NO05G01570.1, NO05G01570.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G01570.1
Unique NameNO05G01570.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1074
Alignment locationchr5:437662..438735 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:437662..438735 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G01570.1 vs.
Match: EWM28230.1 (Ubiquitin-conjugating enzyme/RWD [Nannochloropsis gaditana])

HSP 1 Score: 340.1 bits (871), Expect = 8.200e-90
Identity = 204/327 (62.39%), Postives = 254/327 (77.68%), Query Frame = 0 
Query:    1 MDAQQYDEEQAMECESLECILMDDLEVLSTTTPRQYKVRILPFVNGEGENHVAVRATFSIPPTYPDVPAEVSVAAEKGLSSTQCDALEQIMGEKATENVGMAMVYLLVEVIREWLLEHNIAGATDGSMHAEMLKRMHMKEKEQQRATDAEARAANGAANAQLSKEDELMRQRKLDGTPVTPETFMEWRAVFDAEMAAVAAKKAGGGGGGGGGGRMAKATTTVDDRPEKPSGKQMFLMHLAGTADEDEDGAQEDEEATGGEGGKLEVDAGLFDEGDDDDDSDFELDSEDEDENSD--DDSDYGCGGESEESDDGG---KGKSGKGGGG 323
            MD  Q +EEQA+E ESLECILMDDLEVLS + PRQY+VR++P+VNGEGEN+VAV+ATFSIPP YPD  A+VSVAA KGLS++QC  LE++M +KATEN GMAMVYLLV++IREWL+E N+AGATDGSMHAEMLKRMHMKEK+++RA D   RA   A++A LS+ED LMRQ++L+GTPVTPE+F++WR  F+AEMAA A  K    GG G  G+  KA    +    KPSGK+MFL HLAGTA+EDE+GA+ED      EGG+LEV++ LF+E  ++DDSDFEL+SED+++ SD  DDS+     ESEESD      KG+  KGG G
Sbjct:    1 MDPTQCEEEQALEAESLECILMDDLEVLSASVPRQYRVRVVPYVNGEGENYVAVKATFSIPPGYPDTKADVSVAAVKGLSTSQCQELERLMDQKATENEGMAMVYLLVDMIREWLIERNVAGATDGSMHAEMLKRMHMKEKDEKRAADT--RAGEVASSASLSEEDALMRQKRLEGTPVTPESFLKWRTAFEAEMAACAEAK----GGVGVAGKTGKAAG--NGGAVKPSGKEMFLRHLAGTAEEDEEGAEED------EGGRLEVESELFEE--EEDDSDFELESEDDEDESDYGDDSE-----ESEESDAAATRKKGREKKGGDG 306
The following BLAST results are available for this feature:
BLAST of NO05G01570.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28230.18.200e-9062.39Ubiquitin-conjugating enzyme/RWD [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G01570NO05G01570Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G01570.1NO05G01570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G01570.1.cds1NO05G01570.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G01570.1 ID=NO05G01570.1|Name=NO05G01570.1|organism=Nannochloropsis oceanica|type=mRNA|length=1074bp
ATGGACGCGCAACAGTACGACGAGGAACAAGCCATGGAATGCGAGTCACT
GGAGTGCATCTTGATGGACGACTTGGAAGTGTTGTCAACAACCACGCCTC
