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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr5 | genome | chr5:464982..466946 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G01700.1 vs.
Match: EWM28184.1 (dual specificity protein phosphatase 15 [Nannochloropsis gaditana]) HSP 1 Score: 328.9 bits (842), Expect = 1.600e-86 Identity = 172/295 (58.31%), Postives = 211/295 (71.53%), Query Frame = 0
Query: 1 MGGEPSKILHGPPPIPTTRSSSNNDNDEPRLPSRPTLLHGGANVLQDPSFYTTYGVTHALSICQAKPPPTAGLTMVKHINESDLPHSDLLPHFEDFIFFIHNARVGGGVVYVHCAAGVSRSTTAVCSYLMCIHALSFKDALDFIRTRREVACPNPGFVRQLQAFEKDPFTIQMRARIRNAFPHDVALVKADLLEIRQALAERSARLGRDEKALILDPRSRILEMIHQMQEQQAGAAEGMRAGEDDESHEQCRLP-MKPPPAGSSVMAMRLGDKGYGLTWLEEEKDHHTRMEEMPR 295
MGGEPSKILH S DND + SRP+LLHGGANVLQD F+ + GVT ALSICQA+PP + GL +KH+NESDLP ++LLP+FE+F+ FIH ARV GG VYVHCAAGVSRSTTA+CSYL+C+H L+FKDALDFIRTRREVACPNPGFVRQLQ FE+D T+ +RARIR+AFP D ALV+ DL EI+ ALAER RLGR E+ L DPR R+L + Q +E+ GM G+DD HE R+ + P +SV G++ +GLTW+ EE+D R ++ R
Sbjct: 1 MGGEPSKILH---------DSLRRDNDGDQTRSRPSLLHGGANVLQDAEFFASNGVTCALSICQARPPASMGLQSIKHVNESDLPQTNLLPYFEEFVNFIHAARVNGGCVYVHCAAGVSRSTTALCSYLICVHGLTFKDALDFIRTRREVACPNPGFVRQLQFFEQDANTVTLRARIRSAFPDDSALVEGDLNEIKDALAERRNRLGRGERLLSSDPRHRLLNYLQQRREEATQGISGMEDGDDD--HEPSRVSVVAEAPCETSVAP---GEEDWGLTWVAEERDEQPRAKKPSR 281
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G01700.1 ID=NO05G01700.1|Name=NO05G01700.1|organism=Nannochloropsis oceanica|type=mRNA|length=1864bp TGCCTGCGGTGGGAGGCATGGCTGAGTATGAATGGTGGGCAAGAGTAGGG ACAAGTGAGAAATGAACGTAGAATGCTACGGCAGAATTTCCAGGTCATGG TGCTGGGTGTGGATGATAGTTGTTCCCCCTGAGACAAGGCTGAAGGGCAT CGCCGAGATCGATTTCCGCGAGAGGCCGGCACGCCGTCGTGCAACTTCTC TTACCCCCAAAAAGTGTCTGTGACTTTCTGCCTCCATTTCGCCCACGACA CCTCACAATCAACTCCTCACACTCTAACCCGCTCCCCGATACAAATTAGT AGGGGGCGCGTTCAGGACCTTAGGCGGGCACTGACAGCCACCCCGGTGAC CGACTGCGTCTATCCTCCCGGCGCATTCGTGTCGTCATCATCACCCTCGC CCACGCCTACCCACCAACCGCCCCTACAAGCTACAATAATGGGAGGTGAA CCCTCCAAGATCCTGCACGGGCCCCCACCGATCCCCACCACGAGAAGCAG CAGCAATAATGACAACGACGAGCCGCGATTGCCCTCGCGCCCCACTCTCC TTCACGGGGGAGCAAACGTTTTGCAAGACCCATCCTTTTACACCACATAT GGAGTGACACACGCTCTCTCGATATGCCAAGCCAAGCCGCCACCGACCGC GGGTCTGACGATGGTGAAGCACATCAATGAAAGCGACCTGCCGCACAGTG ATCTGCTGCCTCATTTCGAGGATTTTATTTTTTTTATCCACAACGCACGC GTTGGTGGAGGCGTAGTCTACGTGCACTGCGCCGCCGGGGTCAGTCGATC CACCACAGCTGTCTGCTCCTACTTGATGTGCATCCACGCCCTCTCCTTCA AAGATGCCCTCGACTTCATCCGCACCCGTCGCGAAGTGGCTTGCCCCAAC CCTGGCTTTGTCAGACAACTTCAAGCATTTGAAAAAGATCCATTCACCAT TCAAATGCGTGCCCGTATCCGCAACGCCTTCCCTCATGACGTCGCTCTCG