|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr5 | genome | chr5:536096..538202 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G01970.1 vs.
Match: EWM28152.1 (ankyrin repeat and btb poz domain-containing protein 1 isoform 2 [Nannochloropsis gaditana]) HSP 1 Score: 535.4 bits (1378), Expect = 2.200e-148 Identity = 314/598 (52.51%), Postives = 420/598 (70.23%), Query Frame = 0
Query: 3 SATPSTTIATTTFPPHLDIWRAAREGDLPLLSYLVETKGHNINRINEVNASPLYYAALCGHVACVEYMLGMGAVADEGDFMGERCFYAALNDPLRRLLRQSKMTRAHREPFLECLRLLFEQKDGLWPDVSFHYN-TSSNSRNKSNTTIEISSGSSRENSGRAFWQCHQVVLRTRCEFFARQFKQGKWK-RCRRGKHISPPFSSFSSIAV--LHSQEAFACVLQYLYTARLELPLYLLRDCVKLSHLLRLTDLKEELQKKVIECAIREEE----EEEQRAMGVGGGSSRRHLLKQQQQRQKVLIIEPRKEAVVEHFKALAREVVTRFPDDADFVIFTADGKSFALHRVILCARSQYFRTMLKSGFAEGQGGGGG-GGEAVPGAGAGVDAGAGSVEEGIGGRRKASSIASTEDGKEEGAEEEGAEEEGAEE--EDASSGALLSIHLSISSEALRKVLEYMYCDECLTPLSVPAVFEVLDAATRYMLSGLRKQCSNALMENAEEIDIFFLLELGRMYDLPRLENFVMERMADILEEVVWTDEFLEMVRKSAATVDKREEIDSIPVVDEIRFFVYRMHKFDRNGELERKLGLINQLLEKLGL 590
+ P+T+ T FPPHLD+WRAAREG+L LL++L+ETKGHN+N +NEV+ASPLYYAALCGHV CV+Y+L MGAVADEG FMGERCF+AALNDPLR LLR SKMTRA+REPFLE LR ++E K+ WPDV+F T+ + + K++ + S+G +E SG CHQV+LR R F ++F + + + RC R + + + SS+++ LHS +AFAC+LQYLY +RLE+PLYLL D +++S +L L L ELQ+ + A+ E E +++ S +Q+RQ++LI+EP+KE ++EHFK LA EVVTRFP+DAD V+FT DGKSFALHRVIL ARS YFRTML+SGF EGQ G +P + S E G ++ + K++ + ++ EE+GA + + AL SIHLS+S EALR+V+E+MYCDE L+PL VP VF+VLDAAT +ML GLR C +ALME+ ++IDIF LLE+ R+YDLPRLENFV+ERMA LE+VV D+F +V +SAATV REE DSIP++D+IR+FV R+H+FD++ + E K+ LI LLE+LGL
Sbjct: 2 AGNPATSNITMAFPPHLDVWRAAREGNLQLLTFLIETKGHNVNVVNEVDASPLYYAALCGHVDCVKYLLLMGAVADEGTFMGERCFFAALNDPLRHLLRCSKMTRAYREPFLESLRFMYENKEVWWPDVAFVCRATAFDPKWKASEGVG-SAGGVQEKSGLF---CHQVILRARSAFLIQEFNKRRVETRCGRRGGLGVAWGTASSLSIPLLHSHKAFACILQYLYCSRLEMPLYLLDDGIRISRILHLPGLGLELQRASDKIAMARERGIQCHRELKSLKYHSSSKHSAFYVSRQRRQEMLIVEPKKETLIEHFKLLAEEVVTRFPEDADVVLFTGDGKSFALHRVILAARSPYFRTMLRSGFKEGQQAGRLIVPHILPTMEVSAETRIFSSEINYKGSKRVMGEKKDLE-KKKPSNQDQVEEKGANACCDASEPQALPSIHLSLSGEALRRVIEFMYCDEPLSPLEVPLVFDVLDAATLFMLPGLRNYCVSALMEHVDKIDIFSLLEVARLYDLPRLENFVVERMAINLEKVVEADKFRLLVEESAATVKAREERDSIPLIDDIRYFVCRLHRFDQDVQ-EMKIALIESLLERLGL 593
