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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr5 | genome | chr5:497305..500031 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G01820.1 vs.
Match: EWM28162.1 (Acyltransferase 3 [Nannochloropsis gaditana]) HSP 1 Score: 1008.8 bits (2607), Expect = 8.500e-291 Identity = 518/743 (69.72%), Postives = 603/743 (81.16%), Query Frame = 0
Query: 1 MAAPVT----PPAPLPQLPPPFLQTLVKNPNVSAACVAGANAVLQNTRLARQAEFFSGRVTEGLSLILPPVLKKVVLAPDKRVGMGEFLHEAPLWSLGVPDSCGYIGLNYCRIEVIPVFAKWGVCVPSECTSEDIKTAIFPPITQQLADRVKTACGAMTADKALFFTVEPISVAAWSALMLVLLLLLLALGATIVDAYGREWNPRIFKKDGALRRVLMCFSLSGNYQSLMAPPRGGPFASFEAVRTLGMCMILLGHTLFFNLTVVGVTNPRESLGFYGRGFLATMPGLIADGSLLGVDTFLVLAGFLAFFLFLKELGKRMT-SPHSRKGSDA-GAAAGPTLKSTSTSTSAKNGRKLCQMALVSYVRRYLRLTPAYAVMLLIFTALAPLMSSAPPSPTGIMVEAQQCSEKWWQNLLYINNILSNPYTMCYQASWFLAVVQQLFLLVPWVSALAFWRPKWGLALVMGLCLASYMYTFREAQREGWRINSIDRPGFPKFFADFYASTFTRMPTFLIGGMAAIVWYHWGERMGKYWAVKEGKEGRRVSVQVVVVMAVAMVLFALTMFGPYRELGWAPGSWSQTTSSMYITLSFSGWVMGLVLLCGVLALGRGGWIKKFLELPFWAVPSRLTYSTYLVHPMVILTVIGSDGGQPFHFSMLHVFNAFVGYSTLSAISAVVFFFLVEAPFGEMERLLFSRLPPPSSSSQVLVK--IKGIEGVENREQEKNEEAMVVISPEAVGEERMEER 736
MA P T PP LP LPPPFLQTLVKNPNVSAACVAGAN VLQ++ LARQAE+FSGRV+EGLSL+LPPVLK VV A DKR+G+GEF+++ PLWSLGVPDSCGYIGL YC+I+VIPVF KWGVCVP EC+++DIKTAIFPPITQ+LA+RVK CG M ADKALF TVEP+S AW+AL+L+ LL++ A ATI+D Y +WN +K G +R V+ FS+S NY+ LMAPPR GPFASF+AVRTL M MILLGHTL+FNLTVVG+TNPRESLGFYGRGFLAT PGLIA+GSLLGVDTFL LAGFLAF++FLKEL KR+ SP +RK A + GP ++ T + K+ QMALV+Y+RRYLRLTPAYAV+LLIFT LAPLMSSAPPSPTG+M E+Q C EKWWQNLLYINNILSNPYTMCYQASWFLAVVQQLFLLVPW+SALAF RP GL + + LC+ SY+YTF+ +Q +GWRINSIDRPGFP+FFADFYA TFTRMPTFLIGGMAAI+++ +G+R +YW K + V VQV + +A+ L A +FGPYREL +APG WSQTTSS YITL+FS WVMGL LCGVLA+GRGG +K+FLELPFWAV SRLTYSTYLVHPMVIL+VI SDGGQPFHFSMLH+FNAF+GYS LS ISAV+FFFLVEAPFGE+ERLLFSRLPPPSSSS + K +G E E K E +V++S + E+ E R
