|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr5 | genome | chr5:456703..459431 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G01670.1 vs.
Match: EWM28171.1 (katanin p60 atpase-containing subunit a 1 [Nannochloropsis gaditana]) HSP 1 Score: 807.0 bits (2083), Expect = 4.500e-230 Identity = 478/691 (69.18%), Postives = 539/691 (78.00%), Query Frame = 0
Query: 1 MADTLSQNPSAVNNSTEISTSSAN----TTKPSSISLSMPSKVKKLPLLLRQAREHGLLSQYDTAIQLHRKAQQVLHDFIKDDLASEEQGDRRVKYLRLAKEIKAEENLVKELHSTLSSIPSTPPSNKPKPLLPPPPLSAAAQAAAADKKRLAAAAAAAAAAAEPAEADTKSGRDPDVWEAPPPPAGGSRGNARAFMGGSGGSGVRTRRQSISGANAAGGGGSKGGGRRAMSTS---VNSNHRRTSVGSRTITTTTTTSSSSSSSSARADGSRIRAPVKPVLPTNPSSALSQN-ARRNQGRCGGGNPPSLDTSGPYAALHKSNSSNSSNGSGGVGEGVESDPLPLAANGKPRYSDVARGEGWADTELIESIEREIVEQGVNVSWESIADLTEAKQLLQEAVVLPLWMPDYFKGIRRPWKGVLLFGPPGTGKTMLAKAVATECATTFFNVSASTLGSKYRGDSEKMVRILFEMARYYAPSTLFFDEIDSIAGSRGGSGEHEASRRVKTELMVQMDGVADQSSQKGGGEEEGGEGGEEERPGSKTVIVLAATNTPWDLDDALRRRMEKRIYISLPTEEGRKELFRINMKDIELGDDLDLDILAKQTEGYSGADIANVCRDASMMSVRRVVEEARKQGLHGLEIQKALMANREKLHSSTVTQADFLFALSKVSKSVGTGDLSKYQEWMQEFGSV 684
MAD +++ +N+ + ST++A T K ++ S+PS VKKLPLLLRQAREHGLLSQY+ AIQLHRKAQQVL +F L S++Q RR +YL+LAKE+KAEE LV EL +TL SIP PPSNKP+P PPPPLSAAA A+ KR AAA AA+ D++ R+P VWEAP PP R ++A +GG G G+RT RQS+ GG GRR + S + SN R + G+R T TSSS+++ + RA+G+R R VKP +P ++A S + ARRN GR G N ++DT+GPYA L K NSSNS+N D PLA NGKPRYSDVAR GWADTELIESIEREIVEQGVNVSW+SIADL EAKQLLQEAVVLPLWMPDYFKGIRRPWKGVLLFGPPGTGKTMLAKAVATECATTFFNVSASTLGSKYRGDSEKMVRILFEMARYYAPSTLFFDEIDSIAGSRGGSGEHEASRRVKTELMVQMDGVAD S+ + E G EEERPGSKTVIVLAATN PWDLDDALRRRMEKRIYISLPTEEGRKELFRINM+DIE+GDDLDLD LA+QTEGYSGADIANVCRDASMMSVRRV+EEARKQGLHGLEIQKALMANR+KL +S VTQADFLFALSK+SKSVG+GDL +Y +WMQEFGSV
