NO05G01830.1, NO05G01830.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G01830.1
Unique NameNO05G01830.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1431
Alignment locationchr5:500628..502181 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:500628..502181 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO05G01830.1 vs.
Match: EWM28251.1 (sam-dependent methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 522.3 bits (1344), Expect = 1.600e-144
Identity = 276/464 (59.48%), Postives = 342/464 (73.71%), Query Frame = 0 
Query:    4 TPHENMACKLETSLLSASPNFVRFTLTNNPAPPKDASNPVIEKLQARLVTSGSDKSKPPTFQIVYTHPTSTTTKNYALTDAPAVLRGHLASTGPLKAARLFTTAEDWVLEVRKNTGRARLYRNKATFAEVEVGTHDRQKKRRLALVSLTEEEKEGGKEEGNGDGKEMGEAARVMLSSSISMTKNSFLHEYGILGPGGRPKAGMKDKFRQIEKFVEILASQLKEGSDNESTAMSAADLQKKTLKLLDAGCGKGYLTFAAYEYLTSQGYRVQARGVDVTQDVVDKANAVADRLGYSSGGGLSFSRGTIAEATAKVTAGQERYDVVIALHACDTATDDCLYLGVQTEARVILASPCCHKEVRREMKKAKLTAAAAEPLQPVLKHGILMERQAEIVTDSIRVLALQLSGYRAQVFEWINDEETSKNLMLAATKRQRPLEAKKLRAFQGQLRELMNMFGLDTQHLLGLL 468
            TPHE +A KL  SL+     FVRF LTN PAP +D++ PVI+KLQAR V++ +  + P   Q+VYTHPTSTTTKNY LT+A  +L  HL+ TGPLKAARLFTT EDWVLE  +   +AR Y+NK TF  +++  HDR+KKRRL L             E +G+G+ + +  + +  SS S  K+SFL  YGILG  GRPKAGMK+KFRQIEKFVEILAS L+  +D   +         K L +LDAGCGKGYLTFAAYEYLTS+G++ Q RGV++ +D+VD+ANAVA +LGY+   GL+F RGTIA+ TA      ERYDVVIALHACDTATDDCLYLGVQT A VI+ASPCCHKE+RR+M+K +        LQP++KHGIL+ERQAEIVTDS+RVL LQL+GY+AQ+FEWINDEETSKNLML A+KR+RPL AKK+   + QL E++ MFG+ +QHLL LL
Sbjct:   55 TPHERLASKLTESLIQEPSKFVRFKLTNYPAPSEDSAYPVIQKLQARFVSNANTDNVPTRLQVVYTHPTSTTTKNYDLTEAAHILTKHLSPTGPLKAARLFTTTEDWVLEAGRRMDKARFYKNKPTFTTLKIAEHDRKKKRRLTLTPF---------HEVSGEGQRLVDREKPL--SSPSKRKDSFLDVYGILGADGRPKAGMKEKFRQIEKFVEILASLLERETDESLSVTDFGPSVVKALSVLDAGCGKGYLTFAAYEYLTSKGWKAQVRGVEMRRDLVDQANAVASQLGYAP--GLTFIRGTIADLTAAAEVEGERYDVVIALHACDTATDDCLYLGVQTGAPVIIASPCCHKEIRRQMRKGQ-PGDLTVSLQPIVKHGILLERQAEIVTDSLRVLGLQLAGYQAQIFEWINDEETSKNLMLTASKRRRPLSAKKVIELRRQLGEMIGMFGVKSQHLLTLL 504
The following BLAST results are available for this feature:
BLAST of NO05G01830.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28251.11.600e-14459.48sam-dependent methyltransferase [Nannochloropsis g... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G01830NO05G01830Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G01830.1NO05G01830.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G01830.1.cds1NO05G01830.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G01830.1.cds2NO05G01830.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G01830.1 ID=NO05G01830.1|Name=NO05G01830.1|organism=Nannochloropsis oceanica|type=mRNA|length=1431bp
ATGGCCATCACGCCCCACGAAAATATGGCCTGCAAGCTCGAAACCTCCCT
CTTGTCCGCTTCACCCAATTTTGTCCGCTTCACCCTTACGAACAACCCCG
CCCCACCCAAGGACGCCAGCAACCCCGTCATTGAAAAGCTACAAGCCAGA
CTCGTGACCAGTGGAAGCGATAAATCCAAGCCTCCAACATTCCAAATAGT
CTATACGCACCCGACTTCCACCACCACCAAGAATTATGCGCTTACCGACG
CACCTGCTGTCCTTCGAGGGCATTTGGCCTCGACTGGACCGCTCAAGGCA
GCGCGGCTTTTCACCACCGCAGAGGACTGGGTTTTGGAGGTGAGGAAAAA
CACGGGTAGAGCACGCTTGTACAGAAATAAGGCAACATTTGCTGAAGTCG
AGGTGGGGACGCATGACCGACAAAAGAAGCGGCGCTTGGCATTAGTGTCC
CTCACGGAGGAAGAGAAAGAAGGTGGGAAGGAGGAAGGAAATGGAGACGG
AAAGGAAATGGGCGAGGCAGCACGTGTGATGTTATCATCGTCTATCTCGA
TGACCAAGAACAGTTTTTTGCACGAGTATGGAATTTTGGGGCCCGGAGGA
AGGCCGAAGGCCGGAATGAAGGACAAGTTCAGACAAATTGAAAAGTTTGT
GGAAATCCTTGCCTCGCAGCTCAAGGAGGGAAGCGACAATGAGAGCACTG
CTATGTCTGCAGCAGACCTGCAGAAAAAGACTCTGAAATTGTTGGACGCG
GGGTGTGGAAAGGGATATTTGACGTTTGCTGCTTATGAGTATTTGACCTC
GCAAGGGTATCGAGTTCAAGCACGAGGGGTGGACGTGACGCAAGACGTGG
TTGACAAGGCCAACGCCGTGGCGGATCGACTAGGATACAGTTCTGGGGGA
GGCTTGAGCTTCTCGCGGGGGACGATCGCAGAGGCCACGGCGAAGGTGAC
AGCTGGGCAAGAGAGATATGACGTGGTGATAGCGCTGCATGCCTGTGACA
CAGCCACAGATGATTGTCTTTACTTGGGGGTTCAGACGGAAGCGAGGGTC
ATTTTGGCAAGCCCTTGTTGCCACAAGGAAGTGAGGAGGGAGATGAAGAA
GGCGAAGCTGACGGCTGCGGCGGCAGAGCCGTTGCAGCCTGTGTTGAAGC
ATGGGATTTTAATGGAGCGGCAGGCGGAGATTGTGACAGACAGCATCCGC
GTGCTGGCCCTGCAGCTGTCGGGATACCGGGCGCAAGTATTTGAGTGGAT
CAATGACGAGGAGACGAGCAAGAACCTCATGCTTGCTGCCACTAAAAGGC
AACGGCCATTGGAGGCAAAGAAGTTGCGAGCGTTTCAAGGTCAGTTGCGA
GAACTGATGAACATGTTTGGTTTGGACACGCAACATTTGCTAGGATTGCT
TGGAGCGGGACTGGAGGAAGAGAAGGAGTAA
back to top

protein sequence of NO05G01830.1

