NO05G01560.1, NO05G01560.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G01560.1
Unique NameNO05G01560.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length852
Alignment locationchr5:436245..437321 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:436245..437321 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO05G01560.1 vs.
Match: EWM28187.1 (glutaredoxin 2 [Nannochloropsis gaditana])

HSP 1 Score: 404.8 bits (1039), Expect = 2.200e-109
Identity = 198/283 (69.96%), Postives = 233/283 (82.33%), Query Frame = 0
Query:    1 MPRLLQALLMLLLCSSIAGFTSHRFVSAAASKVAVIRRRYASSRSTTTTMMSPVLAKRPNLYVYDHCPFCVRARMIFGLKQVPHQLIFLDNDDIETPTALVGKKVVPILEMVNTEGKTVVMPESMDIVKYVDGDSRWGKPLLKPATNREDIKAFFDSIADLSRRCTRPRFALSSILPEFHTPAARAAFVRNHPFKTGPFDYTENLMNTKLVSDLGEKLKDLDGLIFSADCVTEGGMSYDDIDVFGKTRGLTVVKGLVLPPKLKAYLERMAEKTEIPLYHQMGL 284
            MPRLLQ +LML+ CS IAGF   R  +        +  R A+ R     MMS  L KRPNLY+YDHCPFCVRAR+IFGLK++PHQLIFLDNDD +TPTALVGKK+VPILEM++ +G+ VVMPESMDIVK +D D RWG P+L+  ++REDIKAFFDSIADLSRRCTRPRFALSS+LPEFHTPAARAAFVRNHPFK+ PFDYTENL N  LV+DL  +L++LD ++FS +CVTEGG+SYDD+D+FGK RGLTVV GLVLPP+LKAY+E   EKTEIPLY+QMGL
Sbjct:    1 MPRLLQVVLMLMFCSRIAGFCKPRMGTLPVR----LPSRAAAHRGLK--MMSTQLDKRPNLYIYDHCPFCVRARIIFGLKRIPHQLIFLDNDDADTPTALVGKKMVPILEMIDAQGERVVMPESMDIVKLIDEDPRWGPPVLRRGSDREDIKAFFDSIADLSRRCTRPRFALSSVLPEFHTPAARAAFVRNHPFKSPPFDYTENLQNKSLVADLSARLRELDAMLFSDECVTEGGVSYDDVDLFGKVRGLTVVAGLVLPPRLKAYVEAFGEKTEIPLYYQMGL 277          
The following BLAST results are available for this feature:
BLAST of NO05G01560.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28187.12.200e-10969.96glutaredoxin 2 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G01560NO05G01560Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G01560.1NO05G01560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G01560.1.cds1NO05G01560.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G01560.1.cds2NO05G01560.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G01560.1 ID=NO05G01560.1|Name=NO05G01560.1|organism=Nannochloropsis oceanica|type=mRNA|length=852bp
ATGCCTCGCCTGCTTCAGGCTTTGTTGATGCTGTTGTTGTGCTCGAGCAT
TGCCGGTTTTACGAGTCATCGCTTCGTCTCGGCCGCCGCATCCAAGGTTG
CCGTCATAAGGCGCCGCTACGCCTCTTCGAGATCTACAACAACCACTATG
ATGTCCCCTGTCCTGGCCAAGCGGCCGAATTTGTATGTATACGATCATTG
CCCTTTCTGCGTTCGTGCACGTATGATTTTTGGTTTGAAACAGGTACCGC
ATCAACTCATCTTTTTGGACAACGATGATATTGAGACACCAACGGCGTTG
GTGGGGAAGAAAGTGGTGCCTATATTAGAGATGGTGAACACGGAGGGAAA
GACGGTGGTGATGCCCGAATCGATGGATATCGTGAAGTACGTCGATGGAG
ACTCTCGCTGGGGGAAACCATTACTCAAGCCCGCGACCAACAGGGAGGAT
ATCAAGGCTTTTTTTGATTCAATTGCTGATTTGAGCCGACGGTGTACACG
TCCGAGGTTTGCACTGTCAAGCATTTTGCCTGAATTCCATACGCCTGCCG
CAAGGGCTGCGTTTGTGAGGAACCACCCTTTCAAAACAGGTCCCTTTGAT
TACACAGAAAATTTGATGAATACTAAATTAGTGTCTGATCTGGGCGAGAA
ACTCAAGGATCTGGACGGGCTGATATTTTCGGCAGATTGCGTGACTGAGG
GAGGGATGTCGTACGATGACATCGATGTGTTTGGGAAGACAAGGGGATTG
ACGGTAGTAAAAGGTTTGGTGTTGCCTCCCAAGCTGAAGGCGTACTTGGA
ACGAATGGCGGAAAAGACTGAGATCCCTTTGTATCATCAGATGGGGCTGT
AA
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protein sequence of NO05G01560.1

