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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr5 | genome | chr5:466962..470207 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G01710.1 vs.
Match: EWM28196.1 (glucose-methanol-choline oxidoreductase [Nannochloropsis gaditana]) HSP 1 Score: 619.4 bits (1596), Expect = 9.300e-174 Identity = 310/465 (66.67%), Postives = 365/465 (78.49%), Query Frame = 0
Query: 9 REGGGEKEDFGKAWSWKEVLPYFVKSEDYAVKGAKDEM-----CGDVSTTAAAAATGVVHGVGGEWRVERQRLSWELLDKFRDACAEHGIPKVTDFNKGFNEGSSYFHVNQWNGIRWNTSKAWLHPITTHRSNLTVRTGVHVLKVILDPAGTTALGVEFAHFTSST-VIEKAYAGLETILAAGAVGSPHLLQLSGIGPVDALRAVGVPVLHPLPGVGANLQDHLQLRTVFTVKNVETLNEQYARWWGRVKMGWAYLRHRRGPLSMAPSQVGVFCKSDNTQSRANLQYHVQPLSLDKFGEPLHAFPAFTASVCHLRPSSRGHILLRDSDPRSPPLIQPNYLSTSEDRAIAADAIRLTRRLVLESKALAPFSPQEYIPGSRYASQEELEAAAGRVGTTIFHPAGTCKMGRGDNAMAVLDGRMKVRGVRRLRVCDTSVMPRITSGNTNSPTVMIAEKGSDFINQEHGT 468
R+ + + G+ WSW+ VLP F KSED+A + E+ GD+ ++ + HGVGGEWRVE+QRLSW++LD FRDAC E GIPKV DFN G N GSSYFHVNQ G RWNTSKAWLHPI R+NLTV T VHVLKV+LD + +ALGVEFA T V+E+AYAGLETILAAGAVGSPHLLQLSG+GP LR+ VPV H L GVGANLQDHLQLR VF + + TLN++YA WWGRVKMG YL RRGPLSMAPSQVGVFCKS+ T+ R +L++HVQPLSLD+FGEPLH FPAFTASVCHL+P+SRG +LLR+ DPR+PP IQPNYL+T++DRA+AA A+RLTRRLVL S+A PF P+EY PG SQ ELE AAGRVGTTIFHPAGTCKMGR D+ +AVLD +++VRG+ RLRVCDTS MP ITSGNT+SPT+MIAEK SDF++ HGT
Sbjct: 173 RKESAKDGENGEVWSWRGVLPDFTKSEDFAAGASIQEVERGSEGGDLYKSSPPKQDAI-HGVGGEWRVEKQRLSWKVLDTFRDACEEQGIPKVEDFNGGNNFGSSYFHVNQRGGWRWNTSKAWLHPIMGRRANLTVLTHVHVLKVLLDKSNGSALGVEFARSEVGTGVVERAYAGLETILAAGAVGSPHLLQLSGVGPPAPLRSADVPVKHALSGVGANLQDHLQLRMVFRISGLPTLNDEYASWWGRVKMGVEYLWDRRGPLSMAPSQVGVFCKSEATRRRPDLEFHVQPLSLDRFGEPLHPFPAFTASVCHLQPTSRGSVLLRNRDPRAPPRIQPNYLATAKDRAVAARALRLTRRLVLGSRAFLPFKPEEYAPGIACQSQAELEEAAGRVGTTIFHPAGTCKMGRADDPLAVLDAKLRVRGIERLRVCDTSAMPVITSGNTSSPTLMIAEKASDFLHAAHGT 636