TCAAAGCCGACCTTCTCGAAATCAGACAAGCACTCGCAGAGCGTTCCGCC AGGCTAGGAAGAGACGAAAAAGCCCTGATCCTTGATCCTCGAAGCCGAAT ATTGGAAATGATTCACCAGATGCAAGAGCAGCAGGCAGGTGCGGCGGAAG GGATGAGGGCAGGGGAGGATGATGAGAGTCACGAGCAGTGCCGGTTGCCA ATGAAGCCTCCCCCGGCGGGGTCGTCCGTGATGGCGATGAGGCTGGGGGA TAAGGGGTATGGATTGACATGGTTGGAGGAGGAGAAGGACCATCACACCC GAATGGAGGAGATGCCCCGATGAATGAGGTGTCAGGGAGGAGGGAGGGCG AGTCGGAGAGGGGGAGTGAAGCTGCGTAGTGTGTGTATGTACGTTTTCCT TAGATTTATGTCGACCGATCTTGACAGAGTGTCCGACAAAACAATACATT TTATAATATTTCATCATGGCAATTTCATAAGATAAAAGTGGCGAGACAAG TAATTCTTCGAACATGACGAGGAGGCTGGGAAGGAGGGAGAAAGGGAAGG GGACGAGAAATAGACCTCTATGTCAAGGGCACAACCCTTTATTTTCTTAG ACAAAATTTAACCTGTTAGATATGGGCTGCAAGTGGTAAACACTAAGCGT ACGGCCGCGAAGGCTTCCACTGTTTAAAAGCATTATACAAAGAAAGAACG AAAAAGAGGAAGAAGAAGGTGATAGAGGTGAAGAAGAAGAAGGCGAAGGC GAAGAAGAATCTGCACGATGGGATAAATGATCTCTTTTCTAGCTACCGCA CGGCCCGTGCAAGCTTCATAAAGATGTAAAAGGCAAAGTATAAGACGAGG AAAGGGTTCGAAGC back to topprotein sequence of NO05G01700.1 >NO05G01700.1-protein ID=NO05G01700.1-protein|Name=NO05G01700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=295bp MGGEPSKILHGPPPIPTTRSSSNNDNDEPRLPSRPTLLHGGANVLQDPSF YTTYGVTHALSICQAKPPPTAGLTMVKHINESDLPHSDLLPHFEDFIFFI HNARVGGGVVYVHCAAGVSRSTTAVCSYLMCIHALSFKDALDFIRTRREV ACPNPGFVRQLQAFEKDPFTIQMRARIRNAFPHDVALVKADLLEIRQALA ERSARLGRDEKALILDPRSRILEMIHQMQEQQAGAAEGMRAGEDDESHEQ CRLPMKPPPAGSSVMAMRLGDKGYGLTWLEEEKDHHTRMEEMPR* back to topmRNA from alignment at chr5:464982..466946+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G01700.1 ID=NO05G01700.1|Name=NO05G01700.1|organism=Nannochloropsis oceanica|type=mRNA|length=1965bp|location=Sequence derived from alignment at chr5:464982..466946+ (Nannochloropsis oceanica) TGCCTGCGGTGGGAGGCATGGCTGAGTATGAATGGTGGGCAAGAGTAGGG
ACAAGTGAGAAATGAACGTAGAATGCTACGGCAGAATTTCCAGGTCATGG
TGCTGGGTGTGGATGATAGTTGTTCCCCCTGAGACAAGGCTGAAGGGCAT
CGCCGAGATCGATTTCCGCGAGAGGCCGGCACGCCGTCGTGCAACTTCTC
TTACCCCCAAAAAGTGTCTGTGACTTTCTGCCTCCATTTCGCCCACGACA
CCTCACAATCAACTCCTCACACTCTAACCCGCTCCCCGATACAAATTAGT
AGGGGGCGCGTTCAGGACCTTAGGCGGGCACTGACAGCCACCCCGGTGAC
CGACTGCGTCTATCCTCCCGGCGCATTCGTGTCGTCATCATCACCCTCGC
CCACGCCTACCCACCAACCGCCCCTACAAGCTACAATAATGGGAGGTGAA
CCCTCCAAGATCCTGCACGGGCCCCCACCGATCCCCACCACGAGAAGCAG
CAGCAATAATGACAACGACGAGCCGCGATTGCCCTCGCGCCCCACTCTCC
TTCACGGGGGAGCAAACGTTTTGCAAGACCCATCCTTTTACACCACATAT
GGAGTGACACACGCTCTCTCGATATGCCAAGCCAAGCCGCCACCGACCGC
GGGTCTGACGATGGTGAAGCACATCAATGAAAGCGACCTGCCGCACAGTG
ATCTGCTGCCTCATTTCGAGGATTTTATTTTTTTTATCCACAACGCACGC