>NO05G01560.1-protein ID=NO05G01560.1-protein|Name=NO05G01560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=284bp
MPRLLQALLMLLLCSSIAGFTSHRFVSAAASKVAVIRRRYASSRSTTTTM
MSPVLAKRPNLYVYDHCPFCVRARMIFGLKQVPHQLIFLDNDDIETPTAL
VGKKVVPILEMVNTEGKTVVMPESMDIVKYVDGDSRWGKPLLKPATNRED
IKAFFDSIADLSRRCTRPRFALSSILPEFHTPAARAAFVRNHPFKTGPFD
YTENLMNTKLVSDLGEKLKDLDGLIFSADCVTEGGMSYDDIDVFGKTRGL
TVVKGLVLPPKLKAYLERMAEKTEIPLYHQMGL*
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mRNA from alignment at chr5:436245..437321-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G01560.1 ID=NO05G01560.1|Name=NO05G01560.1|organism=Nannochloropsis oceanica|type=mRNA|length=1077bp|location=Sequence derived from alignment at chr5:436245..437321- (Nannochloropsis oceanica)
ATGCCTCGCCTGCTTCAGGCTTTGTTGATGCTGTTGTTGTGCTCGAGCAT TGCCGGTTTTACGAGTCATCGCTTCGTCTCGGCCGCCGCATCCAAGGTCT GTAGGGAAAAGGAAGACGTGGTCTTGTCGCCAATAGAACTCAATTAGACG CCGCCGTACTGAACGTTACCCGCCTGTCTGGGACAGAATGCTGTTAAGTC TTGCTTGAGATCCTCAACTTTATTTCATGTCACTATAATCGTCTAGGACT CTATTTTTGGTCTCTGGGGCCTTCCATCGCCCCAGCAATGTCTCAATTCT TCTACTTCCCCACGAACACAGGTTGCCGTCATAAGGCGCCGCTACGCCTC TTCGAGATCTACAACAACCACTATGATGTCCCCTGTCCTGGCCAAGCGGC CGAATTTGTATGTATACGATCATTGCCCTTTCTGCGTTCGTGCACGTATG ATTTTTGGTTTGAAACAGGTACCGCATCAACTCATCTTTTTGGACAACGA TGATATTGAGACACCAACGGCGTTGGTGGGGAAGAAAGTGGTGCCTATAT TAGAGATGGTGAACACGGAGGGAAAGACGGTGGTGATGCCCGAATCGATG GATATCGTGAAGTACGTCGATGGAGACTCTCGCTGGGGGAAACCATTACT CAAGCCCGCGACCAACAGGGAGGATATCAAGGCTTTTTTTGATTCAATTG CTGATTTGAGCCGACGGTGTACACGTCCGAGGTTTGCACTGTCAAGCATT TTGCCTGAATTCCATACGCCTGCCGCAAGGGCTGCGTTTGTGAGGAACCA CCCTTTCAAAACAGGTCCCTTTGATTACACAGAAAATTTGATGAATACTA AATTAGTGTCTGATCTGGGCGAGAAACTCAAGGATCTGGACGGGCTGATA TTTTCGGCAGATTGCGTGACTGAGGGAGGGATGTCGTACGATGACATCGA TGTGTTTGGGAAGACAAGGGGATTGACGGTAGTAAAAGGTTTGGTGTTGC CTCCCAAGCTGAAGGCGTACTTGGAACGAATGGCGGAAAAGACTGAGATC CCTTTGTATCATCAGATGGGGCTGTAA
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Coding sequence (CDS) from alignment at chr5:436245..437321-

>NO05G01560.1 ID=NO05G01560.1|Name=NO05G01560.1|organism=Nannochloropsis oceanica|type=CDS|length=852bp|location=Sequence derived from alignment at chr5:436245..437321- (Nannochloropsis oceanica)
ATGCCTCGCCTGCTTCAGGCTTTGTTGATGCTGTTGTTGTGCTCGAGCAT
TGCCGGTTTTACGAGTCATCGCTTCGTCTCGGCCGCCGCATCCAAGGTTG
CCGTCATAAGGCGCCGCTACGCCTCTTCGAGATCTACAACAACCACTATG
ATGTCCCCTGTCCTGGCCAAGCGGCCGAATTTGTATGTATACGATCATTG
CCCTTTCTGCGTTCGTGCACGTATGATTTTTGGTTTGAAACAGGTACCGC
ATCAACTCATCTTTTTGGACAACGATGATATTGAGACACCAACGGCGTTG
GTGGGGAAGAAAGTGGTGCCTATATTAGAGATGGTGAACACGGAGGGAAA
GACGGTGGTGATGCCCGAATCGATGGATATCGTGAAGTACGTCGATGGAG
ACTCTCGCTGGGGGAAACCATTACTCAAGCCCGCGACCAACAGGGAGGAT
ATCAAGGCTTTTTTTGATTCAATTGCTGATTTGAGCCGACGGTGTACACG
TCCGAGGTTTGCACTGTCAAGCATTTTGCCTGAATTCCATACGCCTGCCG
CAAGGGCTGCGTTTGTGAGGAACCACCCTTTCAAAACAGGTCCCTTTGAT
TACACAGAAAATTTGATGAATACTAAATTAGTGTCTGATCTGGGCGAGAA
ACTCAAGGATCTGGACGGGCTGATATTTTCGGCAGATTGCGTGACTGAGG
GAGGGATGTCGTACGATGACATCGATGTGTTTGGGAAGACAAGGGGATTG
ACGGTAGTAAAAGGTTTGGTGTTGCCTCCCAAGCTGAAGGCGTACTTGGA
ACGAATGGCGGAAAAGACTGAGATCCCTTTGTATCATCAGATGGGGCTGT
AA
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Synonyms
Publications