NO05G01750.1, NO05G01750.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G01750.1
Unique NameNO05G01750.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2824
Alignment locationchr5:477204..480133 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:477204..480133 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO05G01750.1 vs.
Match: EWM28285.1 (solute carrier family 36 (proton amino acid symporter) member 1 [Nannochloropsis gaditana])

HSP 1 Score: 525.8 bits (1353), Expect = 1.600e-145
Identity = 288/450 (64.00%), Postives = 337/450 (74.89%), Query Frame = 0
Query:  137 KELLREEQGLVVENYEELAGAIFGPRAFRFCRFLMATITLIYTSGFVIVIGSSLNDVLPAVHRAVWCGLLFPVLTILSWIPFMKDLWFVSLLGLGTYLIGVVGSTIYFANHNYDSPTPSPWEWRWEGAPHFYGVAVYSLEGINLTLPVSASMKSLQKPPYVMTMGVCLFAGVTAFYSSYAYAAGLGSCDIIIQCLGRGAFVNIVRVALALSLIATHPVYLIVASEIFERALLGDPLATVPPITE----------EGEQEGGG---------VMPAAGNQLHGCGV---------------------LQGE----EDASRRRTSEG--TNDSSRLITNDPFLFSSTCSLLPSFLLTQQAQARIIRAIEVLLTCLVGACVPNLGAFTSLIGATFVTLIGFVFPAAMWWALQKEDVHASSWEKARVYGVAGLVILAGLVAMVVGTVESVRNIA 541
            ++LLREEQG+VVENYEELAGA+FGPRAFRFC+ LMAT+TLIYTSGFVIVI SSL DV+PAV RA+WC ++FP+LT+LSW+PFM+DLWFVSLLGLGTYL GVVGST++ A  ++D P P+P  W WEGA HFYGVAVYSLEGINLTLPVSASMKSL+KPP VMT+GVCLFAG+TAFY+S+AYAAGLGSCDIIIQCLG G FVN++RVALALSL+ATHPVYLIVASEIFERALLGDP   VP   +          E E EG G         V+  +G+  +   V                     +QGE    ED    R S G  T  +SR   + P L +S  S     L T+QAQAR+IRA+EV LTC+VGA +PNLG FTSL+GATFVT+IGF+FPAAMW  LQ+ED HAS W KARVYG+AGLVI AGL AMVVGTVE +RN++
Sbjct:   51 QDLLREEQGIVVENYEELAGAVFGPRAFRFCQTLMATLTLIYTSGFVIVISSSLYDVMPAVPRAMWCAIVFPILTLLSWVPFMEDLWFVSLLGLGTYLFGVVGSTLFVAARDFDPP-PAPMAWHWEGAAHFYGVAVYSLEGINLTLPVSASMKSLRKPPLVMTVGVCLFAGITAFYASFAYAAGLGSCDIIIQCLGPGPFVNVIRVALALSLLATHPVYLIVASEIFERALLGDPSVPVPEALDGAQETEEAGLEDETEGAGTAMTGAMLPVVCRSGSHQNSSWVDHSEDGRSHAKATSPQRLEVSVQGEDNGREDGLHERESMGASTQSNSRTSASLP-LPASISSFASRRLATRQAQARLIRAVEVFLTCMVGALIPNLGVFTSLVGATFVTIIGFIFPAAMWLELQREDTHASFWAKARVYGIAGLVIAAGLAAMVVGTVEGLRNLS 498          
The following BLAST results are available for this feature:
