NO05G01360.1, NO05G01360.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G01360.1
Unique NameNO05G01360.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1758
Alignment locationchr5:388908..390665 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:388908..390665 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G01360.1 vs.
Match: KYQ91309.1 (suc1-sucrose proton symporter [Tieghemostelium lacteum])

HSP 1 Score: 245.4 bits (625), Expect = 4.500e-61
Identity = 148/448 (33.04%), Postives = 243/448 (54.24%), Query Frame = 0 
Query:   61 KLLAATVVSLGVQVDWAVQAALLMPYLLVIGVPYKYYTIVCLCGPISGLIAQPYMGVFSDHCHSRFGRRRPFIFGSVLLIVFGFMLMGNATHLGDLLPGGKAQRGGDMAAAIIGLWIIDMANNGLAGPCRALVADIAPAEQQRLGNALMAVWSSIGSVIGFVLCAIPWTRFLPNIESPHCRMQCADLRVVAVICAICLLVTSFITIYTTHEEPLMADSEHSPQGERSPLGLIHKIFNTLFNMPPALARVCAFQFFSWWSWFHHTLFIAVWVGKVVNQGNGGAPVGSEEYIRYERGIKAASLGFVLFAVLTGLVSMALPRILKRFKTRPTLAVAQIFLAGCYGLTFAVPRRQVYGAAVVIGLFALPWAVFLVVPWAMIAQMA-----PPDKRGLYLGSLNIFACVPQVLVALSGPVLVRIFGEERATQAALGFGAILALVSLLLVPRLI 504
            KL+  ++  LGVQ  WA+Q A   P  L +GV   + + + + GP+SGLI QP +GV SD   S+FGRR+P+IF   + IV G +L+ NA  LG LL   K  +   +  AIIG W++D++NN + GPCRAL+ D+A   QQ LG++L ++    G+++G+++ ++  +   P +++        D+R +  +  + L+   F T+    E+     + ++     +P  +   +F  +  MPP L R+C  QFFSW  WF   LF   WVG  V  GN  AP G+EE  R++ G++  SLG    ++L  L+S  +P + K    +    V  +  A  + L F +  +    A V+I    +PW++ ++VP+A++   A       +  GL +G LNIF  +PQ+LVA+    ++ IF    A   +L  G+I + ++ LL+ R+I
Sbjct:   84 KLIVLSLSFLGVQFGWALQIAYSTPLFLELGVSKFWVSFIWIAGPVSGLIVQPIVGVLSDRSESKFGRRKPYIFFGTIFIVVGLLLISNAQSLGSLLGDSKDTKKLSIFFAIIGFWVLDLSNNAVQGPCRALLVDVASPSQQGLGSSLFSIMLGFGNLLGYLMGSLRLSLIFPFLKT--------DIRALFTLSILVLIFCIFFTLICIQEKKFSRINANT----ENPFSV---LFKGILRMPPYLKRLCCVQFFSWIGWFSFILFATTWVGVNVYGGNPDAPEGTEERERFQLGVRIGSLGLTFSSLLNILISFLIPLLFKLVGIKIVYFVGTLIQAVTFLLFFFLQSK--IAALVLITFTGIPWSIVMIVPFAIVGLGANETQYSTENSGLQIGILNIFIVLPQLLVAVGISFVIEIFNGNVA--YSLLTGSISSFIATLLIFRII 512
The following BLAST results are available for this feature:
BLAST of NO05G01360.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
KYQ91309.14.500e-6133.04suc1-sucrose proton symporter [Tieghemostelium lac... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G01360NO05G01360Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G01360.1NO05G01360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G01360.1.cds1NO05G01360.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G01360.1 ID=NO05G01360.1|Name=NO05G01360.1|organism=Nannochloropsis oceanica|type=mRNA|length=1758bp
