NO05G01970.1, NO05G01970.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G01970.1
Unique NameNO05G01970.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2107
Alignment locationchr5:536096..538202 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:536096..538202 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO05G01970.1 vs.
Match: EWM28152.1 (ankyrin repeat and btb poz domain-containing protein 1 isoform 2 [Nannochloropsis gaditana])

HSP 1 Score: 535.4 bits (1378), Expect = 2.200e-148
Identity = 314/598 (52.51%), Postives = 420/598 (70.23%), Query Frame = 0
Query:    3 SATPSTTIATTTFPPHLDIWRAAREGDLPLLSYLVETKGHNINRINEVNASPLYYAALCGHVACVEYMLGMGAVADEGDFMGERCFYAALNDPLRRLLRQSKMTRAHREPFLECLRLLFEQKDGLWPDVSFHYN-TSSNSRNKSNTTIEISSGSSRENSGRAFWQCHQVVLRTRCEFFARQFKQGKWK-RCRRGKHISPPFSSFSSIAV--LHSQEAFACVLQYLYTARLELPLYLLRDCVKLSHLLRLTDLKEELQKKVIECAIREEE----EEEQRAMGVGGGSSRRHLLKQQQQRQKVLIIEPRKEAVVEHFKALAREVVTRFPDDADFVIFTADGKSFALHRVILCARSQYFRTMLKSGFAEGQGGGGG-GGEAVPGAGAGVDAGAGSVEEGIGGRRKASSIASTEDGKEEGAEEEGAEEEGAEE--EDASSGALLSIHLSISSEALRKVLEYMYCDECLTPLSVPAVFEVLDAATRYMLSGLRKQCSNALMENAEEIDIFFLLELGRMYDLPRLENFVMERMADILEEVVWTDEFLEMVRKSAATVDKREEIDSIPVVDEIRFFVYRMHKFDRNGELERKLGLINQLLEKLGL 590
            +  P+T+  T  FPPHLD+WRAAREG+L LL++L+ETKGHN+N +NEV+ASPLYYAALCGHV CV+Y+L MGAVADEG FMGERCF+AALNDPLR LLR SKMTRA+REPFLE LR ++E K+  WPDV+F    T+ + + K++  +  S+G  +E SG     CHQV+LR R  F  ++F + + + RC R   +   + + SS+++  LHS +AFAC+LQYLY +RLE+PLYLL D +++S +L L  L  ELQ+   + A+  E       E +++     S        +Q+RQ++LI+EP+KE ++EHFK LA EVVTRFP+DAD V+FT DGKSFALHRVIL ARS YFRTML+SGF EGQ  G       +P      +    S E    G ++        + K++ + ++  EE+GA    + +   AL SIHLS+S EALR+V+E+MYCDE L+PL VP VF+VLDAAT +ML GLR  C +ALME+ ++IDIF LLE+ R+YDLPRLENFV+ERMA  LE+VV  D+F  +V +SAATV  REE DSIP++D+IR+FV R+H+FD++ + E K+ LI  LLE+LGL
Sbjct:    2 AGNPATSNITMAFPPHLDVWRAAREGNLQLLTFLIETKGHNVNVVNEVDASPLYYAALCGHVDCVKYLLLMGAVADEGTFMGERCFFAALNDPLRHLLRCSKMTRAYREPFLESLRFMYENKEVWWPDVAFVCRATAFDPKWKASEGVG-SAGGVQEKSGLF---CHQVILRARSAFLIQEFNKRRVETRCGRRGGLGVAWGTASSLSIPLLHSHKAFACILQYLYCSRLEMPLYLLDDGIRISRILHLPGLGLELQRASDKIAMARERGIQCHRELKSLKYHSSSKHSAFYVSRQRRQEMLIVEPKKETLIEHFKLLAEEVVTRFPEDADVVLFTGDGKSFALHRVILAARSPYFRTMLRSGFKEGQQAGRLIVPHILPTMEVSAETRIFSSEINYKGSKRVMGEKKDLE-KKKPSNQDQVEEKGANACCDASEPQALPSIHLSLSGEALRRVIEFMYCDEPLSPLEVPLVFDVLDAATLFMLPGLRNYCVSALMEHVDKIDIFSLLEVARLYDLPRLENFVVERMAINLEKVVEADKFRLLVEESAATVKAREERDSIPLIDDIRYFVCRLHRFDQDVQ-EMKIALIESLLERLGL 593          
