NO05G01640.1, NO05G01640.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G01640.1
Unique NameNO05G01640.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length273
Alignment locationchr5:453598..454248 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:453598..454248 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G01640.1 vs.
Match: EWM28223.1 (splicing factor 3b subunit 5 [Nannochloropsis gaditana])

HSP 1 Score: 192.6 bits (488), Expect = 5.400e-46
Identity = 87/89 (97.75%), Postives = 89/89 (100.00%), Query Frame = 0 
Query:    1 MAADRFNINRSWEHLQNKYVGTGHPDLTKHEWLTNQHRDTYATHLGHHDQLAYIAVAQNDAVGRVRYQMLEKMLQPCGPPPAAKDDEDE 90
            MAADRFNINRSWEHLQNKYVGTGHPDLTKHEWLTNQHRDTYATHLGHHDQLAYIAVAQNDAVGRVRYQ+LEKMLQPCGPPPAAKDDED+
Sbjct:    1 MAADRFNINRSWEHLQNKYVGTGHPDLTKHEWLTNQHRDTYATHLGHHDQLAYIAVAQNDAVGRVRYQLLEKMLQPCGPPPAAKDDEDD 89
The following BLAST results are available for this feature:
BLAST of NO05G01640.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28223.15.400e-4697.75splicing factor 3b subunit 5 [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G01640NO05G01640Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G01640.1NO05G01640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G01640.1.cds1NO05G01640.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G01640.1.cds2NO05G01640.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G01640.1.cds3NO05G01640.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G01640.1 ID=NO05G01640.1|Name=NO05G01640.1|organism=Nannochloropsis oceanica|type=mRNA|length=273bp
ATGGCGGCCGACCGATTTAACATAAACCGTAGTTGGGAGCATTTGCAAAA
TAAGTATGTGGGCACAGGTCACCCAGACCTGACCAAACATGAATGGCTGA
CAAATCAGCACCGAGACACCTACGCCACCCATCTGGGCCACCACGACCAG
CTGGCTTACATTGCCGTCGCGCAAAATGACGCCGTGGGGCGTGTCCGCTA
CCAGATGCTCGAGAAGATGTTACAGCCTTGCGGGCCACCACCTGCGGCAA
AGGATGACGAAGATGAGGATTAA
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protein sequence of NO05G01640.1

>NO05G01640.1-protein ID=NO05G01640.1-protein|Name=NO05G01640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=91bp
MAADRFNINRSWEHLQNKYVGTGHPDLTKHEWLTNQHRDTYATHLGHHDQ
LAYIAVAQNDAVGRVRYQMLEKMLQPCGPPPAAKDDEDED*
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mRNA from alignment at chr5:453598..454248-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G01640.1 ID=NO05G01640.1|Name=NO05G01640.1|organism=Nannochloropsis oceanica|type=mRNA|length=651bp|location=Sequence derived from alignment at chr5:453598..454248- (Nannochloropsis oceanica)
ATGGTAAGTCTTCAGTCTTCCCTCCCCCTTCCTACGAAGGGACCGTCATC
ACGGCTTTCCGTCATCACGATGCAGCCACTCACCCACGCCTCATGTCGAC
GTACAGGCGGCCGACCGATTTAACATAAACCGTAGTTGGGAGCATTTGCA
AAATAAGTATGTGGGCACAGGTCACCCAGACCTGACCAAACAGTAAGTGC
TCGCGGGCAGGGAGTAAGAGAGGGCTTCGGGGTCGATGATAATGCGGGGA
GCGTGGTTGAGAGGCACACGTGAGCTCATTTCCAGCCGCCCATAATCCTA
AGCGTATTTATGCATCGAGAGCAGTCTTATTGGCCTTATCGTAGGCGTAT
CATGTGGTATACTTTATTAAAGAGGCGTTGGTTGTCTGGCGGTGTTCTCA
TCCCTCCTCTTGTTCTGCGTGCCATGTCCCTTTCCCACTCGTCTGTCCCA
CTTTCCGCTCCCAACAGTGAATGGCTGACAAATCAGCACCGAGACACCTA
CGCCACCCATCTGGGCCACCACGACCAGCTGGCTTACATTGCCGTCGCGC
AAAATGACGCCGTGGGGCGTGTCCGCTACCAGATGCTCGAGAAGATGTTA
CAGCCTTGCGGGCCACCACCTGCGGCAAAGGATGACGAAGATGAGGATTA
A
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Coding sequence (CDS) from alignment at chr5:453598..454248-

>NO05G01640.1 ID=NO05G01640.1|Name=NO05G01640.1|organism=Nannochloropsis oceanica|type=CDS|length=273bp|location=Sequence derived from alignment at chr5:453598..454248- (Nannochloropsis oceanica)
ATGGCGGCCGACCGATTTAACATAAACCGTAGTTGGGAGCATTTGCAAAA
TAAGTATGTGGGCACAGGTCACCCAGACCTGACCAAACATGAATGGCTGA
CAAATCAGCACCGAGACACCTACGCCACCCATCTGGGCCACCACGACCAG
CTGGCTTACATTGCCGTCGCGCAAAATGACGCCGTGGGGCGTGTCCGCTA
CCAGATGCTCGAGAAGATGTTACAGCCTTGCGGGCCACCACCTGCGGCAA
AGGATGACGAAGATGAGGATTAA
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Synonyms
Publications