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G01710.1 ID=NO05G01710.1|Name=NO05G01710.1|organism=Nannochloropsis oceanica|type=mRNA|length=2995bp
CTTTGAGCGGCGAGTGATGTTGCTTTTAATTTACACTACATATGTTATTA
GGATGGCGATTGGAATTTTACCGAGGCTCCATCATGAATGCGGTTGGAAA
TTAGGATACTCTTATCTAGAGGTGGTCACTGGTACGACTATAACTCAACA
AGGCTTTACGTCGAACCTGGAGGACTCAGTTGAGTCCTCAACTTAACCTT
TTAACTATTTTTGATGAGCACGTAGACTCTGGCCAAAATGCGCCGCGTCT
AAACCACCACCTCGTGGGGTCGTTGTCCACTAAATCCTATCCCTTACAGA
GTGCCATCAGGAGAATGTACGGGTCATGATTATGGCGATTTACAGTGAGT
CTTAGTGCTCCGATGTACCTTTCCTTTTGCTTGCTTTCAAAAACAAGAAT
AACAAACCATACCACACTGCGGCGGCCCATATCCATAGTGTGAATGACGT
TCACTGAGTGTGCATCTATCTACCATGCGTAAATAGCCAAGAATAGGGCT
CAAAATTCATGACTACAGATAGACTGGAAAGTATATGGTCATTTTGGACG
TCTTTTTATCAAATTGTGGCCACGTCTTTGAGACTGGGCCAGGAACCCTG
GGGCAGAGGAGGCTTCGACAAGCAAGGTGGACTTGAGGTGCCCGTGGTAT
GAAACAAAAAGTGACTCTCACGGCCTCGATTCGGACACATGTATAGCGAC
TCTTGTTGGGACAGCCTTACAACTTTTGATTTCATGGCTAGCTCCTTTTC
CTGGGAGCGCGGGTTCTCCTTTTGGTGGGGTTGCTTTGGTTGCACTTGCT
CTCTCTCTTGGTTTTCACACTCGTGACACAACGAACCATACAGCAAAACA
AGCCAAGCAAAAGAACATGCATTAGCGACAGCAAGGATTACAATGATGAT
AGCTCTACTACCGCGCGGGCGCCGGCTCTTGCTTTGCTGCTGGTCCAAGA
TCCCAGGGCATATCATACCCTCCAGGACATCCGTTATGAAGGCCGCCTCT
TGGTCTTCCTTGTCCGCCAACTACGACTATGTCATTGTTGGTGGAGGCAG
TGCCGGCTGCGTGCTCGCAAATCGTCTCTCGGTCAATCCACGCGTCAAAG
TCCTGCTACTCGAAGCGGGTGGGGATGACCGCTTCATCCCATTTGTCCAT
GTGCCGGTGGGATACCTGTGGAGCATCGCCAACCCCAAGGTCGACTGGTG
CTTGAAAACGGAGCCCGTCCCAGGCCTGCATGGCCGCACGTTAGCCTACC
CGAGGGGCAAGGTCTTAGGTGGCTGCTCTTCAATTAATGGCATGATATAT
ATGCGTGGACAAGCGGAGGATTACGACGGATGGGCAGGGGAGATTGGGGA
GGGAGGGAGGGAGGGGGGGAAAAGGAGGATTTTGGAAAGGCCTGGTCCTG
GAAGGAGGTGTTGCCATACTTTGTCAAGTCGGAGGATTACGCCGTTAAGG
GCGCAAAAGACGAAATGTGTGGTGATGTCTCCACTACTGCTGCTGCTGCC
GCAACAGGGGTTGTGCATGGTGTAGGAGGGGAGTGGCGGGTGGAGAGACA
AAGGTTGAGTTGGGAGTTGCTTGATAAATTTCGTGATGCCTGTGCCGAGC
ACGGCATTCCGAAGGTGACTGATTTCAATAAAGGGTTCAATGAGGGCTCA
AGCTATTTTCACGTGAATCAGTGGAACGGGATCAGATGGAACACGAGCAA