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G01970.1 ID=NO05G01970.1|Name=NO05G01970.1|organism=Nannochloropsis oceanica|type=mRNA|length=2107bp ACAGCCATAGATGCCAGGTACAATTTTGGCGTAGACAAGCGCGCGGATCC AATATCAATGAGGGCGATTGTTTGTCAAGGCCGCCGTCCAATCGCTCTCG ACCTCCTCCCGACGACTCGGAGGTGAATACTACTAGTATTCACCAGTATA GTACAGTACCGCAAAGTGACTACCGACTGAGTGTGCCTTCCCTGGGGTTT CCGCTTTCTCTCGCCACAGAATGACGTCCGCCACTCCCTCCACCACTATA GCTACCACCACATTTCCACCTCACCTCGATATTTGGCGTGCCGCCAGGGA AGGAGATTTACCCTTGCTCTCGTACCTGGTGGAAACAAAAGGGCACAATA TCAATAGGATAAACGAGGTCAACGCTTCTCCATTGTACTACGCAGCGCTT TGCGGCCATGTGGCGTGCGTAGAGTATATGTTGGGGATGGGGGCTGTCGC GGACGAAGGCGACTTTATGGGGGAACGATGCTTTTATGCCGCGCTTAATG ACCCACTCCGGCGCTTGTTGAGACAGAGCAAAATGACACGCGCACACCGC GAACCATTTTTGGAGTGCCTACGATTGCTTTTCGAGCAAAAGGATGGATT ATGGCCTGATGTGAGCTTTCATTACAACACCTCTAGCAACAGCAGGAACA AAAGTAACACCACGATTGAAATCAGTAGTGGCAGCAGCAGGGAGAACTCT GGTCGTGCATTTTGGCAATGCCACCAAGTCGTTCTTCGTACCCGCTGCGA GTTTTTTGCCCGCCAATTCAAACAAGGGAAATGGAAACGCTGCCGGAGGG GTAAGCACATATCTCCACCTTTCTCCTCTTTTTCATCTATCGCCGTGCTG CATTCCCAAGAGGCATTTGCCTGCGTGTTGCAGTATTTATACACGGCGCG GTTGGAATTGCCATTATATTTACTGAGGGATTGTGTGAAGCTCAGTCATT TGCTGCGACTGACTGATTTGAAAGAAGAACTTCAGAAAAAAGTAATCGAA TGCGCAATTAGAGAGGAGGAGGAGGAGGAACAGAGGGCCATGGGTGTGGG AGGTGGATCCAGTCGCCGTCACTTGCTCAAGCAACAGCAGCAGCGACAAA AAGTATTGATTATCGAGCCAAGAAAAGAGGCGGTAGTTGAGCACTTCAAG GCGCTAGCCCGGGAGGTTGTGACGAGGTTCCCTGACGATGCTGACTTTGT CATTTTCACGGCGGACGGGAAGAGTTTCGCATTGCACCGGGTAATATTGT GTGCGCGGAGTCAATATTTTAGGACCATGCTCAAGTCAGGTTTTGCGGAG GGGCAAGGAGGAGGAGGAGGAGGAGGGGAAGCGGTTCCTGGTGCTGGTGC TGGTGTTGATGCTGGTGCTGGTTCGGTGGAGGAGGGAATAGGTGGGAGGA GGAAAGCGAGTAGTATCGCCAGCACGGAGGATGGGAAGGAGGAGGGAGCG GAGGAGGAGGGAGCGGAGGAGGAGGGAGCGGAGGAGGAGGATGCGAGCAG CGGGGCGCTTCTCTCCATCCATCTCTCCATTTCGTCTGAGGCCTTGCGGA AGGTACTGGAGTATATGTATTGCGATGAGTGTTTGACCCCTCTTTCTGTC