Sbjct: 1 MATPATAISAPPPSLPALPPPFLQTLVKNPNVSAACVAGANRVLQDSVLARQAEYFSGRVSEGLSLLLPPVLKHVVFAKDKRLGLGEFIYQPPLWSLGVPDSCGYIGLEYCQIDVIPVFTKWGVCVPPECSADDIKTAIFPPITQELAERVKARCGPMNADKALFLTVEPLSAGAWAALILIALLIIFASAATILDVYDDKWNMPYLQK-GRMRSVVDSFSMSRNYERLMAPPRAGPFASFDAVRTLAMGMILLGHTLYFNLTVVGITNPRESLGFYGRGFLATGPGLIANGSLLGVDTFLGLAGFLAFYIFLKELEKRLDPSPRARKPQSAVSSQQGPQDRA---GTCGRGAWKVTQMALVAYLRRYLRLTPAYAVILLIFTFLAPLMSSAPPSPTGVMQESQVCQEKWWQNLLYINNILSNPYTMCYQASWFLAVVQQLFLLVPWLSALAFLRPWLGLMVGVALCVGSYVYTFQHSQAQGWRINSIDRPGFPRFFADFYAGTFTRMPTFLIGGMAAILYFKYGDRCREYWRRKSLQTPGTVRVQVWAAIGLALALLAAAIFGPYRELAFAPGKWSQTTSSSYITLAFSAWVMGLCFLCGVLAMGRGGLLKRFLELPFWAVTSRLTYSTYLVHPMVILSVISSDGGQPFHFSMLHIFNAFLGYSVLSGISAVIFFFLVEAPFGELERLLFSRLPPPSSSSTLKEKCTTEGKECGGKNEGGKEREVLVILSEASEAVEQREAR 739
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G01820.1 ID=NO05G01820.1|Name=NO05G01820.1|organism=Nannochloropsis oceanica|type=mRNA|length=2214bp ATGGCCGCACCAGTTACCCCACCGGCGCCCTTGCCGCAGCTTCCGCCGCC CTTCCTGCAGACCCTTGTTAAAAACCCCAACGTGTCAGCGGCATGCGTTG CAGGTGCAAATGCTGTCCTTCAAAATACCCGCTTGGCCCGACAAGCCGAA TTCTTCTCAGGCCGCGTCACCGAAGGCCTCAGTCTAATCCTCCCCCCAGT TCTTAAAAAAGTCGTCCTCGCTCCCGATAAACGCGTTGGAATGGGTGAAT TCCTTCATGAGGCTCCTCTTTGGTCGTTGGGAGTGCCCGATTCTTGCGGA TATATCGGATTAAACTACTGTCGAATTGAAGTTATCCCCGTTTTTGCCAA GTGGGGTGTGTGTGTCCCATCGGAATGTACGTCTGAAGATATAAAGACAG CCATCTTTCCTCCGATAACCCAGCAATTGGCCGACAGGGTCAAAACGGCC TGCGGAGCCATGACGGCTGACAAGGCTCTCTTCTTCACCGTTGAGCCCAT CAGTGTCGCAGCGTGGTCTGCGCTCATGCTGGTGCTGCTGCTGCTTCTGC TGGCGCTGGGCGCGACGATCGTAGACGCGTACGGGCGAGAATGGAATCCT CGGATTTTTAAAAAGGATGGCGCTTTGCGAAGGGTTCTGATGTGTTTCTC ACTATCAGGAAATTATCAAAGTCTGATGGCGCCGCCGCGTGGGGGGCCGT TCGCGTCGTTTGAAGCGGTTCGGACGCTGGGCATGTGCATGATCCTGCTT GGCCACACGCTGTTCTTCAATCTAACCGTCGTCGGGGTGACCAACCCCCG CGAATCGCTGGGGTTCTACGGCCGAGGCTTCTTGGCAACCATGCCAGGTT TGATCGCGGATGGTTCATTGTTGGGGGTGGATACGTTCTTAGTCCTTGCT GGTTTCTTGGCTTTCTTTCTCTTTTTGAAAGAACTGGGCAAGCGGATGAC ATCCCCTCACAGTAGGAAGGGATCCGATGCAGGAGCTGCAGCTGGCCCTA CACTCAAAAGCACGTCCACCAGCACCAGCGCTAAAAATGGCCGGAAGCTG TGTCAGATGGCCTTGGTCTCCTACGTCCGTCGCTACCTGCGTCTGACACC