Sbjct: 1 MADAANKSSLPGSNTLQSSTNTAENASATIKAAATLPSIPSAVKKLPLLLRQAREHGLLSQYEAAIQLHRKAQQVLQEFANVTLKSDDQEWRRNRYLKLAKELKAEEALVNELQNTLRSIPPVPPSNKPRPPSPPPPLSAAAAAS----KREAAALAASQL------PDSEIAREPGVWEAPTPPTTSRR--SKASVGGREG-GMRTHRQSL-----GVGGKETAEGRRVAAASTRKLGSNRRTSQAGAR---PATVTSSSAAAVAGRAEGTRTRTSVKPPVPVTVNTASSSSGARRNAGR--GVNATAVDTAGPYATLQKHNSSNSANSRA-------EDTPPLALNGKPRYSDVAREAGWADTELIESIEREIVEQGVNVSWDSIADLQEAKQLLQEAVVLPLWMPDYFKGIRRPWKGVLLFGPPGTGKTMLAKAVATECATTFFNVSASTLGSKYRGDSEKMVRILFEMARYYAPSTLFFDEIDSIAGSRGGSGEHEASRRVKTELMVQMDGVADASATTSVDDNEEGAVDEEERPGSKTVIVLAATNMPWDLDDALRRRMEKRIYISLPTEEGRKELFRINMRDIEVGDDLDLDTLAQQTEGYSGADIANVCRDASMMSVRRVMEEARKQGLHGLEIQKALMANRDKLQASMVTQADFLFALSKISKSVGSGDLQRYNDWMQEFGSV 661
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G01670.1 ID=NO05G01670.1|Name=NO05G01670.1|organism=Nannochloropsis oceanica|type=mRNA|length=2407bp ATGGCGGACACCCTCTCCCAAAACCCGAGCGCCGTCAACAACAGCACCGA AATCAGCACCAGCAGTGCCAACACCACCAAACCCAGCAGCATCTCCTTGT CCATGCCTTCGAAAGTGAAAAAGTTGCCCCTGCTCCTTCGCCAAGCTCGG GAGCACGGCCTGCTTAGCCAGTACGACACGGCCATCCAGCTCCATCGCAA GGCCCAACAAGTCCTCCACGACTTCATCAAGGATGACCTGGCCTCAGAAG AACAAGGAGACCGACGTGTCAAGTATTTGCGGTTGGCTAAGGAAATCAAA GCGGAAGAAAACCTTGTCAAGGAACTTCACAGCACCCTCTCCTCCATCCC CTCGACTCCACCAAGCAACAAGCCAAAACCTCTACTTCCTCCTCCCCCAC TCTCCGCCGCCGCCCAAGCTGCGGCCGCTGATAAGAAAAGACTTGCCGCG GCAGCAGCAGCAGCAGCAGCAGCAGCAGAACCGGCAGAAGCGGACACAAA ATCCGGACGTGATCCCGACGTGTGGGAAGCGCCACCACCGCCGGCTGGTG GTTCGCGAGGCAACGCTCGTGCGTTCATGGGTGGGAGTGGTGGGTCAGGG GTCCGAACACGTCGGCAATCTATCAGCGGTGCAAATGCAGCAGGAGGAGG CGGAAGTAAAGGAGGGGGAAGGCGTGCTATGTCCACATCGGTCAACAGCA ACCACCGGCGGACATCAGTAGGCTCCCGTACCATCACAACCACCACCACT ACTTCCTCCTCTTCCTCCTCTTCCTCAGCCAGAGCCGATGGCAGCCGTAT CCGTGCCCCGGTAAAACCTGTCTTGCCCACCAACCCCTCCTCCGCTTTAT CCCAAAACGCCCGACGAAACCAAGGCCGCTGTGGTGGTGGAAACCCTCCC TCCCTTGATACCTCTGGGCCGTACGCCGCTCTACACAAAAGCAACAGTAG CAACAGTAGCAACGGCAGCGGTGGGGTTGGAGAAGGAGTAGAGAGCGACC CTCTCCCTTTGGCCGCGAACGGCAAGCCGCGTTACAGCGACGTGGCGCGC GGGGAGGGCTGGGCTGACACGGAGCTGATCGAGAGCATTGAAAGGGAGAT TGTGGAGCAGGGGGTCAATGTATCATGGGAGTCCATAGCTGATTTGACGG AGGCGAAGCAGCTGCTGCAGGAGGCGGTGGTGCTGCCTTTGTGGATGCCG