CCCGCTGTCTTCGAGGTTCTCGACGCTGCAACTCGCTACATGCTATCTGG TCTGAGGAAGCAGTGCAGCAACGCTCTAATGGAAAACGCCGAAGAAATCG ACATCTTTTTCTTGTTGGAGTTGGGGAGAATGTACGACTTGCCACGCCTT GAAAACTTTGTGATGGAACGAATGGCAGATATATTGGAGGAGGTGGTGTG GACGGATGAGTTTTTGGAAATGGTTAGGAAGAGTGCAGCGACGGTGGACA AAAGAGAGGAGATTGATTCTATTCCAGTGGTGGATGAGATACGGTTTTTT GTGTATCGCATGCACAAGTTTGACAGGAACGGGGAGCTGGAAAGGAAATT GGGGTTGATCAATCAGCTGTTGGAGAAACTGGGATTGGGTTCGTAATTAT AAAAGAATGGTAGGAGGGAAGGAGAGGCGAGGGATTAGAGAAGATTAGTA GATAAGATGTGAAAATGAAAATGTATTTGACAAGCGAGAGAGAACTGGGA AGAAATA back to topprotein sequence of NO05G01970.1 >NO05G01970.1-protein ID=NO05G01970.1-protein|Name=NO05G01970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=592bp MTSATPSTTIATTTFPPHLDIWRAAREGDLPLLSYLVETKGHNINRINEV NASPLYYAALCGHVACVEYMLGMGAVADEGDFMGERCFYAALNDPLRRLL RQSKMTRAHREPFLECLRLLFEQKDGLWPDVSFHYNTSSNSRNKSNTTIE ISSGSSRENSGRAFWQCHQVVLRTRCEFFARQFKQGKWKRCRRGKHISPP FSSFSSIAVLHSQEAFACVLQYLYTARLELPLYLLRDCVKLSHLLRLTDL KEELQKKVIECAIREEEEEEQRAMGVGGGSSRRHLLKQQQQRQKVLIIEP RKEAVVEHFKALAREVVTRFPDDADFVIFTADGKSFALHRVILCARSQYF RTMLKSGFAEGQGGGGGGGEAVPGAGAGVDAGAGSVEEGIGGRRKASSIA STEDGKEEGAEEEGAEEEGAEEEDASSGALLSIHLSISSEALRKVLEYMY CDECLTPLSVPAVFEVLDAATRYMLSGLRKQCSNALMENAEEIDIFFLLE LGRMYDLPRLENFVMERMADILEEVVWTDEFLEMVRKSAATVDKREEIDS IPVVDEIRFFVYRMHKFDRNGELERKLGLINQLLEKLGLGS* back to topmRNA from alignment at chr5:536096..538202- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G01970.1 ID=NO05G01970.1|Name=NO05G01970.1|organism=Nannochloropsis oceanica|type=mRNA|length=2107bp|location=Sequence derived from alignment at chr5:536096..538202- (Nannochloropsis oceanica) ACAGCCATAGATGCCAGGTACAATTTTGGCGTAGACAAGCGCGCGGATCC
AATATCAATGAGGGCGATTGTTTGTCAAGGCCGCCGTCCAATCGCTCTCG
ACCTCCTCCCGACGACTCGGAGGTGAATACTACTAGTATTCACCAGTATA
GTACAGTACCGCAAAGTGACTACCGACTGAGTGTGCCTTCCCTGGGGTTT
CCGCTTTCTCTCGCCACAGAATGACGTCCGCCACTCCCTCCACCACTATA
GCTACCACCACATTTCCACCTCACCTCGATATTTGGCGTGCCGCCAGGGA
AGGAGATTTACCCTTGCTCTCGTACCTGGTGGAAACAAAAGGGCACAATA