>NO05G01830.1-protein ID=NO05G01830.1-protein|Name=NO05G01830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=477bp
MAITPHENMACKLETSLLSASPNFVRFTLTNNPAPPKDASNPVIEKLQAR
LVTSGSDKSKPPTFQIVYTHPTSTTTKNYALTDAPAVLRGHLASTGPLKA
ARLFTTAEDWVLEVRKNTGRARLYRNKATFAEVEVGTHDRQKKRRLALVS
LTEEEKEGGKEEGNGDGKEMGEAARVMLSSSISMTKNSFLHEYGILGPGG
RPKAGMKDKFRQIEKFVEILASQLKEGSDNESTAMSAADLQKKTLKLLDA
GCGKGYLTFAAYEYLTSQGYRVQARGVDVTQDVVDKANAVADRLGYSSGG
GLSFSRGTIAEATAKVTAGQERYDVVIALHACDTATDDCLYLGVQTEARV
ILASPCCHKEVRREMKKAKLTAAAAEPLQPVLKHGILMERQAEIVTDSIR
VLALQLSGYRAQVFEWINDEETSKNLMLAATKRQRPLEAKKLRAFQGQLR
ELMNMFGLDTQHLLGLLGAGLEEEKE*
back to top

mRNA from alignment at chr5:500628..502181-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G01830.1 ID=NO05G01830.1|Name=NO05G01830.1|organism=Nannochloropsis oceanica|type=mRNA|length=1554bp|location=Sequence derived from alignment at chr5:500628..502181- (Nannochloropsis oceanica)
ATGGCCATCACGCCCCACGAAAATATGGCCTGCAAGCTCGAAACCTCCCT
CTTGTCCGCTTCACCCAATTTTGTCCGCTTCACCCTTACGAACAACCCCG
CCCCACCCAAGGACGCCAGCAACCCCGTCATTGAAAAGCTACAAGCCAGA
CTCGTGACCAGTGGAAGCGATAAATCCAAGCCTCCAACATTCCAAATAGT
CTATACGCACCCGACTTCCACCACCACCAAGAATTATGCGCTTACCGACG
CACCTGCTGTCCTTCGAGGGCATTTGGCCTCGACTGGACCGCTCAAGGCA
GCGCGGCTTTTCACCACCGCAGAGGACTGGGTTTTGGAGGTGAGGAAAAA
CACGGGTAGAGCACGCTTGTACAGAAATAAGGCAACATTTGCTGAAGTCG
AGGTGGGGACGCATGACCGACAAAAGAAGCGGCGCTTGGCATTAGTGTCC
CTCACGGAGGAAGAGAAAGAAGGTGGGAAGGAGGAAGGAAATGGAGACGG
AAAGGAAATGGGCGAGGCAGCACGTGTGATGTTATCATCGTCTATCTCGA
TGACCAAGAACAGTTTTTTGCACGAGTATGGAATTTTGGGGCCCGGAGGA
AGGCCGAAGGCCGGAATGAAGGACAAGTTCAGACAAATTGAAAAGTTTGT
GGAAATCCTTGCCTCGCAGCTCAAGGAGGGAAGCGACAATGAGAGCACTG
CTATGTCTGCAGCAGACCTGCAGAAAAAGACTCTGAAATTGTTGGACGCG
GGGTGTGGAAAGGGATATTTGACGTTTGCTGCTTATGAGTATTTGACCTC
GCAAGGGTATCGAGTTCAAGCACGAGGGGTGGACGTGACGCAAGACGTGG
TTGACAAGGCCAACGCCGTGGCGGATCGACTAGGATACAGTTCTGGGGGA
GGCTTGAGCTTCTCGCGGGGGACGATCGCAGAGGCCACGGCGAAGGTGAC
AGCTGGGCAAGAGAGATATGACGTGGTGATAGCGCTGCATGCCTGTGACA
CAGCCACAGATGATTGTCTTTACTTGGGGGTTCAGACGGAAGCGAGGGTC
ATTTTGGCAAGCCCTTGTTGCCACAAGGAAGTGAGGAGGGAGATGAAGAA
GGCGAAGCTGACGGCTGCGGCGGCAGAGCCGTTGCAGCCTGTGTTGAAGC
ATGGGATTTTAATGGAGCGGCAGGCGGAGATTGTGACAGACAGGTATGTT