The following BLAST results are available for this feature:
BLAST of NO05G01970.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28152.12.200e-14852.51ankyrin repeat and btb poz domain-containing prote... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G01970NO05G01970Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G01970.1NO05G01970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G01970.1.cds1NO05G01970.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G01970.1 ID=NO05G01970.1|Name=NO05G01970.1|organism=Nannochloropsis oceanica|type=mRNA|length=2107bp
ACAGCCATAGATGCCAGGTACAATTTTGGCGTAGACAAGCGCGCGGATCC
AATATCAATGAGGGCGATTGTTTGTCAAGGCCGCCGTCCAATCGCTCTCG
ACCTCCTCCCGACGACTCGGAGGTGAATACTACTAGTATTCACCAGTATA
GTACAGTACCGCAAAGTGACTACCGACTGAGTGTGCCTTCCCTGGGGTTT
CCGCTTTCTCTCGCCACAGAATGACGTCCGCCACTCCCTCCACCACTATA
GCTACCACCACATTTCCACCTCACCTCGATATTTGGCGTGCCGCCAGGGA
AGGAGATTTACCCTTGCTCTCGTACCTGGTGGAAACAAAAGGGCACAATA
TCAATAGGATAAACGAGGTCAACGCTTCTCCATTGTACTACGCAGCGCTT
TGCGGCCATGTGGCGTGCGTAGAGTATATGTTGGGGATGGGGGCTGTCGC
GGACGAAGGCGACTTTATGGGGGAACGATGCTTTTATGCCGCGCTTAATG
ACCCACTCCGGCGCTTGTTGAGACAGAGCAAAATGACACGCGCACACCGC
GAACCATTTTTGGAGTGCCTACGATTGCTTTTCGAGCAAAAGGATGGATT
ATGGCCTGATGTGAGCTTTCATTACAACACCTCTAGCAACAGCAGGAACA
AAAGTAACACCACGATTGAAATCAGTAGTGGCAGCAGCAGGGAGAACTCT
GGTCGTGCATTTTGGCAATGCCACCAAGTCGTTCTTCGTACCCGCTGCGA
GTTTTTTGCCCGCCAATTCAAACAAGGGAAATGGAAACGCTGCCGGAGGG
GTAAGCACATATCTCCACCTTTCTCCTCTTTTTCATCTATCGCCGTGCTG
CATTCCCAAGAGGCATTTGCCTGCGTGTTGCAGTATTTATACACGGCGCG
GTTGGAATTGCCATTATATTTACTGAGGGATTGTGTGAAGCTCAGTCATT
TGCTGCGACTGACTGATTTGAAAGAAGAACTTCAGAAAAAAGTAATCGAA
TGCGCAATTAGAGAGGAGGAGGAGGAGGAACAGAGGGCCATGGGTGTGGG
AGGTGGATCCAGTCGCCGTCACTTGCTCAAGCAACAGCAGCAGCGACAAA
AAGTATTGATTATCGAGCCAAGAAAAGAGGCGGTAGTTGAGCACTTCAAG
GCGCTAGCCCGGGAGGTTGTGACGAGGTTCCCTGACGATGCTGACTTTGT
CATTTTCACGGCGGACGGGAAGAGTTTCGCATTGCACCGGGTAATATTGT