GACTACTTCAAGGGGATCCGACGACCCTGGAAGGGGGTATTATTGTTTGG ACCACCAGGCACGGGCAAGACGATGCTGGCCAAGGCCGTGGCCACGGAGT GCGCCACCACCTTCTTTAATGTCTCTGCATCCACGCTCGGCTCCAAGTAC CGCGGCGACAGCGAGAAGATGGTTCGGATTCTATTTGAAATGGCCCGATA CTACGCCCCCTCAACCTTGTTCTTCGACGAGATCGACTCCATTGCTGGCT CGCGGGGAGGGAGCGGCGAGCATGAGGCAAGCCGTCGGGTGAAGACTGAG TTGATGGTTCAGATGGACGGCGTTGCGGATCAGAGCTCGCAGAAAGGAGG GGGGGAGGAAGAGGGGGGGGAAGGGGGGGAAGAGGAACGACCGGGGAGTA AGACTGTGATTGTGTTGGCGGCTACGAATACACCGTGGGATTTGGACGAT GCGTTGAGGCGGAGGATGGAGAAACGGATCTACATTTCCCTGCCGACGGA GGAGGGGAGGAAGGAGTTGTTCAGGATTAATATGAAGGATATTGAGTTGG GCGATGACCTTGATTTGGATATTTTGGCGAAGCAGACAGAGGGATACTCA GGGGCGGACATCGCGAACGTGTGTAGGGATGCAAGTATGATGAGCGTGAG AAGGGTGGTGGAGGAGGCGCGGAAGCAGGGCTTGCATGGCTTGGAGATCC AGAAGGCGCTGATGGCTAATCGGGAGAAGTTACATTCCTCAACGGTAACC CAAGCGGACTTCTTGTTTGCCTTGTCCAAGGTGAGCAAGAGTGTGGGGAC GGGGGATCTAAGTAAGTACCAGGAGTGGATGCAGGAGTTCGGCAGTGTGT AGAGAAGAGTTACGAAGTAAGGGTAGGAGGGTAACATGAGATCGATGGTA CAGGAGCGGATGGGGAGCGGGATGTCAGTTGCAGGAACAGACGCGAAGAG ATAGAGCTGGGGAGATAAGCCTTGAGGTATAAGCGTGTGTCTGTGTTCAA TGATGGACGGGTGCGTGCACGTGAGTGTCGGGGGGGGAAGGGGCGTGAGG GCATGCGTGTGTAAAGGAAACAAGGAACAGTACAAGAGAAAGAATAAATA TATTCCCATACACTCTTACTCCCTCATCTGGTTATCGTCTCCCGCCTTCG TCTCCCTCTTCCTTCGCCTCCTCCGCCTCCTCCTTCGCCTCCTCCTCTTC TTCGCCG back to topprotein sequence of NO05G01670.1 >NO05G01670.1-protein ID=NO05G01670.1-protein|Name=NO05G01670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=684bp MADTLSQNPSAVNNSTEISTSSANTTKPSSISLSMPSKVKKLPLLLRQAR EHGLLSQYDTAIQLHRKAQQVLHDFIKDDLASEEQGDRRVKYLRLAKEIK AEENLVKELHSTLSSIPSTPPSNKPKPLLPPPPLSAAAQAAAADKKRLAA AAAAAAAAAEPAEADTKSGRDPDVWEAPPPPAGGSRGNARAFMGGSGGSG VRTRRQSISGANAAGGGGSKGGGRRAMSTSVNSNHRRTSVGSRTITTTTT TSSSSSSSSARADGSRIRAPVKPVLPTNPSSALSQNARRNQGRCGGGNPP SLDTSGPYAALHKSNSSNSSNGSGGVGEGVESDPLPLAANGKPRYSDVAR GEGWADTELIESIEREIVEQGVNVSWESIADLTEAKQLLQEAVVLPLWMP DYFKGIRRPWKGVLLFGPPGTGKTMLAKAVATECATTFFNVSASTLGSKY RGDSEKMVRILFEMARYYAPSTLFFDEIDSIAGSRGGSGEHEASRRVKTE