CGCCTACGCTGTAATGCTCCTGATTTTTACCGCCCTTGCCCCGTTGATGA GCAGCGCTCCTCCCTCCCCCACTGGAATTATGGTCGAGGCACAACAGTGC AGTGAAAAATGGTGGCAGAACTTATTGTACATCAACAATATCCTCTCTAA CCCTTACACTATGTGCTACCAAGCGTCGTGGTTCTTGGCCGTGGTGCAAC AGCTCTTCCTCCTCGTTCCGTGGGTGAGCGCGCTGGCCTTCTGGAGACCC AAATGGGGCCTAGCGCTAGTGATGGGGTTGTGCCTGGCAAGCTACATGTA CACGTTCAGGGAGGCACAAAGGGAGGGGTGGAGGATCAATAGCATCGACC GACCGGGATTTCCCAAGTTTTTTGCGGATTTTTATGCGAGTACCTTTACC CGGATGCCAACTTTCTTGATTGGGGGGATGGCGGCGATTGTTTGGTACCA TTGGGGAGAACGAATGGGAAAATATTGGGCTGTAAAAGAAGGGAAGGAGG GGAGGAGGGTGTCTGTGCAGGTGGTGGTGGTGATGGCGGTGGCGATGGTG CTGTTCGCGTTGACAATGTTCGGGCCGTATAGGGAGTTGGGATGGGCGCC CGGAAGCTGGAGTCAGACGACGAGTAGCATGTATATCACCTTGTCTTTCT CGGGTTGGGTGATGGGATTGGTATTGCTGTGTGGAGTGCTGGCCTTGGGG AGGGGAGGCTGGATAAAGAAGTTTTTGGAGTTACCGTTTTGGGCGGTTCC TTCCAGGTTGACGTACAGCACGTACTTGGTTCATCCGATGGTCATTTTAA CCGTCATCGGCTCAGATGGTGGGCAGCCCTTCCACTTCTCCATGCTCCAT GTCTTTAATGCCTTCGTTGGCTACTCCACCTTATCGGCGATCTCGGCTGT TGTGTTTTTCTTCTTGGTCGAAGCCCCGTTCGGGGAGATGGAACGCTTGC TTTTCTCTCGGTTGCCGCCACCGTCATCGTCTTCGCAGGTACTGGTCAAG ATCAAGGGGATAGAGGGAGTAGAGAATAGAGAGCAGGAGAAAAACGAGGA GGCAATGGTCGTTATCTCACCAGAGGCGGTGGGAGAGGAAAGAATGGAGG AGAGGGTGGGCTAG back to topprotein sequence of NO05G01820.1 >NO05G01820.1-protein ID=NO05G01820.1-protein|Name=NO05G01820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=738bp MAAPVTPPAPLPQLPPPFLQTLVKNPNVSAACVAGANAVLQNTRLARQAE FFSGRVTEGLSLILPPVLKKVVLAPDKRVGMGEFLHEAPLWSLGVPDSCG YIGLNYCRIEVIPVFAKWGVCVPSECTSEDIKTAIFPPITQQLADRVKTA CGAMTADKALFFTVEPISVAAWSALMLVLLLLLLALGATIVDAYGREWNP RIFKKDGALRRVLMCFSLSGNYQSLMAPPRGGPFASFEAVRTLGMCMILL GHTLFFNLTVVGVTNPRESLGFYGRGFLATMPGLIADGSLLGVDTFLVLA GFLAFFLFLKELGKRMTSPHSRKGSDAGAAAGPTLKSTSTSTSAKNGRKL CQMALVSYVRRYLRLTPAYAVMLLIFTALAPLMSSAPPSPTGIMVEAQQC SEKWWQNLLYINNILSNPYTMCYQASWFLAVVQQLFLLVPWVSALAFWRP KWGLALVMGLCLASYMYTFREAQREGWRINSIDRPGFPKFFADFYASTFT RMPTFLIGGMAAIVWYHWGERMGKYWAVKEGKEGRRVSVQVVVVMAVAMV LFALTMFGPYRELGWAPGSWSQTTSSMYITLSFSGWVMGLVLLCGVLALG