GTGCGCGGAGTCAATATTTTAGGACCATGCTCAAGTCAGGTTTTGCGGAG
GGGCAAGGAGGAGGAGGAGGAGGAGGGGAAGCGGTTCCTGGTGCTGGTGC
TGGTGTTGATGCTGGTGCTGGTTCGGTGGAGGAGGGAATAGGTGGGAGGA
GGAAAGCGAGTAGTATCGCCAGCACGGAGGATGGGAAGGAGGAGGGAGCG
GAGGAGGAGGGAGCGGAGGAGGAGGGAGCGGAGGAGGAGGATGCGAGCAG
CGGGGCGCTTCTCTCCATCCATCTCTCCATTTCGTCTGAGGCCTTGCGGA
AGGTACTGGAGTATATGTATTGCGATGAGTGTTTGACCCCTCTTTCTGTC
CCCGCTGTCTTCGAGGTTCTCGACGCTGCAACTCGCTACATGCTATCTGG
TCTGAGGAAGCAGTGCAGCAACGCTCTAATGGAAAACGCCGAAGAAATCG
ACATCTTTTTCTTGTTGGAGTTGGGGAGAATGTACGACTTGCCACGCCTT
GAAAACTTTGTGATGGAACGAATGGCAGATATATTGGAGGAGGTGGTGTG
GACGGATGAGTTTTTGGAAATGGTTAGGAAGAGTGCAGCGACGGTGGACA
AAAGAGAGGAGATTGATTCTATTCCAGTGGTGGATGAGATACGGTTTTTT
GTGTATCGCATGCACAAGTTTGACAGGAACGGGGAGCTGGAAAGGAAATT
GGGGTTGATCAATCAGCTGTTGGAGAAACTGGGATTGGGTTCGTAATTAT
AAAAGAATGGTAGGAGGGAAGGAGAGGCGAGGGATTAGAGAAGATTAGTA
GATAAGATGTGAAAATGAAAATGTATTTGACAAGCGAGAGAGAACTGGGA
AGAAATA
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protein sequence of NO05G01970.1

>NO05G01970.1-protein ID=NO05G01970.1-protein|Name=NO05G01970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=592bp
MTSATPSTTIATTTFPPHLDIWRAAREGDLPLLSYLVETKGHNINRINEV
NASPLYYAALCGHVACVEYMLGMGAVADEGDFMGERCFYAALNDPLRRLL
RQSKMTRAHREPFLECLRLLFEQKDGLWPDVSFHYNTSSNSRNKSNTTIE
ISSGSSRENSGRAFWQCHQVVLRTRCEFFARQFKQGKWKRCRRGKHISPP
FSSFSSIAVLHSQEAFACVLQYLYTARLELPLYLLRDCVKLSHLLRLTDL
KEELQKKVIECAIREEEEEEQRAMGVGGGSSRRHLLKQQQQRQKVLIIEP
RKEAVVEHFKALAREVVTRFPDDADFVIFTADGKSFALHRVILCARSQYF
RTMLKSGFAEGQGGGGGGGEAVPGAGAGVDAGAGSVEEGIGGRRKASSIA
STEDGKEEGAEEEGAEEEGAEEEDASSGALLSIHLSISSEALRKVLEYMY
CDECLTPLSVPAVFEVLDAATRYMLSGLRKQCSNALMENAEEIDIFFLLE
LGRMYDLPRLENFVMERMADILEEVVWTDEFLEMVRKSAATVDKREEIDS
IPVVDEIRFFVYRMHKFDRNGELERKLGLINQLLEKLGLGS*
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mRNA from alignment at chr5:536096..538202-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G01970.1 ID=NO05G01970.1|Name=NO05G01970.1|organism=Nannochloropsis oceanica|type=mRNA|length=2107bp|location=Sequence derived from alignment at chr5:536096..538202- (Nannochloropsis oceanica)