TCGTCAGTGTGAGAGGGAATTGAGAGAAGGCGATGAGGCGGTTGGTAAAT
GGGTGGACGAGAAAATGAAAATATGCACACATATTTATTCACGATCTTCG
TTTCCGTTAAATACAGCATCCGCGTGCTGGCCCTGCAGCTGTCGGGATAC
CGGGCGCAAGTATTTGAGTGGATCAATGACGAGGAGACGAGCAAGAACCT
CATGCTTGCTGCCACTAAAAGGCAACGGCCATTGGAGGCAAAGAAGTTGC
GAGCGTTTCAAGGTCAGTTGCGAGAACTGATGAACATGTTTGGTTTGGAC
ACGCAACATTTGCTAGGATTGCTTGGAGCGGGACTGGAGGAAGAGAAGGA
GTAA
back to top

Coding sequence (CDS) from alignment at chr5:500628..502181-

>NO05G01830.1 ID=NO05G01830.1|Name=NO05G01830.1|organism=Nannochloropsis oceanica|type=CDS|length=1431bp|location=Sequence derived from alignment at chr5:500628..502181- (Nannochloropsis oceanica)
ATGGCCATCACGCCCCACGAAAATATGGCCTGCAAGCTCGAAACCTCCCT
CTTGTCCGCTTCACCCAATTTTGTCCGCTTCACCCTTACGAACAACCCCG
CCCCACCCAAGGACGCCAGCAACCCCGTCATTGAAAAGCTACAAGCCAGA
CTCGTGACCAGTGGAAGCGATAAATCCAAGCCTCCAACATTCCAAATAGT
CTATACGCACCCGACTTCCACCACCACCAAGAATTATGCGCTTACCGACG
CACCTGCTGTCCTTCGAGGGCATTTGGCCTCGACTGGACCGCTCAAGGCA
GCGCGGCTTTTCACCACCGCAGAGGACTGGGTTTTGGAGGTGAGGAAAAA
CACGGGTAGAGCACGCTTGTACAGAAATAAGGCAACATTTGCTGAAGTCG
AGGTGGGGACGCATGACCGACAAAAGAAGCGGCGCTTGGCATTAGTGTCC
CTCACGGAGGAAGAGAAAGAAGGTGGGAAGGAGGAAGGAAATGGAGACGG
AAAGGAAATGGGCGAGGCAGCACGTGTGATGTTATCATCGTCTATCTCGA
TGACCAAGAACAGTTTTTTGCACGAGTATGGAATTTTGGGGCCCGGAGGA
AGGCCGAAGGCCGGAATGAAGGACAAGTTCAGACAAATTGAAAAGTTTGT
GGAAATCCTTGCCTCGCAGCTCAAGGAGGGAAGCGACAATGAGAGCACTG
CTATGTCTGCAGCAGACCTGCAGAAAAAGACTCTGAAATTGTTGGACGCG
GGGTGTGGAAAGGGATATTTGACGTTTGCTGCTTATGAGTATTTGACCTC
GCAAGGGTATCGAGTTCAAGCACGAGGGGTGGACGTGACGCAAGACGTGG
TTGACAAGGCCAACGCCGTGGCGGATCGACTAGGATACAGTTCTGGGGGA
GGCTTGAGCTTCTCGCGGGGGACGATCGCAGAGGCCACGGCGAAGGTGAC
AGCTGGGCAAGAGAGATATGACGTGGTGATAGCGCTGCATGCCTGTGACA
CAGCCACAGATGATTGTCTTTACTTGGGGGTTCAGACGGAAGCGAGGGTC
ATTTTGGCAAGCCCTTGTTGCCACAAGGAAGTGAGGAGGGAGATGAAGAA
GGCGAAGCTGACGGCTGCGGCGGCAGAGCCGTTGCAGCCTGTGTTGAAGC
ATGGGATTTTAATGGAGCGGCAGGCGGAGATTGTGACAGACAGCATCCGC
GTGCTGGCCCTGCAGCTGTCGGGATACCGGGCGCAAGTATTTGAGTGGAT
CAATGACGAGGAGACGAGCAAGAACCTCATGCTTGCTGCCACTAAAAGGC
AACGGCCATTGGAGGCAAAGAAGTTGCGAGCGTTTCAAGGTCAGTTGCGA
GAACTGATGAACATGTTTGGTTTGGACACGCAACATTTGCTAGGATTGCT
TGGAGCGGGACTGGAGGAAGAGAAGGAGTAA
back to top
Synonyms
Publications