ATGACCAAGAACAAGTCTTACGCTACCGAATGCAAAGATAGTGATGATGC
TGGCTTAAGAACAATCCAATTGCAAGCTGCTGTGACCACTGCCAAAGAAA
TGTCGCCGCCCGCTCCTGCGCCTCAGCCTACCACAGCTTCCCGCCCTTCC
GTAATGACGCCTCCGCACCAGACCATGGCCAAGCTTTTGGCGGCCACGGT
CGTTTCACTTGGGGTACAAGTAGACTGGGCGGTGCAAGCTGCTTTGCTCA
TGCCATATTTGCTGGTGATCGGCGTGCCTTACAAGTACTATACCATCGTC
TGTCTTTGCGGCCCAATTTCTGGCTTGATCGCGCAGCCTTACATGGGCGT
CTTTTCCGACCACTGCCACTCCAGATTTGGCCGCCGCCGTCCCTTCATTT
TTGGGAGCGTCCTTTTGATTGTATTTGGATTTATGCTGATGGGCAACGCC
ACCCACCTTGGAGACTTGTTGCCTGGGGGAAAAGCGCAGCGCGGTGGTGA
TATGGCCGCCGCCATTATTGGGCTTTGGATCATTGACATGGCCAACAACG
GGCTGGCCGGCCCTTGCCGAGCACTGGTTGCTGACATTGCGCCTGCCGAG
CAACAGCGTTTGGGCAATGCTTTGATGGCCGTGTGGTCTTCCATTGGTAG
TGTTATTGGCTTCGTGTTGTGTGCCATTCCCTGGACGCGTTTCCTCCCCA
ACATTGAGTCTCCTCATTGTCGGATGCAATGTGCGGACCTCCGCGTTGTT
GCTGTCATTTGTGCAATCTGCCTGTTGGTGACCTCCTTCATTACCATCTA
TACCACGCACGAAGAGCCCTTGATGGCGGACAGTGAGCACTCACCGCAAG
GCGAAAGGTCTCCCTTGGGCCTCATCCACAAAATTTTCAATACGCTTTTC
AACATGCCTCCGGCCTTGGCCCGGGTGTGTGCATTCCAATTCTTCTCCTG
GTGGTCCTGGTTTCATCACACCCTTTTTATCGCTGTATGGGTGGGTAAGG
TCGTAAACCAAGGAAACGGCGGGGCGCCGGTTGGTTCTGAAGAGTACATT
CGCTACGAGCGGGGCATCAAAGCTGCCTCTCTCGGCTTCGTGCTTTTTGC
TGTCTTGACAGGCCTCGTCTCCATGGCCTTACCCCGCATCCTCAAGCGTT
TCAAGACCCGTCCTACCCTCGCCGTAGCCCAGATTTTTCTCGCCGGCTGC
TATGGTCTGACTTTTGCTGTCCCTCGACGCCAGGTCTACGGTGCCGCAGT
GGTCATTGGCCTCTTTGCCTTGCCCTGGGCCGTCTTTCTCGTCGTGCCCT
GGGCAATGATTGCCCAAATGGCCCCACCAGACAAACGAGGCCTCTACCTC
GGTAGCCTCAATATTTTTGCGTGTGTACCTCAAGTCCTTGTCGCACTGTC
CGGGCCTGTGCTTGTCAGGATTTTTGGAGAGGAAAGAGCGACGCAAGCAG
CACTTGGCTTTGGTGCGATTTTGGCCTTGGTCTCTTTATTGTTGGTCCCC
AGGCTCATCACCAAGTCCCACCCTCCTGTGGCTGCACCATTGGTGATTGA
AAGGATGGAAATGGAGGGAGATGAGGCGGGAAGAGCACTGGCCGCCACAC
CCTCAAGACGGTCTGAGGAAGAGGAGGAAAGGGCTGCGTTTGCGGGAGGC
ATGACCTCGGGGCTGCCGTATTTGGATGAGGCCAAGGAGGAGACGATTGA
GGGGTTAGTGGAGCAGCCGTTACTTCGCATTTATCGGGAGTTGTCTATGG
GGTCATAG
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protein sequence of NO05G01360.1

>NO05G01360.1-protein ID=NO05G01360.1-protein|Name=NO05G01360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=586bp
MTKNKSYATECKDSDDAGLRTIQLQAAVTTAKEMSPPAPAPQPTTASRPS
VMTPPHQTMAKLLAATVVSLGVQVDWAVQAALLMPYLLVIGVPYKYYTIV
CLCGPISGLIAQPYMGVFSDHCHSRFGRRRPFIFGSVLLIVFGFMLMGNA
THLGDLLPGGKAQRGGDMAAAIIGLWIIDMANNGLAGPCRALVADIAPAE
