NO05G01870.1, NO05G01870.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G01870.1
Unique NameNO05G01870.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1225
Alignment locationchr5:512792..514107 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:512792..514107 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO05G01870.1 vs.
Match: EWM28242.1 (hypothetical protein Naga_100004g112 [Nannochloropsis gaditana])

HSP 1 Score: 159.1 bits (401), Expect = 2.900e-35
Identity = 120/319 (37.62%), Postives = 168/319 (52.66%), Query Frame = 0
Query:   43 MESIVEKLKVLDLKGAGRPLSCPPPRLDRLSFVVKQPRQHALFLTVASWLCNRLKG-ESDPTHCHT--TVEALVADLSNLQLCGMSTGEEMAALKLGYGKDVCRLLDILCNAALAKIGFVWQAPVYVPSEETLNKAESEEAAAAPEKNGSTSMLSFTTLQPEAKLAAKLTEAKESKSCTSPDVAEGKSWDPKLPLKHDEESESKEQRCRERVGQVKVQINEAENAHQIKQGRVDTLKIEFGRLQDRCDRLQREEEEALRWEHPSGEEGSTWQTGGGSGGKGGERMAYDSPMVMMRRGLEKVNEEIKAFDVRIGVMQHIL 359
            MESI EKLK+LD +     +S  PP +DRLSFVV+QP Q  LFL V  WL  RL G +SD ++     +VE LV+D+S  ++      E M A +LG GK VCR+LD LC+  LAK+GF WQ PV+    E   KA+S+E  A       +  +      P A         KE K       AE K+ D      HD +SESKEQR + RV Q+K QI + +N  Q++  R+  LK +  +L +RC RLQ++E EAL  ++P G   S             + +     +V ++    K+ EEI A   + G+++H L
Sbjct:    1 MESIAEKLKILDSRIGTSSMS--PPSVDRLSFVVQQPTQRELFLKVGFWLIERLDGTQSDFSYAQRRKSVEDLVSDISERKILQQCGEEAMRAFELGRGKAVCRVLDSLCDLVLAKVGFRWQRPVHTICREIPLKADSKETEAVRRSIKESFPMLLHLQDPSADDQQNTNSVKECK-------AERKNSDHTSNRLHD-QSESKEQRYKARVLQLKNQIIDQQNVCQLQSRRIQVLKNDLRKLNERCVRLQQKEREALS-DNPLGRMSSP------EAIADAKDVTCTPLVVRLKIADMKMKEEIPALKFKTGIIRHSL 302          
The following BLAST results are available for this feature:
BLAST of NO05G01870.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28242.12.900e-3537.62hypothetical protein Naga_100004g112 [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G01870NO05G01870Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G01870.1NO05G01870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G01870.1.cds1NO05G01870.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G01870.1.cds2NO05G01870.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G01870.1 ID=NO05G01870.1|Name=NO05G01870.1|organism=Nannochloropsis oceanica|type=mRNA|length=1225bp
ATGTCACCGCAGCCGCTACAGCTACAGACCTCCTCTGCGTCATCGACCAC
ATCTGCTGCTGCTGATGCTGCTGCTTCTGTCCCAGCGCAAGACTGGAGAA
GAGTCGAGGGAACGCTTTTTCTTATGATGGAGTCCATCGTCGAGAAGCTA
AAAGTGCTCGATTTAAAGGGTGCCGGTAGACCCCTGTCGTGTCCTCCTCC
TCGCCTGGACAGGTTGTCCTTCGTAGTAAAGCAGCCGCGACAGCACGCGC