GGCCTGGCTCCACCCTATTACTACGCACCGGTCCAATCTCACTGTTCGTA
CCGGCGTGCATGTCCTCAAAGTCATCTTGGATCCCGCCGGGACTACTGCG
CTCGGCGTCGAATTCGCACATTTTACCAGCAGCACGGTCATAGAGAAGGC
ATATGCAGGGCTGGAGACTATATTAGCCGCAGGGGCGGTTGGCAGCCCTC
ATTTACTCCAACTGAGCGGGATCGGCCCTGTGGACGCTCTGAGGGCTGTG
GGCGTGCCCGTTCTACACCCCCTCCCTGGTGTCGGCGCAAACTTACAAGA
CCATCTACAGCTACGCACGGTGTTCACGGTCAAGAACGTCGAAACGCTAA
ACGAACAATACGCCCGATGGTGGGGTCGTGTCAAAATGGGATGGGCCTAC
CTCCGGCACCGTCGAGGCCCCCTAAGCATGGCTCCCTCCCAAGTGGGCGT
CTTTTGCAAGAGCGACAATACCCAATCTCGAGCCAACCTCCAATATCACG
TCCAGCCCCTCTCACTCGATAAGTTTGGGGAGCCTTTGCATGCTTTCCCT
GCCTTTACTGCGTCCGTCTGTCATCTCCGTCCGAGCTCCCGTGGCCACAT
CCTTTTGCGTGACTCCGATCCTCGATCCCCTCCCTTGATCCAGCCAAATT
ATTTGTCGACGTCAGAAGATAGGGCGATCGCCGCTGACGCTATCAGATTA
ACGAGAAGGTTAGTTTTGGAGTCCAAAGCTCTAGCACCCTTTTCACCACA
AGAATATATCCCGGGCTCTCGGTACGCAAGTCAGGAAGAGCTGGAGGCAG
CAGCGGGGAGGGTTGGAACGACGATTTTCCACCCGGCGGGGACATGCAAA
ATGGGGCGGGGAGATAATGCAATGGCGGTCCTGGATGGACGGATGAAGGT
GAGGGGGGTGAGGAGGCTTAGAGTGTGCGACACCAGTGTCATGCCGCGGA
TCACTAGTGGGAATACGAATAGCCCGACGGTGATGATTGCGGAGAAGGGG
AGCGACTTTATCAATCAGGAGCATGGAACATGGGGGGGTCAGGGGTAAGA
AAGGGTATAGAGAGAAGATGCGAATGTGTATCTGTGTATCTGTGCGAGGT
TACTAGGGTGACTAGTGGCAATGCAATTAGCCAATCGGTGATTGTGGAGG
AACGGAAAGACGTCACAATCGGTTAATATTGCGTAGACAACTTGTTTGTA
AGCGACGTACAAAAGTGTACAGTGAATTTTCATAAATACCATCAAAAAAG
AAGCACGTTAGTTGGCATGCAATATAATAAAAGGAAGGATTTGAC back to topprotein sequence of NO05G01710.1 >NO05G01710.1-protein ID=NO05G01710.1-protein|Name=NO05G01710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=473bp
MGRGDWGGREGGGEKEDFGKAWSWKEVLPYFVKSEDYAVKGAKDEMCGDV
STTAAAAATGVVHGVGGEWRVERQRLSWELLDKFRDACAEHGIPKVTDFN
KGFNEGSSYFHVNQWNGIRWNTSKAWLHPITTHRSNLTVRTGVHVLKVIL
DPAGTTALGVEFAHFTSSTVIEKAYAGLETILAAGAVGSPHLLQLSGIGP
VDALRAVGVPVLHPLPGVGANLQDHLQLRTVFTVKNVETLNEQYARWWGR
VKMGWAYLRHRRGPLSMAPSQVGVFCKSDNTQSRANLQYHVQPLSLDKFG
EPLHAFPAFTASVCHLRPSSRGHILLRDSDPRSPPLIQPNYLSTSEDRAI