GGCAATATAAGGTCCGCATCCTTCCCTTTGTAAATGGAGAGGGTGAAAAT
CACGTGGCTGTTCGTGCCACATTTAGCATCCCGCCGACGTACCCCGATGT
GCCGGCCGAGGTGAGCGTCGCGGCGGAGAAGGGGCTGTCCTCAACACAAT
GCGACGCTTTGGAGCAAATAATGGGCGAGAAGGCGACCGAGAATGTGGGC
ATGGCCATGGTGTATTTGTTGGTGGAAGTGATACGAGAGTGGTTGCTCGA
ACACAATATCGCAGGAGCGACTGATGGTTCCATGCATGCGGAGATGCTAA
AGCGAATGCATATGAAAGAAAAGGAACAGCAACGTGCCACGGACGCCGAG
GCCCGCGCTGCAAATGGGGCAGCCAACGCACAATTAAGCAAAGAAGATGA
ATTGATGCGACAGAGGAAGTTGGACGGTACGCCTGTGACACCGGAGACGT
TCATGGAATGGCGCGCGGTGTTCGATGCAGAAATGGCCGCAGTGGCAGCC
AAGAAAGCAGGAGGGGGAGGAGGAGGAGGAGGGGGAGGGAGGATGGCCAA
AGCTACGACAACAGTGGATGACAGGCCTGAAAAACCGTCGGGGAAGCAGA
TGTTTTTGATGCATCTTGCTGGCACGGCGGATGAGGATGAGGACGGTGCG
CAGGAGGATGAGGAAGCTACGGGGGGGGAGGGAGGAAAGTTGGAGGTAGA
TGCAGGGTTGTTTGACGAGGGGGATGATGATGATGACAGTGATTTTGAGC
TAGATTCGGAGGACGAGGACGAGAACAGTGACGATGATAGTGATTATGGT
TGCGGCGGCGAGAGCGAGGAGAGCGATGACGGTGGGAAGGGGAAGAGTGG
AAAAGGAGGGGGGGGAGAGGCGGTGGTGGAAGAGGAGGAAGGAGAGGCAA
AAGAAGCTGAAAAAAGTACATCAACAGGCGATATGCAAGATTTTGAAGAA
CGTGGACATCTAGACAGAGAGTAA
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protein sequence of NO05G01570.1

>NO05G01570.1-protein ID=NO05G01570.1-protein|Name=NO05G01570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=358bp
MDAQQYDEEQAMECESLECILMDDLEVLSTTTPRQYKVRILPFVNGEGEN
HVAVRATFSIPPTYPDVPAEVSVAAEKGLSSTQCDALEQIMGEKATENVG
MAMVYLLVEVIREWLLEHNIAGATDGSMHAEMLKRMHMKEKEQQRATDAE
ARAANGAANAQLSKEDELMRQRKLDGTPVTPETFMEWRAVFDAEMAAVAA
KKAGGGGGGGGGGRMAKATTTVDDRPEKPSGKQMFLMHLAGTADEDEDGA
QEDEEATGGEGGKLEVDAGLFDEGDDDDDSDFELDSEDEDENSDDDSDYG
CGGESEESDDGGKGKSGKGGGGEAVVEEEEGEAKEAEKSTSTGDMQDFEE
RGHLDRE*
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mRNA from alignment at chr5:437662..438735+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G01570.1 ID=NO05G01570.1|Name=NO05G01570.1|organism=Nannochloropsis oceanica|type=mRNA|length=1074bp|location=Sequence derived from alignment at chr5:437662..438735+ (Nannochloropsis oceanica)
ATGGACGCGCAACAGTACGACGAGGAACAAGCCATGGAATGCGAGTCACT
GGAGTGCATCTTGATGGACGACTTGGAAGTGTTGTCAACAACCACGCCTC
GGCAATATAAGGTCCGCATCCTTCCCTTTGTAAATGGAGAGGGTGAAAAT
CACGTGGCTGTTCGTGCCACATTTAGCATCCCGCCGACGTACCCCGATGT
GCCGGCCGAGGTGAGCGTCGCGGCGGAGAAGGGGCTGTCCTCAACACAAT
GCGACGCTTTGGAGCAAATAATGGGCGAGAAGGCGACCGAGAATGTGGGC
ATGGCCATGGTGTATTTGTTGGTGGAAGTGATACGAGAGTGGTTGCTCGA
