPALFIAPQAILSLYASGRTTGVVLDSGDGVSHVVPVYEGFALPHAITRTDVAGRDVTDQLQLLLRRSGRNLQTSAEKEVVRQIKEEKCYVSFNPRKEEETPPHADAYQLPDGVTLMVGAERFRAPEILFRPELIGSEEKG 274
            MEGI+NQPIVIDNGTG LKAGFAGGDRPRV+FSSAVGRPKHVR+MPGGALEG D+CVG KLQEHRGAFRWSYPMEHG+VVDWQ+ME+VWGH+YSRD+LNVPSE+HPVLLTEAPLNPL NREKA+EVLFE+FNVPA+F+APQAILSLYASGRTTGVVLDSGDGVSHVVPVYEGFALPHAI+RTDVAGRDVTD LQLLLRRSG  L TSAEK++VRQIKEEKCY+SF+PRKEEE PP  D ++LPDG  +++G+ERFRAPEILF+PELIGSEEKG
Sbjct:    1 MEGISNQPIVIDNGTGTLKAGFAGGDRPRVVFSSAVGRPKHVRIMPGGALEGVDLCVGKKLQEHRGAFRWSYPMEHGVVVDWQEMEQVWGHLYSRDNLNVPSEDHPVLLTEAPLNPLVNREKASEVLFESFNVPAIFLAPQAILSLYASGRTTGVVLDSGDGVSHVVPVYEGFALPHAISRTDVAGRDVTDHLQLLLRRSGYKLHTSAEKDIVRQIKEEKCYLSFDPRKEEEAPPQPDTFRLPDGTHILMGSERFRAPEILFQPELIGSEEKG 273
The following BLAST results are available for this feature:
BLAST of NO05G01980.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28289.14.000e-13785.35arp1 actin-related protein 1 centractin beta [Nann... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G01980NO05G01980Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G01980.2NO05G01980.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G01980.2.cds1NO05G01980.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G01980.2.cds2NO05G01980.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G01980.2.cds3NO05G01980.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G01980.2.cds4NO05G01980.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G01980.2 ID=NO05G01980.2|Name=NO05G01980.2|organism=Nannochloropsis oceanica|type=mRNA|length=1914bp
AGGGTCGTAGCCATCCATACGCGTAGCTAGGTGGGCTCCGGTTGACTCAA
TTGCGCCCTGCCGCGGCCACGCCTGTCGCTCGCTGACCCTCGCTCACCGC
TCAGCCATCGCCAAGGCAGCTCACGTTCTTCAGTCCCACATTCTTGCGAC
CACAAACCACTAGCATGGAAGGCATAACAAACCAGCCCATAGTTATTGAC
AATGGCACGGGCATTCTCAAGGCCGGCTTTGCGGGTGGCGATCGGCCGCG
TGTCATTTTCTCCTCGGCGGTCGGGCGGCCTAAACATGTCCGGATGATGC
CAGGCGGGGCATTGGAGGGGACGGACGTGTGCGTGGGGAGCAAACTGCAA
GAGCACAGGGGGGCTTTTCGTTGGAGCTATCCAATGGAGCACGGGATGGT