BLAST of NO05G01750.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28285.11.600e-14564.00solute carrier family 36 (proton amino acid sympor... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G01750NO05G01750Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G01750.1NO05G01750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G01750.1.cds1NO05G01750.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G01750.1.cds2NO05G01750.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G01750.1 ID=NO05G01750.1|Name=NO05G01750.1|organism=Nannochloropsis oceanica|type=mRNA|length=2824bp
GTGACTGTATGGGCCAACGATGGGGTACAGATGGGCCTGTCGTCACGCGA
GAAAACCTGAATTAACGAAAAGATGACGAGGCGGGGGATTTCTTGTGTGT
CGGATGATTTCATCTGCCAGGATGTCGTGTTTGGACACGATGTTGTGTAG
AAGATGATTCATGACTTGATTCTACCCCGTCGCGAACGAGTAGTACAACA
GACCCGAAAGACTCTGTGCCTCCCTCCGTCCTCGTCCTCGTTCAGCGACA
CACTAATCCGCACGACACACACTAATTGTACAGGCGCACTATCATGGCCA
GCACTAACAGCACCACTATGATAAGGTCTAGCAGCGTCCGCTTGACATAA
AGCCCGGGTCTCTTACACCTTATGCAACCGGCACAACGGACCCGCATCAT
GCGCCGTGGAGTGTATGCTCGATAACGTCCTTCAATGTTGCCCCCCACCG
CTAGCTACCGAAGGCACATTTGTGTTTGACGCACGAGCAATCAATGGACC
TGCTGTAGGACATTAGCAGCATGCCAGAAGTGAGAGAAGAGCTCACGGCT
GCGATAGGAATCCACGAGCCGACTTATCCCGCGGACAACCGCGTGAATCA
ACTGCATGTGAATCTTACCACGGGCTGCTTGACAAACAGGAAAACCTTCG
TCGCTTGCATACACGCGATAGGTCTTTATCGGCACCTATGCGACAAGCAC
AACGTCTTCTCATCCCCTTCCTCTACCATTACCCGACCACAGGACCCCCA
AAAACAATGCGTCCCGTTTTGCCCACGGCCCCCCCAACGTCACTTCCCGC
CATCACGCCCGACTCGTCCACATGCTCTACCACCCCTTTGTCAGGAGTAG
CAGGCTATCGCAAGCTATCAAGTGAAAATGGTGGCACGATCAATGGCACG
ACATCCCCATCTTCACAACATCATAACAAAACCAGCACGCGCATTGCGTT
GTTGATTTTTTTCAAAGGCCTTTTTGGCGCCGGTGTGTTGGCGATTCCAG
GGGCTTTTGAGAGCACGGGGGTCCCCTTGGGCTTGTTGATCTTTCTGTCT
GTCTCATCATTGTGTCTTGGGACAATGCTTATGCTGCTGCGTTGCAAGGA
GCTCCTTCGCGAGGAACAAGGCCTGGTCGTGGAAAATTACGAGGAGCTGG
CCGGAGCTATCTTCGGACCGCGTGCCTTCCGCTTCTGTCGCTTTCTGATG
GCGACCATTACGTTGATTTATACGTCTGGGTTTGTCATAGTAATTGGCAG
CAGCTTGAACGACGTCCTCCCGGCCGTGCATCGCGCCGTGTGGTGTGGAT
TGCTGTTTCCGGTGTTGACGATTCTGTCCTGGATCCCCTTCATGAAGGAC
CTGTGGTTTGTGTCGCTCTTGGGATTGGGCACCTACTTGATAGGAGTGGT
GGGCTCGACGATTTACTTTGCCAATCACAACTATGACTCTCCCACTCCTT
CTCCGTGGGAGTGGAGGTGGGAGGGGGCGCCGCATTTTTACGGTGTGGCA
GTGTATTCCTTGGAAGGGATAAATTTGACACTGCCGGTTTCGGCTTCGAT
GAAAAGCCTGCAAAAACCTCCTTATGTGATGACGATGGGCGTGTGCCTCT
TTGCGGGAGTCACGGCATTTTATTCCTCCTATGCGTATGCTGCTGGGCTA
GGCTCGTGTGATATCATCATTCAATGCCTGGGTCGGGGGGCCTTCGTCAA
TATAGTCAGGGTCGCCCTGGCTCTATCCCTCATAGCCACGCATCCTGTGT
ACTTAATTGTTGCTTCGGAGATTTTCGAGCGTGCCTTGTTGGGGGATCCG
CTTGCTACCGTGCCTCCAATTACAGAGGAGGGAGAGCAGGAGGGAGGAGG
GGTGATGCCGGCGGCTGGCAATCAGCTGCACGGCTGTGGGGTTTTACAGG
GGGAGGAGGATGCGAGCAGGAGAAGAACGTCCGAGGGAACCAACGACAGC
AGCCGCCTCATCACCAATGATCCCTTCTTATTCTCTTCCACATGCTCCCT