ACACAATATCGCAGGAGCGACTGATGGTTCCATGCATGCGGAGATGCTAA
AGCGAATGCATATGAAAGAAAAGGAACAGCAACGTGCCACGGACGCCGAG
GCCCGCGCTGCAAATGGGGCAGCCAACGCACAATTAAGCAAAGAAGATGA
ATTGATGCGACAGAGGAAGTTGGACGGTACGCCTGTGACACCGGAGACGT
TCATGGAATGGCGCGCGGTGTTCGATGCAGAAATGGCCGCAGTGGCAGCC
AAGAAAGCAGGAGGGGGAGGAGGAGGAGGAGGGGGAGGGAGGATGGCCAA
AGCTACGACAACAGTGGATGACAGGCCTGAAAAACCGTCGGGGAAGCAGA
TGTTTTTGATGCATCTTGCTGGCACGGCGGATGAGGATGAGGACGGTGCG
CAGGAGGATGAGGAAGCTACGGGGGGGGAGGGAGGAAAGTTGGAGGTAGA
TGCAGGGTTGTTTGACGAGGGGGATGATGATGATGACAGTGATTTTGAGC
TAGATTCGGAGGACGAGGACGAGAACAGTGACGATGATAGTGATTATGGT
TGCGGCGGCGAGAGCGAGGAGAGCGATGACGGTGGGAAGGGGAAGAGTGG
AAAAGGAGGGGGGGGAGAGGCGGTGGTGGAAGAGGAGGAAGGAGAGGCAA
AAGAAGCTGAAAAAAGTACATCAACAGGCGATATGCAAGATTTTGAAGAA
CGTGGACATCTAGACAGAGAGTAA
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Coding sequence (CDS) from alignment at chr5:437662..438735+

>NO05G01570.1 ID=NO05G01570.1|Name=NO05G01570.1|organism=Nannochloropsis oceanica|type=CDS|length=1074bp|location=Sequence derived from alignment at chr5:437662..438735+ (Nannochloropsis oceanica)
ATGGACGCGCAACAGTACGACGAGGAACAAGCCATGGAATGCGAGTCACT
GGAGTGCATCTTGATGGACGACTTGGAAGTGTTGTCAACAACCACGCCTC
GGCAATATAAGGTCCGCATCCTTCCCTTTGTAAATGGAGAGGGTGAAAAT
CACGTGGCTGTTCGTGCCACATTTAGCATCCCGCCGACGTACCCCGATGT
GCCGGCCGAGGTGAGCGTCGCGGCGGAGAAGGGGCTGTCCTCAACACAAT
GCGACGCTTTGGAGCAAATAATGGGCGAGAAGGCGACCGAGAATGTGGGC
ATGGCCATGGTGTATTTGTTGGTGGAAGTGATACGAGAGTGGTTGCTCGA
ACACAATATCGCAGGAGCGACTGATGGTTCCATGCATGCGGAGATGCTAA
AGCGAATGCATATGAAAGAAAAGGAACAGCAACGTGCCACGGACGCCGAG
GCCCGCGCTGCAAATGGGGCAGCCAACGCACAATTAAGCAAAGAAGATGA
ATTGATGCGACAGAGGAAGTTGGACGGTACGCCTGTGACACCGGAGACGT
TCATGGAATGGCGCGCGGTGTTCGATGCAGAAATGGCCGCAGTGGCAGCC
AAGAAAGCAGGAGGGGGAGGAGGAGGAGGAGGGGGAGGGAGGATGGCCAA
AGCTACGACAACAGTGGATGACAGGCCTGAAAAACCGTCGGGGAAGCAGA
TGTTTTTGATGCATCTTGCTGGCACGGCGGATGAGGATGAGGACGGTGCG
CAGGAGGATGAGGAAGCTACGGGGGGGGAGGGAGGAAAGTTGGAGGTAGA
TGCAGGGTTGTTTGACGAGGGGGATGATGATGATGACAGTGATTTTGAGC
TAGATTCGGAGGACGAGGACGAGAACAGTGACGATGATAGTGATTATGGT
TGCGGCGGCGAGAGCGAGGAGAGCGATGACGGTGGGAAGGGGAAGAGTGG
AAAAGGAGGGGGGGGAGAGGCGGTGGTGGAAGAGGAGGAAGGAGAGGCAA
AAGAAGCTGAAAAAAGTACATCAACAGGCGATATGCAAGATTTTGAAGAA
CGTGGACATCTAGACAGAGAGTAA
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Synonyms
Publications