GGTAGATTGGCAAGACATGGAGCGGGTTTGGGGCCATATTTATTCGCGGG
ACCATTTGAATGTGCCTTCCGAAGAACATCCGGTTTTACTGACCGAGGCG
CCTTTGAACCCGCTAACCAACCGCGAAAAGGCAGCAGAAGTGCTTTTCGA
GACTTTCAATGTTCCGGCCCTATTCATAGCGCCGCAGGCCATCCTAAGCC
TCTACGCCTCAGGGCGGACGACCGGCGTGGTGCTCGACTCAGGGGATGGA
GTCAGTCATGTGGTGCCGGTGTACGAGGGTTTTGCCTTGCCTCACGCCAT
TACACGCACCGATGTGGCGGGGCGGGATGTTACGGATCAATTGCAGCTAC
TGCTGCGACGGTCGGGCCGCAACCTCCAAACATCCGCCGAGAAGGAAGTA
GTTCGTCAAATCAAGGAAGAAAAATGCTACGTCTCGTTTAACCCCCGCAA
GGAAGAAGAGACCCCGCCCCACGCTGACGCTTACCAATTACCAGATGGCG
TTACCCTTATGGTGGGTGCTGAGCGATTCCGTGCGCCGGAGATATTGTTT
CGGCCGGAGCTGATCGGGAGTGAGGAGAAGGGTAGGTGAGGGAGGGAGGG
GGAAGATGGCGGAGGGGATGTAGAAGATTTGGCGGGACAAACATAGTTGA
ATCAGCGGGACGAGGATAGAGGTACTGGACTATTTACATCGAAATCGTCA
AGATCCATTAATAGGCTTTTTCCTCGACCAGCGCTTTCCACACTCCCTTA
ACCCTGTCATCCTTCGGCTCTCCTTCCTCTCCACCCCCCACCACAGGCGT
GCACGAATGCGTAGTCAGCAGCGTTCTGAAAGCCGACCTAGACCTGCGCA
AGGCCTTTTTCAGTCAAATTGTGCTTGCAGGGGGCTCTACCCTCTTCCCT
GGATACGGCGATCGCCTCTTGAACGAGATTCGCAAGCTAGCCCCTCGAGA
TGTGAAAATTAGGATATCAGCCCCGCCGGAACGGAAGCACTCCACATGGA
TTGGCGGGTGGGTGTTTGAGGGTGGGGAGGGGTGGAACGGGAGAGGGGGG
AGATATAGGGGGAGAAAAATGGGTAAGAGGGTTTATTGAGTATGGCTCGC
TGGCATGGCTGAAGGTGCCTTCGATTGCTTACTTGCCTGGTTCATCTTGT
GGTAGGCTCATCCCTCTTCCTGACTACAACTCCCGCTCATTCATTACTCC
CTCCTCCTGTTGCTCTCCCCCCACCACCCTCCCTTTAAAACAACAACCAT
AAGGTCCATCCTTGCCTCCCTCGCGACATTCAAGTCTCTCTGGGTCACCC
GCAGCCAATATCAGGAGCACGGCGCTGCCATCGTCAATAAACGAACATTG
TAAGAGAAAGCAGGCGCAATAAAGACAAAATGAAAGAAATGTGCGCTGCT
GATGCAGACTGGATGTAAAAATATCGGCCGATGAAGTGACGAACTCGAAC
GAACGACGTATGACAGAAAGAAGAAGCATTTTTGAAAAGAAAAAGTAGTC
TTCGAATATAGTGA
back to top

protein sequence of NO05G01980.2

>NO05G01980.2-protein ID=NO05G01980.2-protein|Name=NO05G01980.2|organism=Nannochloropsis oceanica|type=polypeptide|length=275bp
MEGITNQPIVIDNGTGILKAGFAGGDRPRVIFSSAVGRPKHVRMMPGGAL
EGTDVCVGSKLQEHRGAFRWSYPMEHGMVVDWQDMERVWGHIYSRDHLNV
PSEEHPVLLTEAPLNPLTNREKAAEVLFETFNVPALFIAPQAILSLYASG
RTTGVVLDSGDGVSHVVPVYEGFALPHAITRTDVAGRDVTDQLQLLLRRS