QQRLGNALMAVWSSIGSVIGFVLCAIPWTRFLPNIESPHCRMQCADLRVV
AVICAICLLVTSFITIYTTHEEPLMADSEHSPQGERSPLGLIHKIFNTLF
NMPPALARVCAFQFFSWWSWFHHTLFIAVWVGKVVNQGNGGAPVGSEEYI
RYERGIKAASLGFVLFAVLTGLVSMALPRILKRFKTRPTLAVAQIFLAGC
YGLTFAVPRRQVYGAAVVIGLFALPWAVFLVVPWAMIAQMAPPDKRGLYL
GSLNIFACVPQVLVALSGPVLVRIFGEERATQAALGFGAILALVSLLLVP
RLITKSHPPVAAPLVIERMEMEGDEAGRALAATPSRRSEEEEERAAFAGG
MTSGLPYLDEAKEETIEGLVEQPLLRIYRELSMGS*
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mRNA from alignment at chr5:388908..390665-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G01360.1 ID=NO05G01360.1|Name=NO05G01360.1|organism=Nannochloropsis oceanica|type=mRNA|length=1758bp|location=Sequence derived from alignment at chr5:388908..390665- (Nannochloropsis oceanica)
ATGACCAAGAACAAGTCTTACGCTACCGAATGCAAAGATAGTGATGATGC
TGGCTTAAGAACAATCCAATTGCAAGCTGCTGTGACCACTGCCAAAGAAA
TGTCGCCGCCCGCTCCTGCGCCTCAGCCTACCACAGCTTCCCGCCCTTCC
GTAATGACGCCTCCGCACCAGACCATGGCCAAGCTTTTGGCGGCCACGGT
CGTTTCACTTGGGGTACAAGTAGACTGGGCGGTGCAAGCTGCTTTGCTCA
TGCCATATTTGCTGGTGATCGGCGTGCCTTACAAGTACTATACCATCGTC
TGTCTTTGCGGCCCAATTTCTGGCTTGATCGCGCAGCCTTACATGGGCGT
CTTTTCCGACCACTGCCACTCCAGATTTGGCCGCCGCCGTCCCTTCATTT
TTGGGAGCGTCCTTTTGATTGTATTTGGATTTATGCTGATGGGCAACGCC
ACCCACCTTGGAGACTTGTTGCCTGGGGGAAAAGCGCAGCGCGGTGGTGA
TATGGCCGCCGCCATTATTGGGCTTTGGATCATTGACATGGCCAACAACG
GGCTGGCCGGCCCTTGCCGAGCACTGGTTGCTGACATTGCGCCTGCCGAG
CAACAGCGTTTGGGCAATGCTTTGATGGCCGTGTGGTCTTCCATTGGTAG
TGTTATTGGCTTCGTGTTGTGTGCCATTCCCTGGACGCGTTTCCTCCCCA
ACATTGAGTCTCCTCATTGTCGGATGCAATGTGCGGACCTCCGCGTTGTT
GCTGTCATTTGTGCAATCTGCCTGTTGGTGACCTCCTTCATTACCATCTA
TACCACGCACGAAGAGCCCTTGATGGCGGACAGTGAGCACTCACCGCAAG
GCGAAAGGTCTCCCTTGGGCCTCATCCACAAAATTTTCAATACGCTTTTC
AACATGCCTCCGGCCTTGGCCCGGGTGTGTGCATTCCAATTCTTCTCCTG
GTGGTCCTGGTTTCATCACACCCTTTTTATCGCTGTATGGGTGGGTAAGG
TCGTAAACCAAGGAAACGGCGGGGCGCCGGTTGGTTCTGAAGAGTACATT
CGCTACGAGCGGGGCATCAAAGCTGCCTCTCTCGGCTTCGTGCTTTTTGC
TGTCTTGACAGGCCTCGTCTCCATGGCCTTACCCCGCATCCTCAAGCGTT
TCAAGACCCGTCCTACCCTCGCCGTAGCCCAGATTTTTCTCGCCGGCTGC
TATGGTCTGACTTTTGCTGTCCCTCGACGCCAGGTCTACGGTGCCGCAGT
GGTCATTGGCCTCTTTGCCTTGCCCTGGGCCGTCTTTCTCGTCGTGCCCT
GGGCAATGATTGCCCAAATGGCCCCACCAGACAAACGAGGCCTCTACCTC
GGTAGCCTCAATATTTTTGCGTGTGTACCTCAAGTCCTTGTCGCACTGTC
CGGGCCTGTGCTTGTCAGGATTTTTGGAGAGGAAAGAGCGACGCAAGCAG
CACTTGGCTTTGGTGCGATTTTGGCCTTGGTCTCTTTATTGTTGGTCCCC
AGGCTCATCACCAAGTCCCACCCTCCTGTGGCTGCACCATTGGTGATTGA
AAGGATGGAAATGGAGGGAGATGAGGCGGGAAGAGCACTGGCCGCCACAC