LMVQMDGVADQSSQKGGGEEEGGEGGEEERPGSKTVIVLAATNTPWDLDD ALRRRMEKRIYISLPTEEGRKELFRINMKDIELGDDLDLDILAKQTEGYS GADIANVCRDASMMSVRRVVEEARKQGLHGLEIQKALMANREKLHSSTVT QADFLFALSKVSKSVGTGDLSKYQEWMQEFGSV* back to topmRNA from alignment at chr5:456703..459431- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G01670.1 ID=NO05G01670.1|Name=NO05G01670.1|organism=Nannochloropsis oceanica|type=mRNA|length=2729bp|location=Sequence derived from alignment at chr5:456703..459431- (Nannochloropsis oceanica) ATGGCGGACACCCTCTCCCAAAACCCGAGCGCCGTCAACAACAGCACCGA
AATCAGCACCAGCAGTGCCAACACCACCAAACCCAGCAGCATCTCCTTGT
CCATGCCTTCGAAAGTGAAAAAGTTGCCCCTGCTCCTTCGCCAAGCTCGG
GAGCACGGCCTGCTTAGCCAGTACGACACGGCCATCCAGCTCCATCGCAA
GGCCCAACAAGTCCTCCACGACTTCATCAAGGATGACCTGGCCTCAGAAG
AACAAGGAGACCGACGTGTCAAGTATTTGCGGTTGGCTAAGGAAATCAAA
GCGGAAGAAAACCTTGTCAAGGAACTTCACAGCACCCTCTCCTCCATCCC
CTCGACTCCACCAAGCAACAAGCCAAAACCTCTACTTCCTCCTCCCCCAC
TCTCCGCCGCCGCCCAAGCTGCGGCCGCTGATAAGAAAAGACTTGCCGCG
GCAGCAGCAGCAGCAGCAGCAGCAGCAGAACCGGCAGAAGCGGACACAAA
ATCCGGACGTGATCCCGACGTGTGGGAAGCGCCACCACCGCCGGCTGGTG
GTTCGCGAGGCAACGCTCGTGCGTTCATGGGTGGGAGTGGTGGGTCAGGG
GTCCGAACACGTCGGCAATCTATCAGCGGTGCAAATGCAGCAGGAGGAGG
CGGAAGTAAAGGAGGGGGAAGGCGTGCTATGTCCACATCGGTCAACAGCA
ACCACCGGCGGACATCAGTAGGCTCCCGTACCATCACAACCACCACCACT
ACTTCCTCCTCTTCCTCCTCTTCCTCAGCCAGAGCCGATGGCAGCCGTAT
CCGTGCCCCGGTAAAACCTGTCTTGCCCACCAACCCCTCCTCCGCTTTAT
CCCAAAACGCCCGACGAAACCAAGGCCGCTGTGGTGGTGGAAACCCTCCC
TCCCTTGATACCTCTGGGCCGTACGCCGCTCTACACAAAAGCAACAGTAG
CAACAGTAGCAACGGCAGCGGTGGGGTTGGAGAAGGAGTAGAGAGCGACC
CTCTCCCTTTGGCCGCGAACGGCAAGCCGCGTTACAGCGACGTGGCGCGC
GGGGAGGGCTGGGCTGACACGGAGCTGATCGAGAGCATTGAAAGGGAGAT
TGTGGAGCAGGGGGTCAATGTATCATGGGAGTCCATAGCTGATTTGACGG
AGGCGAAGCAGCTGCTGCAGGAGGCGGTGGTGCTGCCTTTGTGGATGCCG
GACTACTTCAAGGGGATCCGACGACCCTGGAAGGGGGTATTATTGTTTGG
GTACGATGGGAGGGACCGAGGGAGGATATATATACATAGAGAGAGAGAGC
GATTGAAAGAAAGAGGAGGGAGAGGAGGGAGAAGGGGAGGGCGTATGATA