RGGWIKKFLELPFWAVPSRLTYSTYLVHPMVILTVIGSDGGQPFHFSMLH VFNAFVGYSTLSAISAVVFFFLVEAPFGEMERLLFSRLPPPSSSSQVLVK IKGIEGVENREQEKNEEAMVVISPEAVGEERMEERVG* back to topmRNA from alignment at chr5:497305..500031- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G01820.1 ID=NO05G01820.1|Name=NO05G01820.1|organism=Nannochloropsis oceanica|type=mRNA|length=2727bp|location=Sequence derived from alignment at chr5:497305..500031- (Nannochloropsis oceanica) ATGGCCGCACCAGTTACCCCACCGGCGCCCTTGCCGCAGCTTCCGCCGCC
CTTCCTGCAGACCCTTGTTAAAAACCCCAACGTGTCAGCGGCATGCGTTG
CAGGTAAGCACCATGGAAGCAGAGAAAGTCTCGATACCTTTGCACAGCCT
CTCCCTCCCATCCGATTCCCCCTCATCCTTCCCCCGTAGCTTGCCACACT
ACATCTACGAACATCGTTCTTACCATCTTACCACAAAATACTGGATTTAT
AATCATACAAACATCCAGGTGCAAATGCTGTCCTTCAAAATACCCGCTTG
GCCCGACAAGCCGAATTCTTCTCAGGCCGCGTCACCGAAGGCCTCAGTCT
AATCCTCCCCCCAGTTCTTAAAAAAGTCGTCCTCGCTCCCGATAAACGCG
TTGGAATGGGTGAATTCCTTCATGAGGCTCCTCTTTGGTCGTTGGGAGTG
CCCGATTCTTGCGGATATATCGGATTAAACTACTGTCGAATTGAAGTTAT
CCCCGTTTTTGCCAAGTGGGGTGTGTGTGTCCCATCGGAATGTACGTCTG
AAGATATAAAGACAGCCATCTTTCCTCCGATAACCCAGCAATTGGCCGAC
AGGGTCAAAACGGCCTGCGGAGCCATGACGGCTGACAAGGCTCTCTTCTT
CACCGTTGAGCCCATCAGTGTCGCAGCGTGGTCTGCGCTCATGCTGGTGC
TGCTGCTGCTTCTGCTGGCGCTGGGCGCGACGATCGTAGACGCGTACGGG
CGAGAATGGAATCCTCGGATTTTTAAAAAGGATGGCGCTTTGCGAAGGGT
TCTGATGTGTTTCTCACTATCAGGAAATTATCAAAGTCTGATGGCGCCGC
CGCGTGGGGGGCCGTTCGCGTCGTTTGAAGCGGTTCGGACGCTGGGCATG
TGCATGATCCTGCTTGGCCACACGCTGTGAGTATACTCTTGTGCGCAAAT
CAACCTACCCTTTTGCCGTATCTTGTTCTCAGTTACAGATATTGTCTTTC
AGTTCCGCTTTCATGGTACGCACTCTCACAAATAACGCCCTTCCAACCTT
ACTCCAGGTTCTTCAATCTAACCGTCGTCGGGGTGACCAACCCCCGCGAA
TCGCTGGGGTTCTACGGCCGAGGCTTCTTGGCAACCATGCCAGGTTTGAT
CGCGGATGGTTCATTGTTGGGGGTGGATACGTTCTTAGTCCTTGCTGGTT
TCTTGGCTTTCTTTCTCTTTTTGAAAGAACTGGGCAAGCGGATGACATCC
CCTCACAGTAGGAAGGGATCCGATGCAGGAGCTGCAGCTGGCCCTACACT
CAAAAGCACGTCCACCAGCACCAGCGCTAAAAATGGCCGGAAGCTGTGTC
AGATGGCCTTGGTCTCCTACGTCCGTCGCTACCTGCGTCTGACACCCGCC
TACGCTGTAATGCTCCTGATTTTTACCGCCCTTGCCCCGTTGATGAGCAG
