NO05G01910.1, NO05G01910.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G01910.1
Unique NameNO05G01910.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1180
Alignment locationchr5:522448..523627 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:522448..523627 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO05G01910.1 vs.
Match: EWM28175.1 (alkylated dna repair protein alkb-like protein [Nannochloropsis gaditana])

HSP 1 Score: 402.5 bits (1033), Expect = 1.300e-108
Identity = 206/347 (59.37%), Postives = 251/347 (72.33%), Query Frame = 0
Query:    1 MPYCPSPQPSNTLCLLGVGAG----QQQPLETCLRSLFPTATA---VDVKTTKSFVCFATQQTAEDVLKQWQKQILPLGLSQHPVKITFGRFYEAKSNPQPEDVQADPITGAPFPDAHLPPGLQILPFLSEAEEAALLALVDSAEWDTVQVFRRTQHYGAAAIDFKTRKLGLSAPVAPIPSICQALLNRIRKQQEALGVSWSSGPLAKEEFPCAERDQMTVNEYEPGSGIANHIDVHSLFEDGFLIVSLGSACVMDFRKQRRRQAGDGLEEGEVDARCSLLLPRRSLLVLQGEARYAWSHGLASRKTDKVNGQLVARGRRVSLSFRRMRKGSPLVCDCSFPEACDSR 341
            MPYCPS Q S+TLC LGVG       +   ET  RSLF T  A   V +   K+++ F + +TAE V ++WQ ++LP  LS+HPV + FGR YEAK NP+PE+V  DP+     P   LP GLQ+  FL+EAEE++LL L+DS +WD   V RRTQHYGAAAIDF+++ L    P  PIP  C+ LL R R+QQ+A GV+W SGPLA  +  C  RDQMTVNEY+PG GIA HID HSLFEDG LI+SLGSA VMDFR+QR     + L++GE   RCSLLLPRRSLLVLQGEARY W+HGLASRKTDKVNG+LV+RGRRVSLSFRR+R G+P +C+C FP +CD R
Sbjct:    1 MPYCPSVQSSDTLCFLGVGMKGDDVARSEWETRFRSLFSTDAAIIAVQILPGKTYMTFDSIKTAEKVRQEWQGRVLPRRLSRHPVTVLFGRAYEAKINPEPENVIVDPLADTLTPATCLPKGLQLFMFLNEAEESSLLTLLDSKQWDKSGVTRRTQHYGAAAIDFRSKSLDTRRPTVPIPIQCRDLLARARRQQQACGVAWPSGPLADTDASCLGRDQMTVNEYQPGDGIAAHIDAHSLFEDGLLIMSLGSAYVMDFREQRH----NDLQDGEAGPRCSLLLPRRSLLVLQGEARYNWTHGLASRKTDKVNGRLVSRGRRVSLSFRRLRNGNPPLCECLFPASCDKR 343          
The following BLAST results are available for this feature:
BLAST of NO05G01910.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28175.11.300e-10859.37alkylated dna repair protein alkb-like protein [Na... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G01910NO05G01910Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G01910.1NO05G01910.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G01910.1.cds1NO05G01910.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G01910.1 ID=NO05G01910.1|Name=NO05G01910.1|organism=Nannochloropsis oceanica|type=mRNA|length=1180bp
AACCACAGGCGTAGAGGATGCCATATTGTCCATCTCCGCAGCCCTCTAAC
ACGCTTTGCCTCTTGGGCGTGGGTGCGGGTCAACAACAGCCTTTAGAGAC