TGTTTCTCACGGTAGCATCATGGCTGTGCAATCGATTGAAGGGTGAATCC
GATCCTACACACTGCCACACCACCGTTGAGGCACTCGTCGCCGACCTCAG
CAACCTGCAGCTTTGCGGCATGTCAACGGGAGAAGAGATGGCTGCACTAA
AGCTAGGATACGGAAAGGACGTATGCCGATTGTTGGACATTCTTTGCAAT
GCTGCTCTGGCTAAAATTGGATTTGTATGGCAAGCTCCAGTGTACGTGCC
ATCGGAAGAGACTTTGAATAAGGCTGAGAGCGAGGAGGCAGCAGCAGCAC
CCGAAAAGAACGGATCCACAAGCATGTTGTCTTTCACGACTCTCCAACCA
GAAGCTAAATTGGCAGCTAAATTGACAGAAGCCAAAGAATCCAAGAGTTG
CACAAGTCCAGATGTCGCCGAGGGCAAGAGCTGGGACCCCAAACTCCCAC
TGAAGCACGACGAGGAGAGTGAAAGCAAAGAGCAGCGGTGCAGGGAGCGA
GTGGGACAAGTCAAGGTTCAAATTAATGAAGCTGAAAACGCGCACCAGAT
TAAACAAGGACGGGTGGACACTCTCAAGATAGAGTTCGGGCGGCTCCAAG
ATCGATGCGACCGTTTGCAGCGCGAAGAAGAGGAGGCTCTCCGATGGGAA
CACCCATCAGGAGAGGAAGGCTCGACGTGGCAGACAGGAGGAGGAAGTGG
AGGAAAGGGAGGAGAAAGAATGGCATATGACTCTCCAATGGTAATGATGA
GACGAGGCTTGGAAAAGGTGAATGAAGAAATTAAGGCATTTGACGTACGA
ATAGGGGTGATGCAGCACATACTGCTGCATCGAGCTGGCCGCTTGAGGGC
ACTGGAGGAGGAAGAGGAGGAGGACGAGGAGGAGGAGACAAGGAGGGGAA
GAGAGAATGAGCAGGCTATGAGGCTATATTGAGCGGGAAAAAGGAGCAAA
CGTCTCCAAGCGAGTGTTTGTGCTT
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protein sequence of NO05G01870.1

>NO05G01870.1-protein ID=NO05G01870.1-protein|Name=NO05G01870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=394bp
MSPQPLQLQTSSASSTTSAAADAAASVPAQDWRRVEGTLFLMMESIVEKL
KVLDLKGAGRPLSCPPPRLDRLSFVVKQPRQHALFLTVASWLCNRLKGES
DPTHCHTTVEALVADLSNLQLCGMSTGEEMAALKLGYGKDVCRLLDILCN
AALAKIGFVWQAPVYVPSEETLNKAESEEAAAAPEKNGSTSMLSFTTLQP
EAKLAAKLTEAKESKSCTSPDVAEGKSWDPKLPLKHDEESESKEQRCRER
VGQVKVQINEAENAHQIKQGRVDTLKIEFGRLQDRCDRLQREEEEALRWE
HPSGEEGSTWQTGGGSGGKGGERMAYDSPMVMMRRGLEKVNEEIKAFDVR
IGVMQHILLHRAGRLRALEEEEEEDEEEETRRGRENEQAMRLY*
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mRNA from alignment at chr5:512792..514107-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G01870.1 ID=NO05G01870.1|Name=NO05G01870.1|organism=Nannochloropsis oceanica|type=mRNA|length=1316bp|location=Sequence derived from alignment at chr5:512792..514107- (Nannochloropsis oceanica)
ATGTCACCGCAGCCGCTACAGCTACAGACCTCCTCTGCGTCATCGACCAC ATCTGCTGCTGCTGATGCTGCTGCTTCTGTCCCAGCGCAAGACTGGAGAA GAGTCGAGGTAGGGGTACACTTGATGCAGGGCTACGCGGCAAAGAAAAAA TGTACCAGTAGTCGATAACAATAAATTTACCACATTACAAAACCATCAGG GAACGCTTTTTCTTATGATGGAGTCCATCGTCGAGAAGCTAAAAGTGCTC GATTTAAAGGGTGCCGGTAGACCCCTGTCGTGTCCTCCTCCTCGCCTGGA CAGGTTGTCCTTCGTAGTAAAGCAGCCGCGACAGCACGCGCTGTTTCTCA CGGTAGCATCATGGCTGTGCAATCGATTGAAGGGTGAATCCGATCCTACA CACTGCCACACCACCGTTGAGGCACTCGTCGCCGACCTCAGCAACCTGCA GCTTTGCGGCATGTCAACGGGAGAAGAGATGGCTGCACTAAAGCTAGGAT