CCTCCCGTCCTTCCTCCTCACCCAACAAGCCCAAGCTCGCATCATCCGAG
CAATCGAGGTCCTTCTCACTTGCCTCGTCGGCGCCTGTGTTCCTAACCTA
GGGGCTTTCACCTCTCTCATCGGTGCTACTTTTGTGACTCTCATCGGCTT
CGTATTCCCTGCCGCCATGTGGTGGGCTCTGCAGAAAGAGGATGTGCATG
CCTCTTCGTGGGAGAAAGCAAGAGTGTACGGAGTGGCGGGCCTTGTGATT
CTTGCGGGACTGGTTGCAATGGTGGTGGGTACGGTAGAGAGTGTGAGAAA
CATCGCGAAGTAATGAGGAAGAGGGGAGCAAGGTAAAGGGAAGGGAGAGG
TGTGTTGCTCACGAGGTGCAGTGACGAGTGTGTGGCGAGCTGAATCTCCT
GAGTTCTGCATACCTGAGAGGTTGAGGGACGAAGTGAAAGGGGAGGGAAG
GAAGGCATGGGTGCCTGACATGGGAGGAGGAAGAGAGGACGAGGAAAATG
ACAAGAGCGAGACAAAATTATGTACAGCTTTTCAAAGTGGAAAAGTAAAT
CAAAATACGGGTAAGCGATAGGATCAGAGGTCATCTTCGTTTTTCTACCC
CACCTCCCTCCCCATTTCTACTTTCTATGATAACATGTTTCCTCCTTCTC
CTCTCCTAATTCTCCACCTTCCCGTTGTGAGTATCTGTTCTTGAATGGTT
TATTGGCTTTCTAATGATTGTGCTGGAAAGAGTCGGCCACGCAGGCATGT
GCGTATGCAATCTCGTATGACATAGTGCACCCTCCATAGAATGGTGCTTT
TCTTGCTCCAAAACTCTCTCTCTC
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protein sequence of NO05G01750.1

>NO05G01750.1-protein ID=NO05G01750.1-protein|Name=NO05G01750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=542bp
MRQAQRLLIPFLYHYPTTGPPKTMRPVLPTAPPTSLPAITPDSSTCSTTP
LSGVAGYRKLSSENGGTINGTTSPSSQHHNKTSTRIALLIFFKGLFGAGV
LAIPGAFESTGVPLGLLIFLSVSSLCLGTMLMLLRCKELLREEQGLVVEN
YEELAGAIFGPRAFRFCRFLMATITLIYTSGFVIVIGSSLNDVLPAVHRA
VWCGLLFPVLTILSWIPFMKDLWFVSLLGLGTYLIGVVGSTIYFANHNYD
SPTPSPWEWRWEGAPHFYGVAVYSLEGINLTLPVSASMKSLQKPPYVMTM
GVCLFAGVTAFYSSYAYAAGLGSCDIIIQCLGRGAFVNIVRVALALSLIA
THPVYLIVASEIFERALLGDPLATVPPITEEGEQEGGGVMPAAGNQLHGC
GVLQGEEDASRRRTSEGTNDSSRLITNDPFLFSSTCSLLPSFLLTQQAQA
RIIRAIEVLLTCLVGACVPNLGAFTSLIGATFVTLIGFVFPAAMWWALQK
EDVHASSWEKARVYGVAGLVILAGLVAMVVGTVESVRNIAK*
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mRNA from alignment at chr5:477204..480133-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G01750.1 ID=NO05G01750.1|Name=NO05G01750.1|organism=Nannochloropsis oceanica|type=mRNA|length=2930bp|location=Sequence derived from alignment at chr5:477204..480133- (Nannochloropsis oceanica)
GTGACTGTATGGGCCAACGATGGGGTACAGATGGGCCTGTCGTCACGCGA GAAAACCTGAATTAACGAAAAGATGACGAGGCGGGGGATTTCTTGTGTGT CGGATGATTTCATCTGCCAGGATGTCGTGTTTGGACACGATGTTGTGTAG AAGATGATTCATGACTTGATTCTACCCCGTCGCGAACGAGTAGTACAACA GACCCGAAAGACTCTGTGCCTCCCTCCGTCCTCGTCCTCGTTCAGCGACA CACTAATCCGCACGACACACACTAATTGTACAGGCGCACTATCATGGCCA GCACTAACAGCACCACTATGATAAGGTCTAGCAGCGTCCGCTTGACATAA