GGAATAAAGGGACGGGTTGGGATGTGGAGACTGCAGACGAAATGACCCGG
GTCCCCTTGTTTCTGTCGATCTCTCTCCTCCACACACAGACCACCAGGCA
CGGGCAAGACGATGCTGGCCAAGGCCGTGGCCACGGAGTGCGCCACCACC
TTCTTTAATGTCTCTGCATCCACGCTCGGCTCCAAGGTACGGCTCCTGGC
TTGGTTTAGCAACTATCGCCAATCTCCACCCCACGAGATTCGTGTAAATC
TTGTTTCCAACTTGGGCACGACTACCGTCTACTGACACCTTGCCTTTCCT
CCCTCCTCACCCCAAACAGTACCGCGGCGACAGCGAGAAGATGGTTCGGA
TTCTATTTGAAATGGCCCGATACTACGCCCCCTCAACCTTGTTCTTCGAC
GAGATCGACTCCATTGCTGGCTCGCGGGGAGGGAGCGGCGAGCATGAGGC
AAGCCGTCGGGTGAAGACTGAGTTGATGGTTCAGATGGACGGCGTTGCGG
ATCAGAGCTCGCAGAAAGGAGGGGGGGAGGAAGAGGGGGGGGAAGGGGGG
GAAGAGGAACGACCGGGGAGTAAGACTGTGATTGTGTTGGCGGCTACGAA
TACACCGTGGGATTTGGACGATGCGTTGAGGCGGAGGATGGAGAAACGGA
TCTACATTTCCCTGCCGACGGAGGAGGGGAGGAAGGAGTTGTTCAGGATT
AATATGAAGGATATTGAGTTGGGCGATGACCTTGATTTGGATATTTTGGC
GAAGCAGACAGAGGGATACTCAGGGGCGGACATCGCGAACGTGTGTAGGG
ATGCAAGTATGATGAGCGTGAGAAGGGTGGTGGAGGAGGCGCGGAAGCAG
GGCTTGCATGGCTTGGAGATCCAGAAGGCGCTGATGGCTAATCGGGAGAA
GTTACATTCCTCAACGGTAACCCAAGCGGACTTCTTGTTTGCCTTGTCCA
AGGTGAGCAAGAGTGTGGGGACGGGGGATCTAAGTAAGTACCAGGAGTGG
ATGCAGGAGTTCGGCAGTGTGTAGAGAAGAGTTACGAAGTAAGGGTAGGA
GGGTAACATGAGATCGATGGTACAGGAGCGGATGGGGAGCGGGATGTCAG
TTGCAGGAACAGACGCGAAGAGATAGAGCTGGGGAGATAAGCCTTGAGGT
ATAAGCGTGTGTCTGTGTTCAATGATGGACGGGTGCGTGCACGTGAGTGT
CGGGGGGGGAAGGGGCGTGAGGGCATGCGTGTGTAAAGGAAACAAGGAAC
AGTACAAGAGAAAGAATAAATATATTCCCATACACTCTTACTCCCTCATC
TGGTTATCGTCTCCCGCCTTCGTCTCCCTCTTCCTTCGCCTCCTCCGCCT
CCTCCTTCGCCTCCTCCTCTTCTTCGCCG back to topCoding sequence (CDS) from alignment at chr5:456703..459431- >NO05G01670.1 ID=NO05G01670.1|Name=NO05G01670.1|organism=Nannochloropsis oceanica|type=CDS|length=2052bp|location=Sequence derived from alignment at chr5:456703..459431- (Nannochloropsis oceanica) ATGGCGGACACCCTCTCCCAAAACCCGAGCGCCGTCAACAACAGCACCGA AATCAGCACCAGCAGTGCCAACACCACCAAACCCAGCAGCATCTCCTTGT CCATGCCTTCGAAAGTGAAAAAGTTGCCCCTGCTCCTTCGCCAAGCTCGG GAGCACGGCCTGCTTAGCCAGTACGACACGGCCATCCAGCTCCATCGCAA