CTGTCTCCGCTCCCTCTTTCCAACCGCAACGGCCGTCGACGTGAAAACTA
CCAAGAGCTTTGTCTGCTTTGCGACTCAGCAGACTGCTGAAGATGTCCTG
AAACAATGGCAGAAACAGATACTTCCACTTGGGCTTTCGCAGCACCCAGT
TAAAATCACGTTCGGACGATTTTACGAGGCTAAGTCTAATCCACAGCCGG
AAGACGTGCAAGCGGACCCTATCACAGGTGCCCCTTTCCCCGATGCCCAC
CTCCCACCCGGCCTGCAAATACTCCCATTTTTATCCGAAGCAGAGGAGGC
GGCACTCCTAGCTCTAGTAGATAGCGCGGAATGGGATACCGTCCAAGTCT
TTCGAAGGACGCAGCACTATGGTGCAGCGGCCATTGATTTCAAAACCCGG
AAACTTGGGCTGTCTGCGCCCGTCGCTCCCATTCCTTCTATATGCCAAGC
CTTACTTAATCGTATTCGAAAGCAACAGGAGGCATTGGGTGTGTCCTGGT
CGAGTGGACCGTTGGCAAAGGAGGAGTTTCCTTGTGCGGAGAGAGATCAG
ATGACAGTGAATGAATATGAGCCGGGATCGGGCATAGCTAATCATATCGA
TGTGCACTCGCTATTCGAGGACGGCTTTTTGATTGTATCTTTGGGGAGTG
CTTGTGTTATGGATTTTAGGAAGCAAAGAAGGAGACAGGCCGGTGATGGA
CTGGAAGAGGGAGAAGTGGATGCACGCTGCTCTCTACTGCTGCCACGAAG
GTCTTTGCTTGTGCTGCAGGGAGAGGCCCGGTACGCATGGAGTCATGGAT
TGGCGAGTCGGAAAACAGACAAGGTAAATGGTCAGCTCGTCGCGCGGGGC
CGCCGCGTCTCACTTAGTTTTCGGAGGATGCGTAAGGGAAGCCCGCTAGT
GTGTGATTGTTCTTTCCCCGAGGCCTGCGATAGTCGGGCGGCCACTGCTG
GGGCCTGTGGCAGCTATACCAATTGAGAGAGGGGACTTGGATCGCACGCG
TGAGATAGTGTACAGAGAAATATATTCACGGAATGGCTGAATTGAGACGA
GGACGACGAGTGACAGAAGCAAAGACGACA
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protein sequence of NO05G01910.1

>NO05G01910.1-protein ID=NO05G01910.1-protein|Name=NO05G01910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=353bp
MPYCPSPQPSNTLCLLGVGAGQQQPLETCLRSLFPTATAVDVKTTKSFVC
FATQQTAEDVLKQWQKQILPLGLSQHPVKITFGRFYEAKSNPQPEDVQAD
PITGAPFPDAHLPPGLQILPFLSEAEEAALLALVDSAEWDTVQVFRRTQH
YGAAAIDFKTRKLGLSAPVAPIPSICQALLNRIRKQQEALGVSWSSGPLA
KEEFPCAERDQMTVNEYEPGSGIANHIDVHSLFEDGFLIVSLGSACVMDF
RKQRRRQAGDGLEEGEVDARCSLLLPRRSLLVLQGEARYAWSHGLASRKT
DKVNGQLVARGRRVSLSFRRMRKGSPLVCDCSFPEACDSRAATAGACGSY
TN*
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mRNA from alignment at chr5:522448..523627-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G01910.1 ID=NO05G01910.1|Name=NO05G01910.1|organism=Nannochloropsis oceanica|type=mRNA|length=1180bp|location=Sequence derived from alignment at chr5:522448..523627- (Nannochloropsis oceanica)