GTTGGTGGAGGCGTAGTCTACGTGTAAGTATGCAAAGCTCCAGTTTTTTC
TCCGCTGCAATATCGAGCACAGCTGTCTCTTGTTTAGACTTGTCGTCTCC
TCATTCATCACAACGCACATACAGGCACTGCGCCGCCGGGGTCAGTCGAT
CCACCACAGCTGTCTGCTCCTACTTGATGTGCATCCACGCCCTCTCCTTC
AAAGATGCCCTCGACTTCATCCGCACCCGTCGCGAAGTGGCTTGCCCCAA
CCCTGGCTTTGTCAGACAACTTCAAGCATTTGAAAAAGATCCATTCACCA
TTCAAATGCGTGCCCGTATCCGCAACGCCTTCCCTCATGACGTCGCTCTC
GTCAAAGCCGACCTTCTCGAAATCAGACAAGCACTCGCAGAGCGTTCCGC
CAGGCTAGGAAGAGACGAAAAAGCCCTGATCCTTGATCCTCGAAGCCGAA
TATTGGAAATGATTCACCAGATGCAAGAGCAGCAGGCAGGTGCGGCGGAA
GGGATGAGGGCAGGGGAGGATGATGAGAGTCACGAGCAGTGCCGGTTGCC
AATGAAGCCTCCCCCGGCGGGGTCGTCCGTGATGGCGATGAGGCTGGGGG
ATAAGGGGTATGGATTGACATGGTTGGAGGAGGAGAAGGACCATCACACC
CGAATGGAGGAGATGCCCCGATGAATGAGGTGTCAGGGAGGAGGGAGGGC
GAGTCGGAGAGGGGGAGTGAAGCTGCGTAGTGTGTGTATGTACGTTTTCC
TTAGATTTATGTCGACCGATCTTGACAGAGTGTCCGACAAAACAATACAT
TTTATAATATTTCATCATGGCAATTTCATAAGATAAAAGTGGCGAGACAA
GTAATTCTTCGAACATGACGAGGAGGCTGGGAAGGAGGGAGAAAGGGAAG
GGGACGAGAAATAGACCTCTATGTCAAGGGCACAACCCTTTATTTTCTTA
GACAAAATTTAACCTGTTAGATATGGGCTGCAAGTGGTAAACACTAAGCG
TACGGCCGCGAAGGCTTCCACTGTTTAAAAGCATTATACAAAGAAAGAAC
GAAAAAGAGGAAGAAGAAGGTGATAGAGGTGAAGAAGAAGAAGGCGAAGG
CGAAGAAGAATCTGCACGATGGGATAAATGATCTCTTTTCTAGCTACCGC
ACGGCCCGTGCAAGCTTCATAAAGATGTAAAAGGCAAAGTATAAGACGAG
GAAAGGGTTCGAAGC back to topCoding sequence (CDS) from alignment at chr5:464982..466946+ >NO05G01700.1 ID=NO05G01700.1|Name=NO05G01700.1|organism=Nannochloropsis oceanica|type=CDS|length=885bp|location=Sequence derived from alignment at chr5:464982..466946+ (Nannochloropsis oceanica) ATGGGAGGTGAACCCTCCAAGATCCTGCACGGGCCCCCACCGATCCCCAC CACGAGAAGCAGCAGCAATAATGACAACGACGAGCCGCGATTGCCCTCGC GCCCCACTCTCCTTCACGGGGGAGCAAACGTTTTGCAAGACCCATCCTTT TACACCACATATGGAGTGACACACGCTCTCTCGATATGCCAAGCCAAGCC GCCACCGACCGCGGGTCTGACGATGGTGAAGCACATCAATGAAAGCGACC TGCCGCACAGTGATCTGCTGCCTCATTTCGAGGATTTTATTTTTTTTATC CACAACGCACGCGTTGGTGGAGGCGTAGTCTACGTGCACTGCGCCGCCGG GGTCAGTCGATCCACCACAGCTGTCTGCTCCTACTTGATGTGCATCCACG CCCTCTCCTTCAAAGATGCCCTCGACTTCATCCGCACCCGTCGCGAAGTG GCTTGCCCCAACCCTGGCTTTGTCAGACAACTTCAAGCATTTGAAAAAGA TCCATTCACCATTCAAATGCGTGCCCGTATCCGCAACGCCTTCCCTCATG ACGTCGCTCTCGTCAAAGCCGACCTTCTCGAAATCAGACAAGCACTCGCA GAGCGTTCCGCCAGGCTAGGAAGAGACGAAAAAGCCCTGATCCTTGATCC TCGAAGCCGAATATTGGAAATGATTCACCAGATGCAAGAGCAGCAGGCAG GTGCGGCGGAAGGGATGAGGGCAGGGGAGGATGATGAGAGTCACGAGCAG TGCCGGTTGCCAATGAAGCCTCCCCCGGCGGGGTCGTCCGTGATGGCGAT GAGGCTGGGGGATAAGGGGTATGGATTGACATGGTTGGAGGAGGAGAAGG ACCATCACACCCGAATGGAGGAGATGCCCCGATGA back to top
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