ACGGAAAGGACGTATGCCGATTGTTGGACATTCTTTGCAATGCTGCTCTG GCTAAAATTGGATTTGTATGGCAAGCTCCAGTGTACGTGCCATCGGAAGA GACTTTGAATAAGGCTGAGAGCGAGGAGGCAGCAGCAGCACCCGAAAAGA ACGGATCCACAAGCATGTTGTCTTTCACGACTCTCCAACCAGAAGCTAAA TTGGCAGCTAAATTGACAGAAGCCAAAGAATCCAAGAGTTGCACAAGTCC AGATGTCGCCGAGGGCAAGAGCTGGGACCCCAAACTCCCACTGAAGCACG ACGAGGAGAGTGAAAGCAAAGAGCAGCGGTGCAGGGAGCGAGTGGGACAA GTCAAGGTTCAAATTAATGAAGCTGAAAACGCGCACCAGATTAAACAAGG ACGGGTGGACACTCTCAAGATAGAGTTCGGGCGGCTCCAAGATCGATGCG ACCGTTTGCAGCGCGAAGAAGAGGAGGCTCTCCGATGGGAACACCCATCA GGAGAGGAAGGCTCGACGTGGCAGACAGGAGGAGGAAGTGGAGGAAAGGG AGGAGAAAGAATGGCATATGACTCTCCAATGGTAATGATGAGACGAGGCT TGGAAAAGGTGAATGAAGAAATTAAGGCATTTGACGTACGAATAGGGGTG ATGCAGCACATACTGCTGCATCGAGCTGGCCGCTTGAGGGCACTGGAGGA GGAAGAGGAGGAGGACGAGGAGGAGGAGACAAGGAGGGGAAGAGAGAATG AGCAGGCTATGAGGCTATATTGAGCGGGAAAAAGGAGCAAACGTCTCCAA GCGAGTGTTTGTGCTT
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Coding sequence (CDS) from alignment at chr5:512792..514107-

>NO05G01870.1 ID=NO05G01870.1|Name=NO05G01870.1|organism=Nannochloropsis oceanica|type=CDS|length=1182bp|location=Sequence derived from alignment at chr5:512792..514107- (Nannochloropsis oceanica)
ATGTCACCGCAGCCGCTACAGCTACAGACCTCCTCTGCGTCATCGACCAC
ATCTGCTGCTGCTGATGCTGCTGCTTCTGTCCCAGCGCAAGACTGGAGAA
GAGTCGAGGGAACGCTTTTTCTTATGATGGAGTCCATCGTCGAGAAGCTA
AAAGTGCTCGATTTAAAGGGTGCCGGTAGACCCCTGTCGTGTCCTCCTCC
TCGCCTGGACAGGTTGTCCTTCGTAGTAAAGCAGCCGCGACAGCACGCGC
TGTTTCTCACGGTAGCATCATGGCTGTGCAATCGATTGAAGGGTGAATCC
GATCCTACACACTGCCACACCACCGTTGAGGCACTCGTCGCCGACCTCAG
CAACCTGCAGCTTTGCGGCATGTCAACGGGAGAAGAGATGGCTGCACTAA
AGCTAGGATACGGAAAGGACGTATGCCGATTGTTGGACATTCTTTGCAAT
GCTGCTCTGGCTAAAATTGGATTTGTATGGCAAGCTCCAGTGTACGTGCC
ATCGGAAGAGACTTTGAATAAGGCTGAGAGCGAGGAGGCAGCAGCAGCAC
CCGAAAAGAACGGATCCACAAGCATGTTGTCTTTCACGACTCTCCAACCA
GAAGCTAAATTGGCAGCTAAATTGACAGAAGCCAAAGAATCCAAGAGTTG
CACAAGTCCAGATGTCGCCGAGGGCAAGAGCTGGGACCCCAAACTCCCAC
TGAAGCACGACGAGGAGAGTGAAAGCAAAGAGCAGCGGTGCAGGGAGCGA
GTGGGACAAGTCAAGGTTCAAATTAATGAAGCTGAAAACGCGCACCAGAT
TAAACAAGGACGGGTGGACACTCTCAAGATAGAGTTCGGGCGGCTCCAAG
ATCGATGCGACCGTTTGCAGCGCGAAGAAGAGGAGGCTCTCCGATGGGAA
CACCCATCAGGAGAGGAAGGCTCGACGTGGCAGACAGGAGGAGGAAGTGG
AGGAAAGGGAGGAGAAAGAATGGCATATGACTCTCCAATGGTAATGATGA
GACGAGGCTTGGAAAAGGTGAATGAAGAAATTAAGGCATTTGACGTACGA
ATAGGGGTGATGCAGCACATACTGCTGCATCGAGCTGGCCGCTTGAGGGC
ACTGGAGGAGGAAGAGGAGGAGGACGAGGAGGAGGAGACAAGGAGGGGAA
GAGAGAATGAGCAGGCTATGAGGCTATATTGA
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Synonyms
Publications