AADAIRLTRRLVLESKALAPFSPQEYIPGSRYASQEELEAAAGRVGTTIF
HPAGTCKMGRGDNAMAVLDGRMKVRGVRRLRVCDTSVMPRITSGNTNSPT
VMIAEKGSDFINQEHGTWGGQG* back to topmRNA from alignment at chr5:466962..470207- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G01710.1 ID=NO05G01710.1|Name=NO05G01710.1|organism=Nannochloropsis oceanica|type=mRNA|length=3246bp|location=Sequence derived from alignment at chr5:466962..470207- (Nannochloropsis oceanica)
CTTTGAGCGGCGAGTGATGTTGCTTTTAATTTACACTACATATGTTATTA
GGATGGCGATTGGAATTTTACCGAGGCTCCATCATGAATGCGGTTGGAAA
TTAGGATACTCTTATCTAGAGGTGGTCACTGGTACGACTATAACTCAACA
AGGCTTTACGTCGAACCTGGAGGACTCAGTTGAGTCCTCAACTTAACCTT
TTAACTATTTTTGATGAGCACGTAGACTCTGGCCAAAATGCGCCGCGTCT
AAACCACCACCTCGTGGGGTCGTTGTCCACTAAATCCTATCCCTTACAGA
GTGCCATCAGGAGAATGTACGGGTCATGATTATGGCGATTTACAGTGAGT
CTTAGTGCTCCGATGTACCTTTCCTTTTGCTTGCTTTCAAAAACAAGAAT
AACAAACCATACCACACTGCGGCGGCCCATATCCATAGTGTGAATGACGT
TCACTGAGTGTGCATCTATCTACCATGCGTAAATAGCCAAGAATAGGGCT
CAAAATTCATGACTACAGATAGACTGGAAAGTATATGGTCATTTTGGACG
TCTTTTTATCAAATTGTGGCCACGTCTTTGAGACTGGGCCAGGAACCCTG
GGGCAGAGGAGGCTTCGACAAGCAAGGTGGACTTGAGGTGCCCGTGGTAT
GAAACAAAAAGTGACTCTCACGGCCTCGATTCGGACACATGTATAGCGAC
TCTTGTTGGGACAGCCTTACAACTTTTGATTTCATGGCTAGCTCCTTTTC
CTGGGAGCGCGGGTTCTCCTTTTGGTGGGGTTGCTTTGGTTGCACTTGCT
CTCTCTCTTGGTTTTCACACTCGTGACACAACGAACCATACAGCAAAACA
AGCCAAGCAAAAGAACATGCATTAGCGACAGCAAGGATTACAATGATGAT
AGCTCTACTACCGCGCGGGCGCCGGCTCTTGCTTTGCTGCTGGTCCAAGA
TCCCAGGGCATATCATACCCTCCAGGACATCCGTTATGAAGGCCGCCTCT
TGGTCTTCCTTGTCCGCCAACTACGACTATGTCATTGTTGGTGGAGGCAG
TGCCGGCTGCGTGCTCGCAAATCGTCTCTCGGTCAATCCACGCGTCAAAG
TCCTGCTACTCGAAGCGGGTGGGGATGACCGCTTCATCCCATTTGTCCAT
GTGCCGGTGGGATACCTGTGGAGGTGCGTATGCGGCTCCTATGCCTTTTT
CAGCCAACAAAGGCACGAGTTCATGGTCAATTTTCATTTCTTATTTCCGC
TGAAAAACCCTTTCTTTTGTGTTCTCCTCCCTCCTCCGCAGCATCGCCAA
CCCCAAGGTCGACTGGTGCTTGAAAACGGAGCCCGTCCCAGGCCTGCATG
GCCGCACGTTAGCCTACCCGAGGGGCAAGGTCTTAGGTGGCTGCTCTTCA