AGCCCGGGTCTCTTACACCTTATGCAACCGGCACAACGGACCCGCATCAT GCGCCGTGGAGTGTATGCTCGATAACGTCCTTCAATGTTGCCCCCCACCG CTAGCTACCGAAGGCACATTTGTGTTTGACGCACGAGCAATCAATGGACC TGCTGTAGGACATTAGCAGCATGCCAGAAGTGAGAGAAGAGCTCACGGCT GCGATAGGAATCCACGAGCCGACTTATCCCGCGGACAACCGCGTGAATCA ACTGCATGTGAATCTTACCACGGGCTGCTTGACAAACAGGAAAACCTTCG TCGCTTGCATACACGCGATAGGTCTTTATCGGCACCTATGCGACAAGCAC AACGTCTTCTCATCCCCTTCCTCTACCATTACCCGACCACAGGACCCCCA AAAACAATGCGTCCCGTTTTGCCCACGGCCCCCCCAACGTCACTTCCCGC CATCACGCCCGACTCGTCCACATGCTCTACCACCCCTTTGTCAGGAGTAG CAGGCTATCGCAAGCTATCAAGTGAAAATGGTGGCACGATCAATGGCACG ACATCCCCATCTTCACAACATCATAACAAAACCAGCACGCGCATTGCGTT GTTGATTTTTTTCAAAGGCCTTTTTGGCGCCGGTGTGTTGGCGATTCCAG GGGCTTTTGAGAGCACGGGGGTCCCCTTGGGCTTGTTGATCTTTCTGTCT GTCTCATCATTGTGTCTTGGGACAATGCTTATGCTGCTGCGTTGCAAGGT AAGGTGAACGTAATTGAAACGGTTTTTCTTGTCGCTTGCTTACCGTACTT TGAGCCCTCCTGTGCCAACTCATGTACTCATCCCTCCCTCCCTCTCTCCC TTAGGAGCTCCTTCGCGAGGAACAAGGCCTGGTCGTGGAAAATTACGAGG AGCTGGCCGGAGCTATCTTCGGACCGCGTGCCTTCCGCTTCTGTCGCTTT CTGATGGCGACCATTACGTTGATTTATACGTCTGGGTTTGTCATAGTAAT TGGCAGCAGCTTGAACGACGTCCTCCCGGCCGTGCATCGCGCCGTGTGGT GTGGATTGCTGTTTCCGGTGTTGACGATTCTGTCCTGGATCCCCTTCATG AAGGACCTGTGGTTTGTGTCGCTCTTGGGATTGGGCACCTACTTGATAGG AGTGGTGGGCTCGACGATTTACTTTGCCAATCACAACTATGACTCTCCCA CTCCTTCTCCGTGGGAGTGGAGGTGGGAGGGGGCGCCGCATTTTTACGGT GTGGCAGTGTATTCCTTGGAAGGGATAAATTTGACACTGCCGGTTTCGGC TTCGATGAAAAGCCTGCAAAAACCTCCTTATGTGATGACGATGGGCGTGT GCCTCTTTGCGGGAGTCACGGCATTTTATTCCTCCTATGCGTATGCTGCT GGGCTAGGCTCGTGTGATATCATCATTCAATGCCTGGGTCGGGGGGCCTT CGTCAATATAGTCAGGGTCGCCCTGGCTCTATCCCTCATAGCCACGCATC CTGTGTACTTAATTGTTGCTTCGGAGATTTTCGAGCGTGCCTTGTTGGGG GATCCGCTTGCTACCGTGCCTCCAATTACAGAGGAGGGAGAGCAGGAGGG AGGAGGGGTGATGCCGGCGGCTGGCAATCAGCTGCACGGCTGTGGGGTTT TACAGGGGGAGGAGGATGCGAGCAGGAGAAGAACGTCCGAGGGAACCAAC GACAGCAGCCGCCTCATCACCAATGATCCCTTCTTATTCTCTTCCACATG CTCCCTCCTCCCGTCCTTCCTCCTCACCCAACAAGCCCAAGCTCGCATCA TCCGAGCAATCGAGGTCCTTCTCACTTGCCTCGTCGGCGCCTGTGTTCCT AACCTAGGGGCTTTCACCTCTCTCATCGGTGCTACTTTTGTGACTCTCAT CGGCTTCGTATTCCCTGCCGCCATGTGGTGGGCTCTGCAGAAAGAGGATG TGCATGCCTCTTCGTGGGAGAAAGCAAGAGTGTACGGAGTGGCGGGCCTT GTGATTCTTGCGGGACTGGTTGCAATGGTGGTGGGTACGGTAGAGAGTGT GAGAAACATCGCGAAGTAATGAGGAAGAGGGGAGCAAGGTAAAGGGAAGG GAGAGGTGTGTTGCTCACGAGGTGCAGTGACGAGTGTGTGGCGAGCTGAA TCTCCTGAGTTCTGCATACCTGAGAGGTTGAGGGACGAAGTGAAAGGGGA GGGAAGGAAGGCATGGGTGCCTGACATGGGAGGAGGAAGAGAGGACGAGG AAAATGACAAGAGCGAGACAAAATTATGTACAGCTTTTCAAAGTGGAAAA GTAAATCAAAATACGGGTAAGCGATAGGATCAGAGGTCATCTTCGTTTTT CTACCCCACCTCCCTCCCCATTTCTACTTTCTATGATAACATGTTTCCTC CTTCTCCTCTCCTAATTCTCCACCTTCCCGTTGTGAGTATCTGTTCTTGA ATGGTTTATTGGCTTTCTAATGATTGTGCTGGAAAGAGTCGGCCACGCAG GCATGTGCGTATGCAATCTCGTATGACATAGTGCACCCTCCATAGAATGG TGCTTTTCTTGCTCCAAAACTCTCTCTCTC