CGCTCCTCCCTCCCCCACTGGAATTATGGTCGAGGCACAACAGTGCAGTG
AAAAATGGTGGCAGAACTTATTGTACATCAACAATATCCTCTCTAACCCT
TACACTATGTGCTACCAAGCGTCGTGGTTCTTGGCCGTGGTGCAACAGCT
CTTCCTCCTCGTTCCGTGGGTGAGCGCGCTGGCCTTCTGGAGACCCAAAT
GGGGCCTAGCGCTAGTGATGGGGTTGTGCCTGGCAAGCTACATGTACACG
TTCAGGGAGGCACAAAGGGAGGGGTGGAGGATCAATAGCATCGACCGACC
GGGATTTCCCAAGTTTTTTGCGGATTTTTATGCGAGTACCTTTACCCGGA
TGCCAACTTTCTTGATTGGGGGGATGGCGGCGATTGTTTGGTACCATTGG
GGAGAACGAATGGGAAAATATTGGGCTGTAAAAGAAGGGAAGGAGGGGAG
GAGGGTGTCTGTGCAGGTGGTGGTGGTGATGGCGGTGGCGATGGTGCTGT
TCGCGTTGACAATGTTCGGGCCGTATAGGGAGTTGGGATGGGCGCCCGGA
AGCTGGAGTCAGACGACGAGTAGCATGTATATCACCTTGTCTTTCTCGGG
TTGGGTGATGGGATTGGTATTGCTGTGTGGAGTGCTGGCCTTGGGGAGGG
GAGGCTGGATAAAGAAGTTTTTGGAGTTACCGTTTTGGGCGGTTCCTTCC
AGGTTGACGTACAGCACGTACTTGGTTCATCCGATGGTAAGTGGAGGAAG
GGAAGGAGCGAGAGAGGGAGGGAGAGAGGGTATGGTATAGCCGAGGGAAA
GGGAAAGGTCGATGGCCTCCACGTATGCATGTTCGCCACTCTTATCTCTT
ATCTTCAATTGCTGTGCTCTTCTACTCATTTATACCCTCAGTCTTCAAAA
GCGGAACAGCTTTAATTATTCAACCTCTACATTTCCCTCCGAACAAAATA
CAGGTCATTTTAACCGTCATCGGCTCAGATGGTGGGCAGCCCTTCCACTT
CTCCATGCTCCATGTCTTTAATGCCTTCGTTGGCTACTCCACCTTATCGG
CGATCTCGGCTGTTGTGTTTTTCTTCTTGGTCGAAGCCCCGTTCGGGGAG
ATGGAACGCTTGCTTTTCTCTCGGTTGCCGCCACCGTCATCGTCTTCGCA
GGTACTGGTCAAGATCAAGGGGATAGAGGGAGTAGAGAATAGAGAGCAGG
AGAAAAACGAGGAGGCAATGGTCGTTATCTCACCAGAGGCGGTGGGAGAG
GAAAGAATGGAGGAGAGGGTGGGCTAG back to topCoding sequence (CDS) from alignment at chr5:497305..500031- >NO05G01820.1 ID=NO05G01820.1|Name=NO05G01820.1|organism=Nannochloropsis oceanica|type=CDS|length=2214bp|location=Sequence derived from alignment at chr5:497305..500031- (Nannochloropsis oceanica) ATGGCCGCACCAGTTACCCCACCGGCGCCCTTGCCGCAGCTTCCGCCGCC CTTCCTGCAGACCCTTGTTAAAAACCCCAACGTGTCAGCGGCATGCGTTG CAGGTGCAAATGCTGTCCTTCAAAATACCCGCTTGGCCCGACAAGCCGAA TTCTTCTCAGGCCGCGTCACCGAAGGCCTCAGTCTAATCCTCCCCCCAGT TCTTAAAAAAGTCGTCCTCGCTCCCGATAAACGCGTTGGAATGGGTGAAT TCCTTCATGAGGCTCCTCTTTGGTCGTTGGGAGTGCCCGATTCTTGCGGA TATATCGGATTAAACTACTGTCGAATTGAAGTTATCCCCGTTTTTGCCAA GTGGGGTGTGTGTGTCCCATCGGAATGTACGTCTGAAGATATAAAGACAG