ATTAATGGCATGATATATATGCGTGGACAAGCGGAGGATTACGACGGATG
GGCAGGGGAGATTGGGGAGGGAGGGAGGGAGGGGGGGAAAAGGAGGATTT
TGGAAAGGCCTGGTCCTGGAAGGAGGTGTTGCCATACTTTGTCAAGTCGG
AGGATTACGCCGTTAAGGGCGCAAAAGACGAAATGTGTGGTGATGTCTCC
ACTACTGCTGCTGCTGCCGCAACAGGGGTTGTGCATGGTGTAGGAGGGGA
GTGGCGGGTGGAGAGACAAAGGTTGAGTTGGGAGTTGCTTGATAAATTTC
GTGATGCCTGTGCCGAGCACGGCATTCCGAAGGTGACTGATTTCAATAAA
GGGTTCAATGAGGGCTCAAGCTATTTTCACGTGAATCAGTGGAACGGGAT
CAGATGGAACACGAGCAAGGTACGAATGAAAAACGTGAGGGAAGGGGTAG
GAAGGGAGGGAGGGAGGAAAGAATGGAGAAATAACGCCGGTCCATATTCC
ATTCACTTACTTTCCCGCATCCCCCCCCTTCTTCCCTCCCTTTCTCCCCT
AGGCCTGGCTCCACCCTATTACTACGCACCGGTCCAATCTCACTGTTCGT
ACCGGCGTGCATGTCCTCAAAGTCATCTTGGATCCCGCCGGGACTACTGC
GCTCGGCGTCGAATTCGCACATTTTACCAGCAGCACGGTCATAGAGAAGG
CATATGCAGGGCTGGAGACTATATTAGCCGCAGGGGCGGTTGGCAGCCCT
CATTTACTCCAACTGAGCGGGATCGGCCCTGTGGACGCTCTGAGGGCTGT
GGGCGTGCCCGTTCTACACCCCCTCCCTGGTGTCGGCGCAAACTTACAAG
ACCATCTACAGCTACGCACGGTGTTCACGGTCAAGAACGTCGAAACGCTA
AACGAACAATACGCCCGATGGTGGGGTCGTGTCAAAATGGGATGGGCCTA
CCTCCGGCACCGTCGAGGCCCCCTAAGCATGGCTCCCTCCCAAGTGGGCG
TCTTTTGCAAGAGCGACAATACCCAATCTCGAGCCAACCTCCAATATCAC
GTCCAGCCCCTCTCACTCGATAAGTTTGGGGAGCCTTTGCATGCTTTCCC
TGCCTTTACTGCGTCCGTCTGTCATCTCCGTCCGAGCTCCCGTGGCCACA
TCCTTTTGCGTGACTCCGATCCTCGATCCCCTCCCTTGATCCAGCCAAAT
TATTTGTCGACGTCAGAAGATAGGGCGATCGCCGCTGACGCTATCAGATT
AACGAGAAGGTTAGTTTTGGAGTCCAAAGCTCTAGCACCCTTTTCACCAC
AAGAATATATCCCGGGCTCTCGGTACGCAAGTCAGGAAGAGCTGGAGGCA
GCAGCGGGGAGGGTTGGAACGACGATTTTCCACCCGGCGGGGACATGCAA
AATGGGGCGGGGAGATAATGCAATGGCGGTCCTGGATGGACGGATGAAGG
TGAGGGGGGTGAGGAGGCTTAGAGTGTGCGACACCAGTGTCATGCCGCGG
ATCACTAGTGGGAATACGAATAGCCCGACGGTGATGATTGCGGAGAAGGG
GAGCGACTTTATCAATCAGGAGCATGGAACATGGGGGGGTCAGGGGTAAG
AAAGGGTATAGAGAGAAGATGCGAATGTGTATCTGTGTATCTGTGCGAGG
TTACTAGGGTGACTAGTGGCAATGCAATTAGCCAATCGGTGATTGTGGAG
GAACGGAAAGACGTCACAATCGGTTAATATTGCGTAGACAACTTGTTTGT
AAGCGACGTACAAAAGTGTACAGTGAATTTTCATAAATACCATCAAAAAA