AACCACAGGCGTAGAGGATGCCATATTGTCCATCTCCGCAGCCCTCTAAC ACGCTTTGCCTCTTGGGCGTGGGTGCGGGTCAACAACAGCCTTTAGAGAC CTGTCTCCGCTCCCTCTTTCCAACCGCAACGGCCGTCGACGTGAAAACTA CCAAGAGCTTTGTCTGCTTTGCGACTCAGCAGACTGCTGAAGATGTCCTG AAACAATGGCAGAAACAGATACTTCCACTTGGGCTTTCGCAGCACCCAGT TAAAATCACGTTCGGACGATTTTACGAGGCTAAGTCTAATCCACAGCCGG AAGACGTGCAAGCGGACCCTATCACAGGTGCCCCTTTCCCCGATGCCCAC CTCCCACCCGGCCTGCAAATACTCCCATTTTTATCCGAAGCAGAGGAGGC GGCACTCCTAGCTCTAGTAGATAGCGCGGAATGGGATACCGTCCAAGTCT TTCGAAGGACGCAGCACTATGGTGCAGCGGCCATTGATTTCAAAACCCGG AAACTTGGGCTGTCTGCGCCCGTCGCTCCCATTCCTTCTATATGCCAAGC CTTACTTAATCGTATTCGAAAGCAACAGGAGGCATTGGGTGTGTCCTGGT CGAGTGGACCGTTGGCAAAGGAGGAGTTTCCTTGTGCGGAGAGAGATCAG ATGACAGTGAATGAATATGAGCCGGGATCGGGCATAGCTAATCATATCGA TGTGCACTCGCTATTCGAGGACGGCTTTTTGATTGTATCTTTGGGGAGTG CTTGTGTTATGGATTTTAGGAAGCAAAGAAGGAGACAGGCCGGTGATGGA CTGGAAGAGGGAGAAGTGGATGCACGCTGCTCTCTACTGCTGCCACGAAG GTCTTTGCTTGTGCTGCAGGGAGAGGCCCGGTACGCATGGAGTCATGGAT TGGCGAGTCGGAAAACAGACAAGGTAAATGGTCAGCTCGTCGCGCGGGGC CGCCGCGTCTCACTTAGTTTTCGGAGGATGCGTAAGGGAAGCCCGCTAGT GTGTGATTGTTCTTTCCCCGAGGCCTGCGATAGTCGGGCGGCCACTGCTG GGGCCTGTGGCAGCTATACCAATTGAGAGAGGGGACTTGGATCGCACGCG TGAGATAGTGTACAGAGAAATATATTCACGGAATGGCTGAATTGAGACGA GGACGACGAGTGACAGAAGCAAAGACGACA
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Coding sequence (CDS) from alignment at chr5:522448..523627-

>NO05G01910.1 ID=NO05G01910.1|Name=NO05G01910.1|organism=Nannochloropsis oceanica|type=CDS|length=1059bp|location=Sequence derived from alignment at chr5:522448..523627- (Nannochloropsis oceanica)
ATGCCATATTGTCCATCTCCGCAGCCCTCTAACACGCTTTGCCTCTTGGG
CGTGGGTGCGGGTCAACAACAGCCTTTAGAGACCTGTCTCCGCTCCCTCT
TTCCAACCGCAACGGCCGTCGACGTGAAAACTACCAAGAGCTTTGTCTGC
TTTGCGACTCAGCAGACTGCTGAAGATGTCCTGAAACAATGGCAGAAACA
GATACTTCCACTTGGGCTTTCGCAGCACCCAGTTAAAATCACGTTCGGAC
GATTTTACGAGGCTAAGTCTAATCCACAGCCGGAAGACGTGCAAGCGGAC
CCTATCACAGGTGCCCCTTTCCCCGATGCCCACCTCCCACCCGGCCTGCA
AATACTCCCATTTTTATCCGAAGCAGAGGAGGCGGCACTCCTAGCTCTAG
TAGATAGCGCGGAATGGGATACCGTCCAAGTCTTTCGAAGGACGCAGCAC
TATGGTGCAGCGGCCATTGATTTCAAAACCCGGAAACTTGGGCTGTCTGC
GCCCGTCGCTCCCATTCCTTCTATATGCCAAGCCTTACTTAATCGTATTC
GAAAGCAACAGGAGGCATTGGGTGTGTCCTGGTCGAGTGGACCGTTGGCA
AAGGAGGAGTTTCCTTGTGCGGAGAGAGATCAGATGACAGTGAATGAATA
TGAGCCGGGATCGGGCATAGCTAATCATATCGATGTGCACTCGCTATTCG
AGGACGGCTTTTTGATTGTATCTTTGGGGAGTGCTTGTGTTATGGATTTT
AGGAAGCAAAGAAGGAGACAGGCCGGTGATGGACTGGAAGAGGGAGAAGT
GGATGCACGCTGCTCTCTACTGCTGCCACGAAGGTCTTTGCTTGTGCTGC
AGGGAGAGGCCCGGTACGCATGGAGTCATGGATTGGCGAGTCGGAAAACA
GACAAGGTAAATGGTCAGCTCGTCGCGCGGGGCCGCCGCGTCTCACTTAG
TTTTCGGAGGATGCGTAAGGGAAGCCCGCTAGTGTGTGATTGTTCTTTCC
CCGAGGCCTGCGATAGTCGGGCGGCCACTGCTGGGGCCTGTGGCAGCTAT
ACCAATTGA
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Synonyms
Publications