CCATCTTTCCTCCGATAACCCAGCAATTGGCCGACAGGGTCAAAACGGCC TGCGGAGCCATGACGGCTGACAAGGCTCTCTTCTTCACCGTTGAGCCCAT CAGTGTCGCAGCGTGGTCTGCGCTCATGCTGGTGCTGCTGCTGCTTCTGC TGGCGCTGGGCGCGACGATCGTAGACGCGTACGGGCGAGAATGGAATCCT CGGATTTTTAAAAAGGATGGCGCTTTGCGAAGGGTTCTGATGTGTTTCTC ACTATCAGGAAATTATCAAAGTCTGATGGCGCCGCCGCGTGGGGGGCCGT TCGCGTCGTTTGAAGCGGTTCGGACGCTGGGCATGTGCATGATCCTGCTT GGCCACACGCTGTTCTTCAATCTAACCGTCGTCGGGGTGACCAACCCCCG CGAATCGCTGGGGTTCTACGGCCGAGGCTTCTTGGCAACCATGCCAGGTT TGATCGCGGATGGTTCATTGTTGGGGGTGGATACGTTCTTAGTCCTTGCT GGTTTCTTGGCTTTCTTTCTCTTTTTGAAAGAACTGGGCAAGCGGATGAC ATCCCCTCACAGTAGGAAGGGATCCGATGCAGGAGCTGCAGCTGGCCCTA CACTCAAAAGCACGTCCACCAGCACCAGCGCTAAAAATGGCCGGAAGCTG TGTCAGATGGCCTTGGTCTCCTACGTCCGTCGCTACCTGCGTCTGACACC CGCCTACGCTGTAATGCTCCTGATTTTTACCGCCCTTGCCCCGTTGATGA GCAGCGCTCCTCCCTCCCCCACTGGAATTATGGTCGAGGCACAACAGTGC AGTGAAAAATGGTGGCAGAACTTATTGTACATCAACAATATCCTCTCTAA CCCTTACACTATGTGCTACCAAGCGTCGTGGTTCTTGGCCGTGGTGCAAC AGCTCTTCCTCCTCGTTCCGTGGGTGAGCGCGCTGGCCTTCTGGAGACCC AAATGGGGCCTAGCGCTAGTGATGGGGTTGTGCCTGGCAAGCTACATGTA CACGTTCAGGGAGGCACAAAGGGAGGGGTGGAGGATCAATAGCATCGACC GACCGGGATTTCCCAAGTTTTTTGCGGATTTTTATGCGAGTACCTTTACC CGGATGCCAACTTTCTTGATTGGGGGGATGGCGGCGATTGTTTGGTACCA TTGGGGAGAACGAATGGGAAAATATTGGGCTGTAAAAGAAGGGAAGGAGG GGAGGAGGGTGTCTGTGCAGGTGGTGGTGGTGATGGCGGTGGCGATGGTG CTGTTCGCGTTGACAATGTTCGGGCCGTATAGGGAGTTGGGATGGGCGCC CGGAAGCTGGAGTCAGACGACGAGTAGCATGTATATCACCTTGTCTTTCT CGGGTTGGGTGATGGGATTGGTATTGCTGTGTGGAGTGCTGGCCTTGGGG AGGGGAGGCTGGATAAAGAAGTTTTTGGAGTTACCGTTTTGGGCGGTTCC TTCCAGGTTGACGTACAGCACGTACTTGGTTCATCCGATGGTCATTTTAA CCGTCATCGGCTCAGATGGTGGGCAGCCCTTCCACTTCTCCATGCTCCAT GTCTTTAATGCCTTCGTTGGCTACTCCACCTTATCGGCGATCTCGGCTGT TGTGTTTTTCTTCTTGGTCGAAGCCCCGTTCGGGGAGATGGAACGCTTGC TTTTCTCTCGGTTGCCGCCACCGTCATCGTCTTCGCAGGTACTGGTCAAG ATCAAGGGGATAGAGGGAGTAGAGAATAGAGAGCAGGAGAAAAACGAGGA GGCAATGGTCGTTATCTCACCAGAGGCGGTGGGAGAGGAAAGAATGGAGG AGAGGGTGGGCTAG back to top
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