NO05G01610.1, NO05G01610.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G01610.1
Unique NameNO05G01610.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length891
Alignment locationchr5:447302..448192 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:447302..448192 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO05G01610.1 vs.
Match: EWM28198.1 (pseudouridine synthase [Nannochloropsis gaditana])

HSP 1 Score: 365.9 bits (938), Expect = 1.200e-97
Identity = 182/283 (64.31%), Postives = 222/283 (78.45%), Query Frame = 0
Query:    2 SKARKLIRKGQVLINDSNGNTCEGTVRGGDVITIVPPEAPKEKKGKGGKDGGQGRGIKKVTVLYEDNDLAVIVKPAGVAVHGTGSYSLVEEYANFLTPTTRG-EEEALDKPMHAHRLDAPVGGLLVIAKTKTALQGLLSAFLERKVKKTYQTIVIGRPSPESGDITTEVEEKEAFTHFKVLETVPSLTFGCLSLLELSPETGRKHQLRRHCLDLNTPILGDIRYGPQNTLRTRGLFLWSVGVSFTHPVTGKNEAFEVGLPEIFGNTMNMERRKAETQLVQEKG 284
            SKARKLIRKGQVL+ND  G TCE  V  GD I +V  E        G + GG GRG+KKV V++ED+DLAVIVKPAGVAVHGTG+YSLV+EY+ FL PT+R  E+ AL KP+HAHRLDAPVGGLL++AKTK ALQGL++AFLER+V+KTY+ +VIGRP+  +G +   VE K+A T +KV+ +VPS  FG L+ +EL+PETGRKHQLR+HC  L TPILGD+RYGP NTLRTRGLFL+S+ VSF HPVT   E F + +PEIFGNTMNMER+KAE    +E+G
Sbjct:  154 SKARKLIRKGQVLVNDEPGKTCEAIVEKGDRIKVVAQET------NGKQKGGAGRGVKKVVVVWEDDDLAVIVKPAGVAVHGTGAYSLVDEYSKFLQPTSRSLEDGALPKPVHAHRLDAPVGGLLLVAKTKPALQGLVTAFLERRVQKTYRAVVIGRPAEPAGQVLAPVEGKDAVTRYKVVASVPSPAFGALTSIELNPETGRKHQLRQHCQALGTPILGDLRYGPSNTLRTRGLFLYSMAVSFVHPVTTTAETFRIEVPEIFGNTMNMERKKAERMAEEEEG 430          
The following BLAST results are available for this feature:
BLAST of NO05G01610.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28198.11.200e-9764.31pseudouridine synthase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G01610NO05G01610Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G01610.1NO05G01610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G01610.1.cds1NO05G01610.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G01610.1 ID=NO05G01610.1|Name=NO05G01610.1|organism=Nannochloropsis oceanica|type=mRNA|length=891bp
ATGTCCAAAGCCCGCAAACTTATCCGCAAAGGTCAAGTCCTCATCAATGA
TAGTAACGGAAATACTTGCGAGGGCACTGTCCGCGGCGGTGACGTCATCA
CAATAGTACCCCCTGAGGCGCCCAAGGAAAAGAAAGGAAAAGGAGGGAAA
GATGGAGGTCAGGGAAGGGGTATCAAGAAAGTGACAGTTCTCTACGAAGA
TAATGACCTTGCAGTCATTGTCAAGCCTGCTGGTGTGGCTGTGCATGGCA
CGGGCTCTTATTCACTAGTAGAGGAATATGCGAATTTTTTGACTCCCACA
ACAAGAGGGGAGGAGGAGGCGCTAGACAAGCCGATGCATGCACACCGGCT
CGACGCTCCTGTGGGAGGGCTGTTGGTAATCGCAAAAACAAAGACAGCAC
TACAAGGTCTACTATCAGCATTTTTGGAACGAAAAGTGAAGAAGACATAT
CAAACGATAGTCATTGGTCGGCCTAGTCCTGAGTCGGGAGATATTACAAC
AGAAGTAGAGGAAAAGGAGGCATTCACGCATTTCAAGGTCCTCGAGACCG
TCCCCTCCCTCACCTTCGGCTGTCTTTCTCTACTGGAACTATCGCCCGAG
ACAGGACGCAAGCATCAATTGAGACGGCATTGCCTCGATCTAAATACACC
TATATTGGGTGATATCCGCTACGGCCCCCAAAACACCTTGAGGACAAGAG
GACTCTTCCTCTGGAGCGTCGGTGTAAGTTTTACCCACCCTGTGACGGGG
AAGAATGAGGCGTTCGAGGTGGGCTTGCCTGAGATCTTCGGGAATACTAT
GAACATGGAGAGGAGGAAGGCGGAGACACAGCTGGTTCAGGAGAAAGGGA
AGGGGGACAAAGTGGAGGTGGATGATAAGGGCAAGGATTAA
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protein sequence of NO05G01610.1

