NO05G01700.1, NO05G01700.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G01700.1
Unique NameNO05G01700.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1864
Alignment locationchr5:464982..466946 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:464982..466946 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO05G01700.1 vs.
Match: EWM28184.1 (dual specificity protein phosphatase 15 [Nannochloropsis gaditana])

HSP 1 Score: 328.9 bits (842), Expect = 1.600e-86
Identity = 172/295 (58.31%), Postives = 211/295 (71.53%), Query Frame = 0
Query:    1 MGGEPSKILHGPPPIPTTRSSSNNDNDEPRLPSRPTLLHGGANVLQDPSFYTTYGVTHALSICQAKPPPTAGLTMVKHINESDLPHSDLLPHFEDFIFFIHNARVGGGVVYVHCAAGVSRSTTAVCSYLMCIHALSFKDALDFIRTRREVACPNPGFVRQLQAFEKDPFTIQMRARIRNAFPHDVALVKADLLEIRQALAERSARLGRDEKALILDPRSRILEMIHQMQEQQAGAAEGMRAGEDDESHEQCRLP-MKPPPAGSSVMAMRLGDKGYGLTWLEEEKDHHTRMEEMPR 295
            MGGEPSKILH          S   DND  +  SRP+LLHGGANVLQD  F+ + GVT ALSICQA+PP + GL  +KH+NESDLP ++LLP+FE+F+ FIH ARV GG VYVHCAAGVSRSTTA+CSYL+C+H L+FKDALDFIRTRREVACPNPGFVRQLQ FE+D  T+ +RARIR+AFP D ALV+ DL EI+ ALAER  RLGR E+ L  DPR R+L  + Q +E+      GM  G+DD  HE  R+  +   P  +SV     G++ +GLTW+ EE+D   R ++  R
Sbjct:    1 MGGEPSKILH---------DSLRRDNDGDQTRSRPSLLHGGANVLQDAEFFASNGVTCALSICQARPPASMGLQSIKHVNESDLPQTNLLPYFEEFVNFIHAARVNGGCVYVHCAAGVSRSTTALCSYLICVHGLTFKDALDFIRTRREVACPNPGFVRQLQFFEQDANTVTLRARIRSAFPDDSALVEGDLNEIKDALAERRNRLGRGERLLSSDPRHRLLNYLQQRREEATQGISGMEDGDDD--HEPSRVSVVAEAPCETSVAP---GEEDWGLTWVAEERDEQPRAKKPSR 281          
The following BLAST results are available for this feature:
BLAST of NO05G01700.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28184.11.600e-8658.31dual specificity protein phosphatase 15 [Nannochlo... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G01700NO05G01700Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G01700.1NO05G01700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G01700.1.cds1NO05G01700.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G01700.1.cds2NO05G01700.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G01700.1 ID=NO05G01700.1|Name=NO05G01700.1|organism=Nannochloropsis oceanica|type=mRNA|length=1864bp
TGCCTGCGGTGGGAGGCATGGCTGAGTATGAATGGTGGGCAAGAGTAGGG
ACAAGTGAGAAATGAACGTAGAATGCTACGGCAGAATTTCCAGGTCATGG
TGCTGGGTGTGGATGATAGTTGTTCCCCCTGAGACAAGGCTGAAGGGCAT
CGCCGAGATCGATTTCCGCGAGAGGCCGGCACGCCGTCGTGCAACTTCTC
TTACCCCCAAAAAGTGTCTGTGACTTTCTGCCTCCATTTCGCCCACGACA
CCTCACAATCAACTCCTCACACTCTAACCCGCTCCCCGATACAAATTAGT
AGGGGGCGCGTTCAGGACCTTAGGCGGGCACTGACAGCCACCCCGGTGAC
CGACTGCGTCTATCCTCCCGGCGCATTCGTGTCGTCATCATCACCCTCGC
CCACGCCTACCCACCAACCGCCCCTACAAGCTACAATAATGGGAGGTGAA
CCCTCCAAGATCCTGCACGGGCCCCCACCGATCCCCACCACGAGAAGCAG
CAGCAATAATGACAACGACGAGCCGCGATTGCCCTCGCGCCCCACTCTCC