ACAGCCATAGATGCCAGGTACAATTTTGGCGTAGACAAGCGCGCGGATCC AATATCAATGAGGGCGATTGTTTGTCAAGGCCGCCGTCCAATCGCTCTCG ACCTCCTCCCGACGACTCGGAGGTGAATACTACTAGTATTCACCAGTATA GTACAGTACCGCAAAGTGACTACCGACTGAGTGTGCCTTCCCTGGGGTTT CCGCTTTCTCTCGCCACAGAATGACGTCCGCCACTCCCTCCACCACTATA GCTACCACCACATTTCCACCTCACCTCGATATTTGGCGTGCCGCCAGGGA AGGAGATTTACCCTTGCTCTCGTACCTGGTGGAAACAAAAGGGCACAATA TCAATAGGATAAACGAGGTCAACGCTTCTCCATTGTACTACGCAGCGCTT TGCGGCCATGTGGCGTGCGTAGAGTATATGTTGGGGATGGGGGCTGTCGC GGACGAAGGCGACTTTATGGGGGAACGATGCTTTTATGCCGCGCTTAATG ACCCACTCCGGCGCTTGTTGAGACAGAGCAAAATGACACGCGCACACCGC GAACCATTTTTGGAGTGCCTACGATTGCTTTTCGAGCAAAAGGATGGATT ATGGCCTGATGTGAGCTTTCATTACAACACCTCTAGCAACAGCAGGAACA AAAGTAACACCACGATTGAAATCAGTAGTGGCAGCAGCAGGGAGAACTCT GGTCGTGCATTTTGGCAATGCCACCAAGTCGTTCTTCGTACCCGCTGCGA GTTTTTTGCCCGCCAATTCAAACAAGGGAAATGGAAACGCTGCCGGAGGG GTAAGCACATATCTCCACCTTTCTCCTCTTTTTCATCTATCGCCGTGCTG CATTCCCAAGAGGCATTTGCCTGCGTGTTGCAGTATTTATACACGGCGCG GTTGGAATTGCCATTATATTTACTGAGGGATTGTGTGAAGCTCAGTCATT TGCTGCGACTGACTGATTTGAAAGAAGAACTTCAGAAAAAAGTAATCGAA TGCGCAATTAGAGAGGAGGAGGAGGAGGAACAGAGGGCCATGGGTGTGGG AGGTGGATCCAGTCGCCGTCACTTGCTCAAGCAACAGCAGCAGCGACAAA AAGTATTGATTATCGAGCCAAGAAAAGAGGCGGTAGTTGAGCACTTCAAG GCGCTAGCCCGGGAGGTTGTGACGAGGTTCCCTGACGATGCTGACTTTGT CATTTTCACGGCGGACGGGAAGAGTTTCGCATTGCACCGGGTAATATTGT GTGCGCGGAGTCAATATTTTAGGACCATGCTCAAGTCAGGTTTTGCGGAG GGGCAAGGAGGAGGAGGAGGAGGAGGGGAAGCGGTTCCTGGTGCTGGTGC TGGTGTTGATGCTGGTGCTGGTTCGGTGGAGGAGGGAATAGGTGGGAGGA GGAAAGCGAGTAGTATCGCCAGCACGGAGGATGGGAAGGAGGAGGGAGCG GAGGAGGAGGGAGCGGAGGAGGAGGGAGCGGAGGAGGAGGATGCGAGCAG CGGGGCGCTTCTCTCCATCCATCTCTCCATTTCGTCTGAGGCCTTGCGGA AGGTACTGGAGTATATGTATTGCGATGAGTGTTTGACCCCTCTTTCTGTC CCCGCTGTCTTCGAGGTTCTCGACGCTGCAACTCGCTACATGCTATCTGG TCTGAGGAAGCAGTGCAGCAACGCTCTAATGGAAAACGCCGAAGAAATCG ACATCTTTTTCTTGTTGGAGTTGGGGAGAATGTACGACTTGCCACGCCTT GAAAACTTTGTGATGGAACGAATGGCAGATATATTGGAGGAGGTGGTGTG GACGGATGAGTTTTTGGAAATGGTTAGGAAGAGTGCAGCGACGGTGGACA AAAGAGAGGAGATTGATTCTATTCCAGTGGTGGATGAGATACGGTTTTTT GTGTATCGCATGCACAAGTTTGACAGGAACGGGGAGCTGGAAAGGAAATT GGGGTTGATCAATCAGCTGTTGGAGAAACTGGGATTGGGTTCGTAATTAT AAAAGAATGGTAGGAGGGAAGGAGAGGCGAGGGATTAGAGAAGATTAGTA GATAAGATGTGAAAATGAAAATGTATTTGACAAGCGAGAGAGAACTGGGA AGAAATA
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Coding sequence (CDS) from alignment at chr5:536096..538202-