CCTCAAGACGGTCTGAGGAAGAGGAGGAAAGGGCTGCGTTTGCGGGAGGC
ATGACCTCGGGGCTGCCGTATTTGGATGAGGCCAAGGAGGAGACGATTGA
GGGGTTAGTGGAGCAGCCGTTACTTCGCATTTATCGGGAGTTGTCTATGG
GGTCATAG
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Coding sequence (CDS) from alignment at chr5:388908..390665-

>NO05G01360.1 ID=NO05G01360.1|Name=NO05G01360.1|organism=Nannochloropsis oceanica|type=CDS|length=1758bp|location=Sequence derived from alignment at chr5:388908..390665- (Nannochloropsis oceanica)
ATGACCAAGAACAAGTCTTACGCTACCGAATGCAAAGATAGTGATGATGC
TGGCTTAAGAACAATCCAATTGCAAGCTGCTGTGACCACTGCCAAAGAAA
TGTCGCCGCCCGCTCCTGCGCCTCAGCCTACCACAGCTTCCCGCCCTTCC
GTAATGACGCCTCCGCACCAGACCATGGCCAAGCTTTTGGCGGCCACGGT
CGTTTCACTTGGGGTACAAGTAGACTGGGCGGTGCAAGCTGCTTTGCTCA
TGCCATATTTGCTGGTGATCGGCGTGCCTTACAAGTACTATACCATCGTC
TGTCTTTGCGGCCCAATTTCTGGCTTGATCGCGCAGCCTTACATGGGCGT
CTTTTCCGACCACTGCCACTCCAGATTTGGCCGCCGCCGTCCCTTCATTT
TTGGGAGCGTCCTTTTGATTGTATTTGGATTTATGCTGATGGGCAACGCC
ACCCACCTTGGAGACTTGTTGCCTGGGGGAAAAGCGCAGCGCGGTGGTGA
TATGGCCGCCGCCATTATTGGGCTTTGGATCATTGACATGGCCAACAACG
GGCTGGCCGGCCCTTGCCGAGCACTGGTTGCTGACATTGCGCCTGCCGAG
CAACAGCGTTTGGGCAATGCTTTGATGGCCGTGTGGTCTTCCATTGGTAG
TGTTATTGGCTTCGTGTTGTGTGCCATTCCCTGGACGCGTTTCCTCCCCA
ACATTGAGTCTCCTCATTGTCGGATGCAATGTGCGGACCTCCGCGTTGTT
GCTGTCATTTGTGCAATCTGCCTGTTGGTGACCTCCTTCATTACCATCTA
TACCACGCACGAAGAGCCCTTGATGGCGGACAGTGAGCACTCACCGCAAG
GCGAAAGGTCTCCCTTGGGCCTCATCCACAAAATTTTCAATACGCTTTTC
AACATGCCTCCGGCCTTGGCCCGGGTGTGTGCATTCCAATTCTTCTCCTG
GTGGTCCTGGTTTCATCACACCCTTTTTATCGCTGTATGGGTGGGTAAGG
TCGTAAACCAAGGAAACGGCGGGGCGCCGGTTGGTTCTGAAGAGTACATT
CGCTACGAGCGGGGCATCAAAGCTGCCTCTCTCGGCTTCGTGCTTTTTGC
TGTCTTGACAGGCCTCGTCTCCATGGCCTTACCCCGCATCCTCAAGCGTT
TCAAGACCCGTCCTACCCTCGCCGTAGCCCAGATTTTTCTCGCCGGCTGC
TATGGTCTGACTTTTGCTGTCCCTCGACGCCAGGTCTACGGTGCCGCAGT
GGTCATTGGCCTCTTTGCCTTGCCCTGGGCCGTCTTTCTCGTCGTGCCCT
GGGCAATGATTGCCCAAATGGCCCCACCAGACAAACGAGGCCTCTACCTC
GGTAGCCTCAATATTTTTGCGTGTGTACCTCAAGTCCTTGTCGCACTGTC
CGGGCCTGTGCTTGTCAGGATTTTTGGAGAGGAAAGAGCGACGCAAGCAG
CACTTGGCTTTGGTGCGATTTTGGCCTTGGTCTCTTTATTGTTGGTCCCC
AGGCTCATCACCAAGTCCCACCCTCCTGTGGCTGCACCATTGGTGATTGA
AAGGATGGAAATGGAGGGAGATGAGGCGGGAAGAGCACTGGCCGCCACAC
CCTCAAGACGGTCTGAGGAAGAGGAGGAAAGGGCTGCGTTTGCGGGAGGC
ATGACCTCGGGGCTGCCGTATTTGGATGAGGCCAAGGAGGAGACGATTGA
GGGGTTAGTGGAGCAGCCGTTACTTCGCATTTATCGGGAGTTGTCTATGG
GGTCATAG
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Synonyms
Publications