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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr5 | genome | chr5:512792..514107 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G01870.1 vs.
Match: EWM28242.1 (hypothetical protein Naga_100004g112 [Nannochloropsis gaditana]) HSP 1 Score: 159.1 bits (401), Expect = 2.900e-35 Identity = 120/319 (37.62%), Postives = 168/319 (52.66%), Query Frame = 0
Query: 43 MESIVEKLKVLDLKGAGRPLSCPPPRLDRLSFVVKQPRQHALFLTVASWLCNRLKG-ESDPTHCHT--TVEALVADLSNLQLCGMSTGEEMAALKLGYGKDVCRLLDILCNAALAKIGFVWQAPVYVPSEETLNKAESEEAAAAPEKNGSTSMLSFTTLQPEAKLAAKLTEAKESKSCTSPDVAEGKSWDPKLPLKHDEESESKEQRCRERVGQVKVQINEAENAHQIKQGRVDTLKIEFGRLQDRCDRLQREEEEALRWEHPSGEEGSTWQTGGGSGGKGGERMAYDSPMVMMRRGLEKVNEEIKAFDVRIGVMQHIL 359
MESI EKLK+LD + +S PP +DRLSFVV+QP Q LFL V WL RL G +SD ++ +VE LV+D+S ++ E M A +LG GK VCR+LD LC+ LAK+GF WQ PV+ E KA+S+E A + + P A KE K AE K+ D HD +SESKEQR + RV Q+K QI + +N Q++ R+ LK + +L +RC RLQ++E EAL ++P G S + + +V ++ K+ EEI A + G+++H L
Sbjct: 1 MESIAEKLKILDSRIGTSSMS--PPSVDRLSFVVQQPTQRELFLKVGFWLIERLDGTQSDFSYAQRRKSVEDLVSDISERKILQQCGEEAMRAFELGRGKAVCRVLDSLCDLVLAKVGFRWQRPVHTICREIPLKADSKETEAVRRSIKESFPMLLHLQDPSADDQQNTNSVKECK-------AERKNSDHTSNRLHD-QSESKEQRYKARVLQLKNQIIDQQNVCQLQSRRIQVLKNDLRKLNERCVRLQQKEREALS-DNPLGRMSSP------EAIADAKDVTCTPLVVRLKIADMKMKEEIPALKFKTGIIRHSL 302
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G01870.1 ID=NO05G01870.1|Name=NO05G01870.1|organism=Nannochloropsis oceanica|type=mRNA|length=1225bp ATGTCACCGCAGCCGCTACAGCTACAGACCTCCTCTGCGTCATCGACCAC ATCTGCTGCTGCTGATGCTGCTGCTTCTGTCCCAGCGCAAGACTGGAGAA GAGTCGAGGGAACGCTTTTTCTTATGATGGAGTCCATCGTCGAGAAGCTA AAAGTGCTCGATTTAAAGGGTGCCGGTAGACCCCTGTCGTGTCCTCCTCC TCGCCTGGACAGGTTGTCCTTCGTAGTAAAGCAGCCGCGACAGCACGCGC TGTTTCTCACGGTAGCATCATGGCTGTGCAATCGATTGAAGGGTGAATCC GATCCTACACACTGCCACACCACCGTTGAGGCACTCGTCGCCGACCTCAG CAACCTGCAGCTTTGCGGCATGTCAACGGGAGAAGAGATGGCTGCACTAA AGCTAGGATACGGAAAGGACGTATGCCGATTGTTGGACATTCTTTGCAAT GCTGCTCTGGCTAAAATTGGATTTGTATGGCAAGCTCCAGTGTACGTGCC ATCGGAAGAGACTTTGAATAAGGCTGAGAGCGAGGAGGCAGCAGCAGCAC CCGAAAAGAACGGATCCACAAGCATGTTGTCTTTCACGACTCTCCAACCA GAAGCTAAATTGGCAGCTAAATTGACAGAAGCCAAAGAATCCAAGAGTTG