TCAATAGGATAAACGAGGTCAACGCTTCTCCATTGTACTACGCAGCGCTT
TGCGGCCATGTGGCGTGCGTAGAGTATATGTTGGGGATGGGGGCTGTCGC
GGACGAAGGCGACTTTATGGGGGAACGATGCTTTTATGCCGCGCTTAATG
ACCCACTCCGGCGCTTGTTGAGACAGAGCAAAATGACACGCGCACACCGC
GAACCATTTTTGGAGTGCCTACGATTGCTTTTCGAGCAAAAGGATGGATT
ATGGCCTGATGTGAGCTTTCATTACAACACCTCTAGCAACAGCAGGAACA
AAAGTAACACCACGATTGAAATCAGTAGTGGCAGCAGCAGGGAGAACTCT
GGTCGTGCATTTTGGCAATGCCACCAAGTCGTTCTTCGTACCCGCTGCGA
GTTTTTTGCCCGCCAATTCAAACAAGGGAAATGGAAACGCTGCCGGAGGG
GTAAGCACATATCTCCACCTTTCTCCTCTTTTTCATCTATCGCCGTGCTG
CATTCCCAAGAGGCATTTGCCTGCGTGTTGCAGTATTTATACACGGCGCG
GTTGGAATTGCCATTATATTTACTGAGGGATTGTGTGAAGCTCAGTCATT
TGCTGCGACTGACTGATTTGAAAGAAGAACTTCAGAAAAAAGTAATCGAA
TGCGCAATTAGAGAGGAGGAGGAGGAGGAACAGAGGGCCATGGGTGTGGG
AGGTGGATCCAGTCGCCGTCACTTGCTCAAGCAACAGCAGCAGCGACAAA
AAGTATTGATTATCGAGCCAAGAAAAGAGGCGGTAGTTGAGCACTTCAAG
GCGCTAGCCCGGGAGGTTGTGACGAGGTTCCCTGACGATGCTGACTTTGT
CATTTTCACGGCGGACGGGAAGAGTTTCGCATTGCACCGGGTAATATTGT
GTGCGCGGAGTCAATATTTTAGGACCATGCTCAAGTCAGGTTTTGCGGAG
GGGCAAGGAGGAGGAGGAGGAGGAGGGGAAGCGGTTCCTGGTGCTGGTGC
TGGTGTTGATGCTGGTGCTGGTTCGGTGGAGGAGGGAATAGGTGGGAGGA
GGAAAGCGAGTAGTATCGCCAGCACGGAGGATGGGAAGGAGGAGGGAGCG
GAGGAGGAGGGAGCGGAGGAGGAGGGAGCGGAGGAGGAGGATGCGAGCAG
CGGGGCGCTTCTCTCCATCCATCTCTCCATTTCGTCTGAGGCCTTGCGGA
AGGTACTGGAGTATATGTATTGCGATGAGTGTTTGACCCCTCTTTCTGTC
CCCGCTGTCTTCGAGGTTCTCGACGCTGCAACTCGCTACATGCTATCTGG
TCTGAGGAAGCAGTGCAGCAACGCTCTAATGGAAAACGCCGAAGAAATCG
ACATCTTTTTCTTGTTGGAGTTGGGGAGAATGTACGACTTGCCACGCCTT
GAAAACTTTGTGATGGAACGAATGGCAGATATATTGGAGGAGGTGGTGTG
GACGGATGAGTTTTTGGAAATGGTTAGGAAGAGTGCAGCGACGGTGGACA
AAAGAGAGGAGATTGATTCTATTCCAGTGGTGGATGAGATACGGTTTTTT
GTGTATCGCATGCACAAGTTTGACAGGAACGGGGAGCTGGAAAGGAAATT
GGGGTTGATCAATCAGCTGTTGGAGAAACTGGGATTGGGTTCGTAATTAT
AAAAGAATGGTAGGAGGGAAGGAGAGGCGAGGGATTAGAGAAGATTAGTA
GATAAGATGTGAAAATGAAAATGTATTTGACAAGCGAGAGAGAACTGGGA