GRNLQTSAEKEVVRQIKEEKCYVSFNPRKEEETPPHADAYQLPDGVTLMV
GAERFRAPEILFRPELIGSEEKGR*
back to top

mRNA from alignment at chr5:538355..540664+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G01980.2 ID=NO05G01980.2|Name=NO05G01980.2|organism=Nannochloropsis oceanica|type=mRNA|length=2310bp|location=Sequence derived from alignment at chr5:538355..540664+ (Nannochloropsis oceanica)
AGGGTCGTAGCCATCCATACGCGTAGCTAGGTGGGCTCCGGTTGACTCAA
TTGCGCCCTGCCGCGGCCACGCCTGTCGCTCGCTGACCCTCGCTCACCGC
TCAGCCATCGCCAAGGCAGCTCACGTTCTTCAGTCCCACATTCTTGCGAC
CACAAACCACTAGCATGGAAGGCATAACAAACCAGCCCATAGTTATTGAC
AATGGCACGGGCATTCTCAAGGCCGGCTTTGCGGGTGGCGATCGGCCGCG
TGTCATTTTCTCCTCGGCGGTCGGGCGGCCTAAACATGTCCGGATGATGC
CAGGCGGGGCATTGGAGGGGACGGACGTGTGCGTGGGGAGCAAACTGCAA
GAGCACAGGGGGGCTTTTCGTTGGAGCTATCCAATGGAGCACGGGATGGT
GGTAGATTGGCAAGACATGGAGCGGGTTTGGGGCCATATTTATTCGCGGG
ACCATTTGAATGTGCCTTCCGAAGAACATCCGGTACGTGTGTGTGCTGCC
GTGTCAGGTGTGGTGGGTGATTTGGCGGCAGCAGAAGATGTCAATTCATG
AATATATATAAGTTATGTAACCGTACATACACCGCATAAATAGGTTTTAC
TGACCGAGGCGCCTTTGAACCCGCTAACCAACCGCGAAAAGGCAGCAGAA
GTGCTTTTCGAGACTTTCAATGTTCCGGCCCTATTCATAGCGCCGCAGGT
GAGAAAGATTTTTGTTCGATAAATGGGGCCGATAAGTGAGGGAAGATGAT
TTGAGTAAAGTATTTAGCAAGAAATACTTTCATGTTCGTGCCCGCATCTC
TGCCCTTGTTTGTTTCCCCTTTTTACTCACACTTCTCCTCTCCCTCTATC
CTCAACGAATAGGCCATCCTAAGCCTCTACGCCTCAGGGCGGACGACCGG
CGTGGTGCTCGACTCAGGGGATGGAGTCAGTCATGTGGTGCCGGTGTACG
AGGGTTTTGCCTTGCCTCACGCCATTACACGCACCGATGTGGCGGGGCGG
GATGTTACGGATCAATTGCAGGTAGGGGCCGGAGGCAGGACAAGAAGTTG
GAAAGGTGCGGGAGGTGAAGAAATTAGACCTCAAGTGACATAGCTGCATC
GTCTTCACTCTAATCAGTACTTTGAATTTATTTATAACACAGCTACTGCT
GCGACGGTCGGGCCGCAACCTCCAAACATCCGCCGAGAAGGAAGTAGTTC
GTCAAATCAAGGAAGAAAAATGCTACGTCTCGTTTAACCCCCGCAAGGAA
GAAGAGACCCCGCCCCACGCTGACGCTTACCAATTACCAGATGGCGTTAC
CCTTATGGTGGGTGCTGAGCGATTCCGTGCGCCGGAGATATTGTTTCGGC
CGGAGCTGATCGGGAGTGAGGAGAAGGGTAGGTGAGGGAGGGAGGGGGAA
GATGGCGGAGGGGATGTAGAAGATTTGGCGGGACAAACATAGTTGAATCA
GCGGGACGAGGATAGAGGTACTGGACTATTTACATCGAAATCGTCAAGAT
CCATTAATAGGCTTTTTCCTCGACCAGCGCTTTCCACACTCCCTTAACCC