CACAAGTCCAGATGTCGCCGAGGGCAAGAGCTGGGACCCCAAACTCCCAC TGAAGCACGACGAGGAGAGTGAAAGCAAAGAGCAGCGGTGCAGGGAGCGA GTGGGACAAGTCAAGGTTCAAATTAATGAAGCTGAAAACGCGCACCAGAT TAAACAAGGACGGGTGGACACTCTCAAGATAGAGTTCGGGCGGCTCCAAG ATCGATGCGACCGTTTGCAGCGCGAAGAAGAGGAGGCTCTCCGATGGGAA CACCCATCAGGAGAGGAAGGCTCGACGTGGCAGACAGGAGGAGGAAGTGG AGGAAAGGGAGGAGAAAGAATGGCATATGACTCTCCAATGGTAATGATGA GACGAGGCTTGGAAAAGGTGAATGAAGAAATTAAGGCATTTGACGTACGA ATAGGGGTGATGCAGCACATACTGCTGCATCGAGCTGGCCGCTTGAGGGC ACTGGAGGAGGAAGAGGAGGAGGACGAGGAGGAGGAGACAAGGAGGGGAA GAGAGAATGAGCAGGCTATGAGGCTATATTGAGCGGGAAAAAGGAGCAAA CGTCTCCAAGCGAGTGTTTGTGCTT back to topprotein sequence of NO05G01870.1 >NO05G01870.1-protein ID=NO05G01870.1-protein|Name=NO05G01870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=394bp MSPQPLQLQTSSASSTTSAAADAAASVPAQDWRRVEGTLFLMMESIVEKL KVLDLKGAGRPLSCPPPRLDRLSFVVKQPRQHALFLTVASWLCNRLKGES DPTHCHTTVEALVADLSNLQLCGMSTGEEMAALKLGYGKDVCRLLDILCN AALAKIGFVWQAPVYVPSEETLNKAESEEAAAAPEKNGSTSMLSFTTLQP EAKLAAKLTEAKESKSCTSPDVAEGKSWDPKLPLKHDEESESKEQRCRER VGQVKVQINEAENAHQIKQGRVDTLKIEFGRLQDRCDRLQREEEEALRWE HPSGEEGSTWQTGGGSGGKGGERMAYDSPMVMMRRGLEKVNEEIKAFDVR IGVMQHILLHRAGRLRALEEEEEEDEEEETRRGRENEQAMRLY* back to topmRNA from alignment at chr5:512792..514107- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G01870.1 ID=NO05G01870.1|Name=NO05G01870.1|organism=Nannochloropsis oceanica|type=mRNA|length=1316bp|location=Sequence derived from alignment at chr5:512792..514107- (Nannochloropsis oceanica) ATGTCACCGCAGCCGCTACAGCTACAGACCTCCTCTGCGTCATCGACCAC
ATCTGCTGCTGCTGATGCTGCTGCTTCTGTCCCAGCGCAAGACTGGAGAA
GAGTCGAGGTAGGGGTACACTTGATGCAGGGCTACGCGGCAAAGAAAAAA
TGTACCAGTAGTCGATAACAATAAATTTACCACATTACAAAACCATCAGG
GAACGCTTTTTCTTATGATGGAGTCCATCGTCGAGAAGCTAAAAGTGCTC
GATTTAAAGGGTGCCGGTAGACCCCTGTCGTGTCCTCCTCCTCGCCTGGA
CAGGTTGTCCTTCGTAGTAAAGCAGCCGCGACAGCACGCGCTGTTTCTCA
CGGTAGCATCATGGCTGTGCAATCGATTGAAGGGTGAATCCGATCCTACA
CACTGCCACACCACCGTTGAGGCACTCGTCGCCGACCTCAGCAACCTGCA
GCTTTGCGGCATGTCAACGGGAGAAGAGATGGCTGCACTAAAGCTAGGAT
ACGGAAAGGACGTATGCCGATTGTTGGACATTCTTTGCAATGCTGCTCTG
GCTAAAATTGGATTTGTATGGCAAGCTCCAGTGTACGTGCCATCGGAAGA
GACTTTGAATAAGGCTGAGAGCGAGGAGGCAGCAGCAGCACCCGAAAAGA
ACGGATCCACAAGCATGTTGTCTTTCACGACTCTCCAACCAGAAGCTAAA