AGAAATA back to topCoding sequence (CDS) from alignment at chr5:536096..538202- >NO05G01970.1 ID=NO05G01970.1|Name=NO05G01970.1|organism=Nannochloropsis oceanica|type=CDS|length=1776bp|location=Sequence derived from alignment at chr5:536096..538202- (Nannochloropsis oceanica) ATGACGTCCGCCACTCCCTCCACCACTATAGCTACCACCACATTTCCACC TCACCTCGATATTTGGCGTGCCGCCAGGGAAGGAGATTTACCCTTGCTCT CGTACCTGGTGGAAACAAAAGGGCACAATATCAATAGGATAAACGAGGTC AACGCTTCTCCATTGTACTACGCAGCGCTTTGCGGCCATGTGGCGTGCGT AGAGTATATGTTGGGGATGGGGGCTGTCGCGGACGAAGGCGACTTTATGG GGGAACGATGCTTTTATGCCGCGCTTAATGACCCACTCCGGCGCTTGTTG AGACAGAGCAAAATGACACGCGCACACCGCGAACCATTTTTGGAGTGCCT ACGATTGCTTTTCGAGCAAAAGGATGGATTATGGCCTGATGTGAGCTTTC ATTACAACACCTCTAGCAACAGCAGGAACAAAAGTAACACCACGATTGAA ATCAGTAGTGGCAGCAGCAGGGAGAACTCTGGTCGTGCATTTTGGCAATG CCACCAAGTCGTTCTTCGTACCCGCTGCGAGTTTTTTGCCCGCCAATTCA AACAAGGGAAATGGAAACGCTGCCGGAGGGGTAAGCACATATCTCCACCT TTCTCCTCTTTTTCATCTATCGCCGTGCTGCATTCCCAAGAGGCATTTGC CTGCGTGTTGCAGTATTTATACACGGCGCGGTTGGAATTGCCATTATATT TACTGAGGGATTGTGTGAAGCTCAGTCATTTGCTGCGACTGACTGATTTG AAAGAAGAACTTCAGAAAAAAGTAATCGAATGCGCAATTAGAGAGGAGGA GGAGGAGGAACAGAGGGCCATGGGTGTGGGAGGTGGATCCAGTCGCCGTC ACTTGCTCAAGCAACAGCAGCAGCGACAAAAAGTATTGATTATCGAGCCA AGAAAAGAGGCGGTAGTTGAGCACTTCAAGGCGCTAGCCCGGGAGGTTGT GACGAGGTTCCCTGACGATGCTGACTTTGTCATTTTCACGGCGGACGGGA AGAGTTTCGCATTGCACCGGGTAATATTGTGTGCGCGGAGTCAATATTTT AGGACCATGCTCAAGTCAGGTTTTGCGGAGGGGCAAGGAGGAGGAGGAGG AGGAGGGGAAGCGGTTCCTGGTGCTGGTGCTGGTGTTGATGCTGGTGCTG GTTCGGTGGAGGAGGGAATAGGTGGGAGGAGGAAAGCGAGTAGTATCGCC AGCACGGAGGATGGGAAGGAGGAGGGAGCGGAGGAGGAGGGAGCGGAGGA GGAGGGAGCGGAGGAGGAGGATGCGAGCAGCGGGGCGCTTCTCTCCATCC ATCTCTCCATTTCGTCTGAGGCCTTGCGGAAGGTACTGGAGTATATGTAT TGCGATGAGTGTTTGACCCCTCTTTCTGTCCCCGCTGTCTTCGAGGTTCT CGACGCTGCAACTCGCTACATGCTATCTGGTCTGAGGAAGCAGTGCAGCA ACGCTCTAATGGAAAACGCCGAAGAAATCGACATCTTTTTCTTGTTGGAG TTGGGGAGAATGTACGACTTGCCACGCCTTGAAAACTTTGTGATGGAACG AATGGCAGATATATTGGAGGAGGTGGTGTGGACGGATGAGTTTTTGGAAA TGGTTAGGAAGAGTGCAGCGACGGTGGACAAAAGAGAGGAGATTGATTCT ATTCCAGTGGTGGATGAGATACGGTTTTTTGTGTATCGCATGCACAAGTT TGACAGGAACGGGGAGCTGGAAAGGAAATTGGGGTTGATCAATCAGCTGT TGGAGAAACTGGGATTGGGTTCGTAA back to top
|