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Coding sequence (CDS) from alignment at chr5:477204..480133-

>NO05G01750.1 ID=NO05G01750.1|Name=NO05G01750.1|organism=Nannochloropsis oceanica|type=CDS|length=1626bp|location=Sequence derived from alignment at chr5:477204..480133- (Nannochloropsis oceanica)
ATGCGACAAGCACAACGTCTTCTCATCCCCTTCCTCTACCATTACCCGAC
CACAGGACCCCCAAAAACAATGCGTCCCGTTTTGCCCACGGCCCCCCCAA
CGTCACTTCCCGCCATCACGCCCGACTCGTCCACATGCTCTACCACCCCT
TTGTCAGGAGTAGCAGGCTATCGCAAGCTATCAAGTGAAAATGGTGGCAC
GATCAATGGCACGACATCCCCATCTTCACAACATCATAACAAAACCAGCA
CGCGCATTGCGTTGTTGATTTTTTTCAAAGGCCTTTTTGGCGCCGGTGTG
TTGGCGATTCCAGGGGCTTTTGAGAGCACGGGGGTCCCCTTGGGCTTGTT
GATCTTTCTGTCTGTCTCATCATTGTGTCTTGGGACAATGCTTATGCTGC
TGCGTTGCAAGGAGCTCCTTCGCGAGGAACAAGGCCTGGTCGTGGAAAAT
TACGAGGAGCTGGCCGGAGCTATCTTCGGACCGCGTGCCTTCCGCTTCTG
TCGCTTTCTGATGGCGACCATTACGTTGATTTATACGTCTGGGTTTGTCA
TAGTAATTGGCAGCAGCTTGAACGACGTCCTCCCGGCCGTGCATCGCGCC
GTGTGGTGTGGATTGCTGTTTCCGGTGTTGACGATTCTGTCCTGGATCCC
CTTCATGAAGGACCTGTGGTTTGTGTCGCTCTTGGGATTGGGCACCTACT
TGATAGGAGTGGTGGGCTCGACGATTTACTTTGCCAATCACAACTATGAC
TCTCCCACTCCTTCTCCGTGGGAGTGGAGGTGGGAGGGGGCGCCGCATTT
TTACGGTGTGGCAGTGTATTCCTTGGAAGGGATAAATTTGACACTGCCGG
TTTCGGCTTCGATGAAAAGCCTGCAAAAACCTCCTTATGTGATGACGATG
GGCGTGTGCCTCTTTGCGGGAGTCACGGCATTTTATTCCTCCTATGCGTA
TGCTGCTGGGCTAGGCTCGTGTGATATCATCATTCAATGCCTGGGTCGGG
GGGCCTTCGTCAATATAGTCAGGGTCGCCCTGGCTCTATCCCTCATAGCC
ACGCATCCTGTGTACTTAATTGTTGCTTCGGAGATTTTCGAGCGTGCCTT
GTTGGGGGATCCGCTTGCTACCGTGCCTCCAATTACAGAGGAGGGAGAGC
AGGAGGGAGGAGGGGTGATGCCGGCGGCTGGCAATCAGCTGCACGGCTGT
GGGGTTTTACAGGGGGAGGAGGATGCGAGCAGGAGAAGAACGTCCGAGGG
AACCAACGACAGCAGCCGCCTCATCACCAATGATCCCTTCTTATTCTCTT
CCACATGCTCCCTCCTCCCGTCCTTCCTCCTCACCCAACAAGCCCAAGCT
CGCATCATCCGAGCAATCGAGGTCCTTCTCACTTGCCTCGTCGGCGCCTG
TGTTCCTAACCTAGGGGCTTTCACCTCTCTCATCGGTGCTACTTTTGTGA
CTCTCATCGGCTTCGTATTCCCTGCCGCCATGTGGTGGGCTCTGCAGAAA
GAGGATGTGCATGCCTCTTCGTGGGAGAAAGCAAGAGTGTACGGAGTGGC
GGGCCTTGTGATTCTTGCGGGACTGGTTGCAATGGTGGTGGGTACGGTAG
AGAGTGTGAGAAACATCGCGAAGTAA
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Synonyms
Publications