GGCCCAACAAGTCCTCCACGACTTCATCAAGGATGACCTGGCCTCAGAAG AACAAGGAGACCGACGTGTCAAGTATTTGCGGTTGGCTAAGGAAATCAAA GCGGAAGAAAACCTTGTCAAGGAACTTCACAGCACCCTCTCCTCCATCCC CTCGACTCCACCAAGCAACAAGCCAAAACCTCTACTTCCTCCTCCCCCAC TCTCCGCCGCCGCCCAAGCTGCGGCCGCTGATAAGAAAAGACTTGCCGCG GCAGCAGCAGCAGCAGCAGCAGCAGCAGAACCGGCAGAAGCGGACACAAA ATCCGGACGTGATCCCGACGTGTGGGAAGCGCCACCACCGCCGGCTGGTG GTTCGCGAGGCAACGCTCGTGCGTTCATGGGTGGGAGTGGTGGGTCAGGG GTCCGAACACGTCGGCAATCTATCAGCGGTGCAAATGCAGCAGGAGGAGG CGGAAGTAAAGGAGGGGGAAGGCGTGCTATGTCCACATCGGTCAACAGCA ACCACCGGCGGACATCAGTAGGCTCCCGTACCATCACAACCACCACCACT ACTTCCTCCTCTTCCTCCTCTTCCTCAGCCAGAGCCGATGGCAGCCGTAT CCGTGCCCCGGTAAAACCTGTCTTGCCCACCAACCCCTCCTCCGCTTTAT CCCAAAACGCCCGACGAAACCAAGGCCGCTGTGGTGGTGGAAACCCTCCC TCCCTTGATACCTCTGGGCCGTACGCCGCTCTACACAAAAGCAACAGTAG CAACAGTAGCAACGGCAGCGGTGGGGTTGGAGAAGGAGTAGAGAGCGACC CTCTCCCTTTGGCCGCGAACGGCAAGCCGCGTTACAGCGACGTGGCGCGC GGGGAGGGCTGGGCTGACACGGAGCTGATCGAGAGCATTGAAAGGGAGAT TGTGGAGCAGGGGGTCAATGTATCATGGGAGTCCATAGCTGATTTGACGG AGGCGAAGCAGCTGCTGCAGGAGGCGGTGGTGCTGCCTTTGTGGATGCCG GACTACTTCAAGGGGATCCGACGACCCTGGAAGGGGGTATTATTGTTTGG ACCACCAGGCACGGGCAAGACGATGCTGGCCAAGGCCGTGGCCACGGAGT GCGCCACCACCTTCTTTAATGTCTCTGCATCCACGCTCGGCTCCAAGTAC CGCGGCGACAGCGAGAAGATGGTTCGGATTCTATTTGAAATGGCCCGATA CTACGCCCCCTCAACCTTGTTCTTCGACGAGATCGACTCCATTGCTGGCT CGCGGGGAGGGAGCGGCGAGCATGAGGCAAGCCGTCGGGTGAAGACTGAG TTGATGGTTCAGATGGACGGCGTTGCGGATCAGAGCTCGCAGAAAGGAGG GGGGGAGGAAGAGGGGGGGGAAGGGGGGGAAGAGGAACGACCGGGGAGTA AGACTGTGATTGTGTTGGCGGCTACGAATACACCGTGGGATTTGGACGAT GCGTTGAGGCGGAGGATGGAGAAACGGATCTACATTTCCCTGCCGACGGA GGAGGGGAGGAAGGAGTTGTTCAGGATTAATATGAAGGATATTGAGTTGG GCGATGACCTTGATTTGGATATTTTGGCGAAGCAGACAGAGGGATACTCA GGGGCGGACATCGCGAACGTGTGTAGGGATGCAAGTATGATGAGCGTGAG AAGGGTGGTGGAGGAGGCGCGGAAGCAGGGCTTGCATGGCTTGGAGATCC AGAAGGCGCTGATGGCTAATCGGGAGAAGTTACATTCCTCAACGGTAACC CAAGCGGACTTCTTGTTTGCCTTGTCCAAGGTGAGCAAGAGTGTGGGGAC GGGGGATCTAAGTAAGTACCAGGAGTGGATGCAGGAGTTCGGCAGTGTGT AG back to top
|