TGTCATCCTTCGGCTCTCCTTCCTCTCCACCCCCCACCACAGGCGTGCAC
GAATGCGTAGTCAGCAGCGTTCTGAAAGCCGACCTAGACCTGCGCAAGGC
CTTTTTCAGTCAAATTGTGCTTGCAGGGGGCTCTACCCTCTTCCCTGGAT
ACGGCGATCGCCTCTTGAACGAGATTCGCAAGCTAGCCCCTCGAGATGTG
AAAATTAGGATATCAGCCCCGCCGGAACGGAAGCACTCCACATGGATTGG
CGGGTGGGTGTTTGAGGGTGGGGAGGGGTGGAACGGGAGAGGGGGGAGAT
ATAGGGGGAGAAAAATGGGTAAGAGGGTTTATTGAGTATGGCTCGCTGGC
ATGGCTGAAGGTGCCTTCGATTGCTTACTTGCCTGGTTCATCTTGTGGTA
GGCTCATCCCTCTTCCTGACTACAACTCCCGCTCATTCATTACTCCCTCC
TCCTGTTGCTCTCCCCCCACCACCCTCCCTTTAAAACAACAACCATAAGG
TCCATCCTTGCCTCCCTCGCGACATTCAAGTCTCTCTGGGTCACCCGCAG
CCAATATCAGGAGCACGGCGCTGCCATCGTCAATAAACGAACATTGTAAG
AGAAAGCAGGCGCAATAAAGACAAAATGAAAGAAATGTGCGCTGCTGATG
CAGACTGGATGTAAAAATATCGGCCGATGAAGTGACGAACTCGAACGAAC
GACGTATGACAGAAAGAAGAAGCATTTTTGAAAAGAAAAAGTAGTCTTCG
AATATAGTGA
back to top

Coding sequence (CDS) from alignment at chr5:538355..540664+

>NO05G01980.2 ID=NO05G01980.2|Name=NO05G01980.2|organism=Nannochloropsis oceanica|type=CDS|length=825bp|location=Sequence derived from alignment at chr5:538355..540664+ (Nannochloropsis oceanica)
ATGGAAGGCATAACAAACCAGCCCATAGTTATTGACAATGGCACGGGCAT
TCTCAAGGCCGGCTTTGCGGGTGGCGATCGGCCGCGTGTCATTTTCTCCT
CGGCGGTCGGGCGGCCTAAACATGTCCGGATGATGCCAGGCGGGGCATTG
GAGGGGACGGACGTGTGCGTGGGGAGCAAACTGCAAGAGCACAGGGGGGC
TTTTCGTTGGAGCTATCCAATGGAGCACGGGATGGTGGTAGATTGGCAAG
ACATGGAGCGGGTTTGGGGCCATATTTATTCGCGGGACCATTTGAATGTG
CCTTCCGAAGAACATCCGGTTTTACTGACCGAGGCGCCTTTGAACCCGCT
AACCAACCGCGAAAAGGCAGCAGAAGTGCTTTTCGAGACTTTCAATGTTC
CGGCCCTATTCATAGCGCCGCAGGCCATCCTAAGCCTCTACGCCTCAGGG
CGGACGACCGGCGTGGTGCTCGACTCAGGGGATGGAGTCAGTCATGTGGT
GCCGGTGTACGAGGGTTTTGCCTTGCCTCACGCCATTACACGCACCGATG
TGGCGGGGCGGGATGTTACGGATCAATTGCAGCTACTGCTGCGACGGTCG
GGCCGCAACCTCCAAACATCCGCCGAGAAGGAAGTAGTTCGTCAAATCAA
GGAAGAAAAATGCTACGTCTCGTTTAACCCCCGCAAGGAAGAAGAGACCC
CGCCCCACGCTGACGCTTACCAATTACCAGATGGCGTTACCCTTATGGTG
GGTGCTGAGCGATTCCGTGCGCCGGAGATATTGTTTCGGCCGGAGCTGAT
CGGGAGTGAGGAGAAGGGTAGGTGA
back to top
Synonyms
Publications