>NO05G01970.1 ID=NO05G01970.1|Name=NO05G01970.1|organism=Nannochloropsis oceanica|type=CDS|length=1776bp|location=Sequence derived from alignment at chr5:536096..538202- (Nannochloropsis oceanica)
ATGACGTCCGCCACTCCCTCCACCACTATAGCTACCACCACATTTCCACC
TCACCTCGATATTTGGCGTGCCGCCAGGGAAGGAGATTTACCCTTGCTCT
CGTACCTGGTGGAAACAAAAGGGCACAATATCAATAGGATAAACGAGGTC
AACGCTTCTCCATTGTACTACGCAGCGCTTTGCGGCCATGTGGCGTGCGT
AGAGTATATGTTGGGGATGGGGGCTGTCGCGGACGAAGGCGACTTTATGG
GGGAACGATGCTTTTATGCCGCGCTTAATGACCCACTCCGGCGCTTGTTG
AGACAGAGCAAAATGACACGCGCACACCGCGAACCATTTTTGGAGTGCCT
ACGATTGCTTTTCGAGCAAAAGGATGGATTATGGCCTGATGTGAGCTTTC
ATTACAACACCTCTAGCAACAGCAGGAACAAAAGTAACACCACGATTGAA
ATCAGTAGTGGCAGCAGCAGGGAGAACTCTGGTCGTGCATTTTGGCAATG
CCACCAAGTCGTTCTTCGTACCCGCTGCGAGTTTTTTGCCCGCCAATTCA
AACAAGGGAAATGGAAACGCTGCCGGAGGGGTAAGCACATATCTCCACCT
TTCTCCTCTTTTTCATCTATCGCCGTGCTGCATTCCCAAGAGGCATTTGC
CTGCGTGTTGCAGTATTTATACACGGCGCGGTTGGAATTGCCATTATATT
TACTGAGGGATTGTGTGAAGCTCAGTCATTTGCTGCGACTGACTGATTTG
AAAGAAGAACTTCAGAAAAAAGTAATCGAATGCGCAATTAGAGAGGAGGA
GGAGGAGGAACAGAGGGCCATGGGTGTGGGAGGTGGATCCAGTCGCCGTC
ACTTGCTCAAGCAACAGCAGCAGCGACAAAAAGTATTGATTATCGAGCCA
AGAAAAGAGGCGGTAGTTGAGCACTTCAAGGCGCTAGCCCGGGAGGTTGT
GACGAGGTTCCCTGACGATGCTGACTTTGTCATTTTCACGGCGGACGGGA
AGAGTTTCGCATTGCACCGGGTAATATTGTGTGCGCGGAGTCAATATTTT
AGGACCATGCTCAAGTCAGGTTTTGCGGAGGGGCAAGGAGGAGGAGGAGG
AGGAGGGGAAGCGGTTCCTGGTGCTGGTGCTGGTGTTGATGCTGGTGCTG
GTTCGGTGGAGGAGGGAATAGGTGGGAGGAGGAAAGCGAGTAGTATCGCC
AGCACGGAGGATGGGAAGGAGGAGGGAGCGGAGGAGGAGGGAGCGGAGGA
GGAGGGAGCGGAGGAGGAGGATGCGAGCAGCGGGGCGCTTCTCTCCATCC
ATCTCTCCATTTCGTCTGAGGCCTTGCGGAAGGTACTGGAGTATATGTAT
TGCGATGAGTGTTTGACCCCTCTTTCTGTCCCCGCTGTCTTCGAGGTTCT
CGACGCTGCAACTCGCTACATGCTATCTGGTCTGAGGAAGCAGTGCAGCA
ACGCTCTAATGGAAAACGCCGAAGAAATCGACATCTTTTTCTTGTTGGAG
TTGGGGAGAATGTACGACTTGCCACGCCTTGAAAACTTTGTGATGGAACG
AATGGCAGATATATTGGAGGAGGTGGTGTGGACGGATGAGTTTTTGGAAA
TGGTTAGGAAGAGTGCAGCGACGGTGGACAAAAGAGAGGAGATTGATTCT
ATTCCAGTGGTGGATGAGATACGGTTTTTTGTGTATCGCATGCACAAGTT
TGACAGGAACGGGGAGCTGGAAAGGAAATTGGGGTTGATCAATCAGCTGT
TGGAGAAACTGGGATTGGGTTCGTAA
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Synonyms
Publications