TTCACGGGGGAGCAAACGTTTTGCAAGACCCATCCTTTTACACCACATAT
GGAGTGACACACGCTCTCTCGATATGCCAAGCCAAGCCGCCACCGACCGC
GGGTCTGACGATGGTGAAGCACATCAATGAAAGCGACCTGCCGCACAGTG
ATCTGCTGCCTCATTTCGAGGATTTTATTTTTTTTATCCACAACGCACGC
GTTGGTGGAGGCGTAGTCTACGTGCACTGCGCCGCCGGGGTCAGTCGATC
CACCACAGCTGTCTGCTCCTACTTGATGTGCATCCACGCCCTCTCCTTCA
AAGATGCCCTCGACTTCATCCGCACCCGTCGCGAAGTGGCTTGCCCCAAC
CCTGGCTTTGTCAGACAACTTCAAGCATTTGAAAAAGATCCATTCACCAT
TCAAATGCGTGCCCGTATCCGCAACGCCTTCCCTCATGACGTCGCTCTCG
TCAAAGCCGACCTTCTCGAAATCAGACAAGCACTCGCAGAGCGTTCCGCC
AGGCTAGGAAGAGACGAAAAAGCCCTGATCCTTGATCCTCGAAGCCGAAT
ATTGGAAATGATTCACCAGATGCAAGAGCAGCAGGCAGGTGCGGCGGAAG
GGATGAGGGCAGGGGAGGATGATGAGAGTCACGAGCAGTGCCGGTTGCCA
ATGAAGCCTCCCCCGGCGGGGTCGTCCGTGATGGCGATGAGGCTGGGGGA
TAAGGGGTATGGATTGACATGGTTGGAGGAGGAGAAGGACCATCACACCC
GAATGGAGGAGATGCCCCGATGAATGAGGTGTCAGGGAGGAGGGAGGGCG
AGTCGGAGAGGGGGAGTGAAGCTGCGTAGTGTGTGTATGTACGTTTTCCT
TAGATTTATGTCGACCGATCTTGACAGAGTGTCCGACAAAACAATACATT
TTATAATATTTCATCATGGCAATTTCATAAGATAAAAGTGGCGAGACAAG
TAATTCTTCGAACATGACGAGGAGGCTGGGAAGGAGGGAGAAAGGGAAGG
GGACGAGAAATAGACCTCTATGTCAAGGGCACAACCCTTTATTTTCTTAG
ACAAAATTTAACCTGTTAGATATGGGCTGCAAGTGGTAAACACTAAGCGT
ACGGCCGCGAAGGCTTCCACTGTTTAAAAGCATTATACAAAGAAAGAACG
AAAAAGAGGAAGAAGAAGGTGATAGAGGTGAAGAAGAAGAAGGCGAAGGC
GAAGAAGAATCTGCACGATGGGATAAATGATCTCTTTTCTAGCTACCGCA
CGGCCCGTGCAAGCTTCATAAAGATGTAAAAGGCAAAGTATAAGACGAGG
AAAGGGTTCGAAGC
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protein sequence of NO05G01700.1

>NO05G01700.1-protein ID=NO05G01700.1-protein|Name=NO05G01700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=295bp
MGGEPSKILHGPPPIPTTRSSSNNDNDEPRLPSRPTLLHGGANVLQDPSF
YTTYGVTHALSICQAKPPPTAGLTMVKHINESDLPHSDLLPHFEDFIFFI
HNARVGGGVVYVHCAAGVSRSTTAVCSYLMCIHALSFKDALDFIRTRREV
ACPNPGFVRQLQAFEKDPFTIQMRARIRNAFPHDVALVKADLLEIRQALA
ERSARLGRDEKALILDPRSRILEMIHQMQEQQAGAAEGMRAGEDDESHEQ
CRLPMKPPPAGSSVMAMRLGDKGYGLTWLEEEKDHHTRMEEMPR*
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mRNA from alignment at chr5:464982..466946+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G01700.1 ID=NO05G01700.1|Name=NO05G01700.1|organism=Nannochloropsis oceanica|type=mRNA|length=1965bp|location=Sequence derived from alignment at chr5:464982..466946+ (Nannochloropsis oceanica)
TGCCTGCGGTGGGAGGCATGGCTGAGTATGAATGGTGGGCAAGAGTAGGG ACAAGTGAGAAATGAACGTAGAATGCTACGGCAGAATTTCCAGGTCATGG TGCTGGGTGTGGATGATAGTTGTTCCCCCTGAGACAAGGCTGAAGGGCAT CGCCGAGATCGATTTCCGCGAGAGGCCGGCACGCCGTCGTGCAACTTCTC TTACCCCCAAAAAGTGTCTGTGACTTTCTGCCTCCATTTCGCCCACGACA CCTCACAATCAACTCCTCACACTCTAACCCGCTCCCCGATACAAATTAGT AGGGGGCGCGTTCAGGACCTTAGGCGGGCACTGACAGCCACCCCGGTGAC CGACTGCGTCTATCCTCCCGGCGCATTCGTGTCGTCATCATCACCCTCGC CCACGCCTACCCACCAACCGCCCCTACAAGCTACAATAATGGGAGGTGAA CCCTCCAAGATCCTGCACGGGCCCCCACCGATCCCCACCACGAGAAGCAG CAGCAATAATGACAACGACGAGCCGCGATTGCCCTCGCGCCCCACTCTCC