GAAGCACGTTAGTTGGCATGCAATATAATAAAAGGAAGGATTTGAC back to topCoding sequence (CDS) from alignment at chr5:466962..470207- >NO05G01710.1 ID=NO05G01710.1|Name=NO05G01710.1|organism=Nannochloropsis oceanica|type=CDS|length=1419bp|location=Sequence derived from alignment at chr5:466962..470207- (Nannochloropsis oceanica)
ATGGGCAGGGGAGATTGGGGAGGGAGGGAGGGAGGGGGGGAAAAGGAGGA
TTTTGGAAAGGCCTGGTCCTGGAAGGAGGTGTTGCCATACTTTGTCAAGT
CGGAGGATTACGCCGTTAAGGGCGCAAAAGACGAAATGTGTGGTGATGTC
TCCACTACTGCTGCTGCTGCCGCAACAGGGGTTGTGCATGGTGTAGGAGG
GGAGTGGCGGGTGGAGAGACAAAGGTTGAGTTGGGAGTTGCTTGATAAAT
TTCGTGATGCCTGTGCCGAGCACGGCATTCCGAAGGTGACTGATTTCAAT
AAAGGGTTCAATGAGGGCTCAAGCTATTTTCACGTGAATCAGTGGAACGG
GATCAGATGGAACACGAGCAAGGCCTGGCTCCACCCTATTACTACGCACC
GGTCCAATCTCACTGTTCGTACCGGCGTGCATGTCCTCAAAGTCATCTTG
GATCCCGCCGGGACTACTGCGCTCGGCGTCGAATTCGCACATTTTACCAG
CAGCACGGTCATAGAGAAGGCATATGCAGGGCTGGAGACTATATTAGCCG
CAGGGGCGGTTGGCAGCCCTCATTTACTCCAACTGAGCGGGATCGGCCCT
GTGGACGCTCTGAGGGCTGTGGGCGTGCCCGTTCTACACCCCCTCCCTGG
TGTCGGCGCAAACTTACAAGACCATCTACAGCTACGCACGGTGTTCACGG
TCAAGAACGTCGAAACGCTAAACGAACAATACGCCCGATGGTGGGGTCGT
GTCAAAATGGGATGGGCCTACCTCCGGCACCGTCGAGGCCCCCTAAGCAT
GGCTCCCTCCCAAGTGGGCGTCTTTTGCAAGAGCGACAATACCCAATCTC
GAGCCAACCTCCAATATCACGTCCAGCCCCTCTCACTCGATAAGTTTGGG
GAGCCTTTGCATGCTTTCCCTGCCTTTACTGCGTCCGTCTGTCATCTCCG
TCCGAGCTCCCGTGGCCACATCCTTTTGCGTGACTCCGATCCTCGATCCC
CTCCCTTGATCCAGCCAAATTATTTGTCGACGTCAGAAGATAGGGCGATC
GCCGCTGACGCTATCAGATTAACGAGAAGGTTAGTTTTGGAGTCCAAAGC
TCTAGCACCCTTTTCACCACAAGAATATATCCCGGGCTCTCGGTACGCAA
GTCAGGAAGAGCTGGAGGCAGCAGCGGGGAGGGTTGGAACGACGATTTTC
CACCCGGCGGGGACATGCAAAATGGGGCGGGGAGATAATGCAATGGCGGT
CCTGGATGGACGGATGAAGGTGAGGGGGGTGAGGAGGCTTAGAGTGTGCG
ACACCAGTGTCATGCCGCGGATCACTAGTGGGAATACGAATAGCCCGACG
GTGATGATTGCGGAGAAGGGGAGCGACTTTATCAATCAGGAGCATGGAAC
ATGGGGGGGTCAGGGGTAA back to top
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