>NO05G01610.1-protein ID=NO05G01610.1-protein|Name=NO05G01610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=297bp
MSKARKLIRKGQVLINDSNGNTCEGTVRGGDVITIVPPEAPKEKKGKGGK
DGGQGRGIKKVTVLYEDNDLAVIVKPAGVAVHGTGSYSLVEEYANFLTPT
TRGEEEALDKPMHAHRLDAPVGGLLVIAKTKTALQGLLSAFLERKVKKTY
QTIVIGRPSPESGDITTEVEEKEAFTHFKVLETVPSLTFGCLSLLELSPE
TGRKHQLRRHCLDLNTPILGDIRYGPQNTLRTRGLFLWSVGVSFTHPVTG
KNEAFEVGLPEIFGNTMNMERRKAETQLVQEKGKGDKVEVDDKGKD*
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mRNA from alignment at chr5:447302..448192+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G01610.1 ID=NO05G01610.1|Name=NO05G01610.1|organism=Nannochloropsis oceanica|type=mRNA|length=891bp|location=Sequence derived from alignment at chr5:447302..448192+ (Nannochloropsis oceanica)
ATGTCCAAAGCCCGCAAACTTATCCGCAAAGGTCAAGTCCTCATCAATGA TAGTAACGGAAATACTTGCGAGGGCACTGTCCGCGGCGGTGACGTCATCA CAATAGTACCCCCTGAGGCGCCCAAGGAAAAGAAAGGAAAAGGAGGGAAA GATGGAGGTCAGGGAAGGGGTATCAAGAAAGTGACAGTTCTCTACGAAGA TAATGACCTTGCAGTCATTGTCAAGCCTGCTGGTGTGGCTGTGCATGGCA CGGGCTCTTATTCACTAGTAGAGGAATATGCGAATTTTTTGACTCCCACA ACAAGAGGGGAGGAGGAGGCGCTAGACAAGCCGATGCATGCACACCGGCT CGACGCTCCTGTGGGAGGGCTGTTGGTAATCGCAAAAACAAAGACAGCAC TACAAGGTCTACTATCAGCATTTTTGGAACGAAAAGTGAAGAAGACATAT CAAACGATAGTCATTGGTCGGCCTAGTCCTGAGTCGGGAGATATTACAAC AGAAGTAGAGGAAAAGGAGGCATTCACGCATTTCAAGGTCCTCGAGACCG TCCCCTCCCTCACCTTCGGCTGTCTTTCTCTACTGGAACTATCGCCCGAG ACAGGACGCAAGCATCAATTGAGACGGCATTGCCTCGATCTAAATACACC TATATTGGGTGATATCCGCTACGGCCCCCAAAACACCTTGAGGACAAGAG GACTCTTCCTCTGGAGCGTCGGTGTAAGTTTTACCCACCCTGTGACGGGG AAGAATGAGGCGTTCGAGGTGGGCTTGCCTGAGATCTTCGGGAATACTAT GAACATGGAGAGGAGGAAGGCGGAGACACAGCTGGTTCAGGAGAAAGGGA AGGGGGACAAAGTGGAGGTGGATGATAAGGGCAAGGATTAA
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Coding sequence (CDS) from alignment at chr5:447302..448192+

>NO05G01610.1 ID=NO05G01610.1|Name=NO05G01610.1|organism=Nannochloropsis oceanica|type=CDS|length=891bp|location=Sequence derived from alignment at chr5:447302..448192+ (Nannochloropsis oceanica)
ATGTCCAAAGCCCGCAAACTTATCCGCAAAGGTCAAGTCCTCATCAATGA
TAGTAACGGAAATACTTGCGAGGGCACTGTCCGCGGCGGTGACGTCATCA
CAATAGTACCCCCTGAGGCGCCCAAGGAAAAGAAAGGAAAAGGAGGGAAA
GATGGAGGTCAGGGAAGGGGTATCAAGAAAGTGACAGTTCTCTACGAAGA
TAATGACCTTGCAGTCATTGTCAAGCCTGCTGGTGTGGCTGTGCATGGCA
CGGGCTCTTATTCACTAGTAGAGGAATATGCGAATTTTTTGACTCCCACA
ACAAGAGGGGAGGAGGAGGCGCTAGACAAGCCGATGCATGCACACCGGCT
CGACGCTCCTGTGGGAGGGCTGTTGGTAATCGCAAAAACAAAGACAGCAC
TACAAGGTCTACTATCAGCATTTTTGGAACGAAAAGTGAAGAAGACATAT
CAAACGATAGTCATTGGTCGGCCTAGTCCTGAGTCGGGAGATATTACAAC
AGAAGTAGAGGAAAAGGAGGCATTCACGCATTTCAAGGTCCTCGAGACCG
TCCCCTCCCTCACCTTCGGCTGTCTTTCTCTACTGGAACTATCGCCCGAG
ACAGGACGCAAGCATCAATTGAGACGGCATTGCCTCGATCTAAATACACC
TATATTGGGTGATATCCGCTACGGCCCCCAAAACACCTTGAGGACAAGAG
GACTCTTCCTCTGGAGCGTCGGTGTAAGTTTTACCCACCCTGTGACGGGG
AAGAATGAGGCGTTCGAGGTGGGCTTGCCTGAGATCTTCGGGAATACTAT
GAACATGGAGAGGAGGAAGGCGGAGACACAGCTGGTTCAGGAGAAAGGGA
AGGGGGACAAAGTGGAGGTGGATGATAAGGGCAAGGATTAA
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Synonyms
Publications