TTCACGGGGGAGCAAACGTTTTGCAAGACCCATCCTTTTACACCACATAT GGAGTGACACACGCTCTCTCGATATGCCAAGCCAAGCCGCCACCGACCGC GGGTCTGACGATGGTGAAGCACATCAATGAAAGCGACCTGCCGCACAGTG ATCTGCTGCCTCATTTCGAGGATTTTATTTTTTTTATCCACAACGCACGC GTTGGTGGAGGCGTAGTCTACGTGTAAGTATGCAAAGCTCCAGTTTTTTC TCCGCTGCAATATCGAGCACAGCTGTCTCTTGTTTAGACTTGTCGTCTCC TCATTCATCACAACGCACATACAGGCACTGCGCCGCCGGGGTCAGTCGAT CCACCACAGCTGTCTGCTCCTACTTGATGTGCATCCACGCCCTCTCCTTC AAAGATGCCCTCGACTTCATCCGCACCCGTCGCGAAGTGGCTTGCCCCAA CCCTGGCTTTGTCAGACAACTTCAAGCATTTGAAAAAGATCCATTCACCA TTCAAATGCGTGCCCGTATCCGCAACGCCTTCCCTCATGACGTCGCTCTC GTCAAAGCCGACCTTCTCGAAATCAGACAAGCACTCGCAGAGCGTTCCGC CAGGCTAGGAAGAGACGAAAAAGCCCTGATCCTTGATCCTCGAAGCCGAA TATTGGAAATGATTCACCAGATGCAAGAGCAGCAGGCAGGTGCGGCGGAA GGGATGAGGGCAGGGGAGGATGATGAGAGTCACGAGCAGTGCCGGTTGCC AATGAAGCCTCCCCCGGCGGGGTCGTCCGTGATGGCGATGAGGCTGGGGG ATAAGGGGTATGGATTGACATGGTTGGAGGAGGAGAAGGACCATCACACC CGAATGGAGGAGATGCCCCGATGAATGAGGTGTCAGGGAGGAGGGAGGGC GAGTCGGAGAGGGGGAGTGAAGCTGCGTAGTGTGTGTATGTACGTTTTCC TTAGATTTATGTCGACCGATCTTGACAGAGTGTCCGACAAAACAATACAT TTTATAATATTTCATCATGGCAATTTCATAAGATAAAAGTGGCGAGACAA GTAATTCTTCGAACATGACGAGGAGGCTGGGAAGGAGGGAGAAAGGGAAG GGGACGAGAAATAGACCTCTATGTCAAGGGCACAACCCTTTATTTTCTTA GACAAAATTTAACCTGTTAGATATGGGCTGCAAGTGGTAAACACTAAGCG TACGGCCGCGAAGGCTTCCACTGTTTAAAAGCATTATACAAAGAAAGAAC GAAAAAGAGGAAGAAGAAGGTGATAGAGGTGAAGAAGAAGAAGGCGAAGG CGAAGAAGAATCTGCACGATGGGATAAATGATCTCTTTTCTAGCTACCGC ACGGCCCGTGCAAGCTTCATAAAGATGTAAAAGGCAAAGTATAAGACGAG GAAAGGGTTCGAAGC
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Coding sequence (CDS) from alignment at chr5:464982..466946+

>NO05G01700.1 ID=NO05G01700.1|Name=NO05G01700.1|organism=Nannochloropsis oceanica|type=CDS|length=885bp|location=Sequence derived from alignment at chr5:464982..466946+ (Nannochloropsis oceanica)
ATGGGAGGTGAACCCTCCAAGATCCTGCACGGGCCCCCACCGATCCCCAC
CACGAGAAGCAGCAGCAATAATGACAACGACGAGCCGCGATTGCCCTCGC
GCCCCACTCTCCTTCACGGGGGAGCAAACGTTTTGCAAGACCCATCCTTT
TACACCACATATGGAGTGACACACGCTCTCTCGATATGCCAAGCCAAGCC
GCCACCGACCGCGGGTCTGACGATGGTGAAGCACATCAATGAAAGCGACC
TGCCGCACAGTGATCTGCTGCCTCATTTCGAGGATTTTATTTTTTTTATC
CACAACGCACGCGTTGGTGGAGGCGTAGTCTACGTGCACTGCGCCGCCGG
GGTCAGTCGATCCACCACAGCTGTCTGCTCCTACTTGATGTGCATCCACG
CCCTCTCCTTCAAAGATGCCCTCGACTTCATCCGCACCCGTCGCGAAGTG
GCTTGCCCCAACCCTGGCTTTGTCAGACAACTTCAAGCATTTGAAAAAGA
TCCATTCACCATTCAAATGCGTGCCCGTATCCGCAACGCCTTCCCTCATG
ACGTCGCTCTCGTCAAAGCCGACCTTCTCGAAATCAGACAAGCACTCGCA
GAGCGTTCCGCCAGGCTAGGAAGAGACGAAAAAGCCCTGATCCTTGATCC
TCGAAGCCGAATATTGGAAATGATTCACCAGATGCAAGAGCAGCAGGCAG
GTGCGGCGGAAGGGATGAGGGCAGGGGAGGATGATGAGAGTCACGAGCAG
TGCCGGTTGCCAATGAAGCCTCCCCCGGCGGGGTCGTCCGTGATGGCGAT
GAGGCTGGGGGATAAGGGGTATGGATTGACATGGTTGGAGGAGGAGAAGG
ACCATCACACCCGAATGGAGGAGATGCCCCGATGA
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Synonyms
Publications