TTGGCAGCTAAATTGACAGAAGCCAAAGAATCCAAGAGTTGCACAAGTCC
AGATGTCGCCGAGGGCAAGAGCTGGGACCCCAAACTCCCACTGAAGCACG
ACGAGGAGAGTGAAAGCAAAGAGCAGCGGTGCAGGGAGCGAGTGGGACAA
GTCAAGGTTCAAATTAATGAAGCTGAAAACGCGCACCAGATTAAACAAGG
ACGGGTGGACACTCTCAAGATAGAGTTCGGGCGGCTCCAAGATCGATGCG
ACCGTTTGCAGCGCGAAGAAGAGGAGGCTCTCCGATGGGAACACCCATCA
GGAGAGGAAGGCTCGACGTGGCAGACAGGAGGAGGAAGTGGAGGAAAGGG
AGGAGAAAGAATGGCATATGACTCTCCAATGGTAATGATGAGACGAGGCT
TGGAAAAGGTGAATGAAGAAATTAAGGCATTTGACGTACGAATAGGGGTG
ATGCAGCACATACTGCTGCATCGAGCTGGCCGCTTGAGGGCACTGGAGGA
GGAAGAGGAGGAGGACGAGGAGGAGGAGACAAGGAGGGGAAGAGAGAATG
AGCAGGCTATGAGGCTATATTGAGCGGGAAAAAGGAGCAAACGTCTCCAA
GCGAGTGTTTGTGCTT back to topCoding sequence (CDS) from alignment at chr5:512792..514107- >NO05G01870.1 ID=NO05G01870.1|Name=NO05G01870.1|organism=Nannochloropsis oceanica|type=CDS|length=1182bp|location=Sequence derived from alignment at chr5:512792..514107- (Nannochloropsis oceanica) ATGTCACCGCAGCCGCTACAGCTACAGACCTCCTCTGCGTCATCGACCAC ATCTGCTGCTGCTGATGCTGCTGCTTCTGTCCCAGCGCAAGACTGGAGAA GAGTCGAGGGAACGCTTTTTCTTATGATGGAGTCCATCGTCGAGAAGCTA AAAGTGCTCGATTTAAAGGGTGCCGGTAGACCCCTGTCGTGTCCTCCTCC TCGCCTGGACAGGTTGTCCTTCGTAGTAAAGCAGCCGCGACAGCACGCGC TGTTTCTCACGGTAGCATCATGGCTGTGCAATCGATTGAAGGGTGAATCC GATCCTACACACTGCCACACCACCGTTGAGGCACTCGTCGCCGACCTCAG CAACCTGCAGCTTTGCGGCATGTCAACGGGAGAAGAGATGGCTGCACTAA AGCTAGGATACGGAAAGGACGTATGCCGATTGTTGGACATTCTTTGCAAT GCTGCTCTGGCTAAAATTGGATTTGTATGGCAAGCTCCAGTGTACGTGCC ATCGGAAGAGACTTTGAATAAGGCTGAGAGCGAGGAGGCAGCAGCAGCAC CCGAAAAGAACGGATCCACAAGCATGTTGTCTTTCACGACTCTCCAACCA GAAGCTAAATTGGCAGCTAAATTGACAGAAGCCAAAGAATCCAAGAGTTG CACAAGTCCAGATGTCGCCGAGGGCAAGAGCTGGGACCCCAAACTCCCAC TGAAGCACGACGAGGAGAGTGAAAGCAAAGAGCAGCGGTGCAGGGAGCGA GTGGGACAAGTCAAGGTTCAAATTAATGAAGCTGAAAACGCGCACCAGAT TAAACAAGGACGGGTGGACACTCTCAAGATAGAGTTCGGGCGGCTCCAAG ATCGATGCGACCGTTTGCAGCGCGAAGAAGAGGAGGCTCTCCGATGGGAA CACCCATCAGGAGAGGAAGGCTCGACGTGGCAGACAGGAGGAGGAAGTGG AGGAAAGGGAGGAGAAAGAATGGCATATGACTCTCCAATGGTAATGATGA GACGAGGCTTGGAAAAGGTGAATGAAGAAATTAAGGCATTTGACGTACGA ATAGGGGTGATGCAGCACATACTGCTGCATCGAGCTGGCCGCTTGAGGGC ACTGGAGGAGGAAGAGGAGGAGGACGAGGAGGAGGAGACAAGGAGGGGAA GAGAGAATGAGCAGGCTATGAGGCTATATTGA back to top
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