NO05G01350.1, NO05G01350.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G01350.1
Unique NameNO05G01350.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1107
Alignment locationchr5:387462..388568 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:387462..388568 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G01350.1 vs.
Match: EWM28201.1 (methyltransferase type 11 [Nannochloropsis gaditana])

HSP 1 Score: 577.4 bits (1487), Expect = 3.200e-161
Identity = 284/358 (79.33%), Postives = 318/358 (88.83%), Query Frame = 0 
Query:   11 IVLLFSTSTHAFRHTTLKMMSSSTDMPLSASTRTPTVLRQPLSYRVADKVVGTLFGIDPIFNLLAKKARESIMVRGEKIGVSWVERVDGLKQHMDELEKQYEEINRPLVVTPEYYKKPFHAYKEGNLGWAPAIEFEAASLSVHSPTFTTGPTELEEDGDAKLRGNFHARMREMLSTYTFTPSRIIDVGCAAGMSTLRLQASFPEAEVMGIDLSPYMLAVAKYNLNSRPELAQLKSERRVDYMHAAGEDTGLPDASVDLVSICLVNHELPNEAARKVFREAYRLLRPGGALAFMDMDPTAMAFQRIVNNPMLFALFKSTEPWLKEYVVLDLPSELQAAGFSRMDVKGNSPRHRTVVAFK 369
            +V++F+    AFR   + +MSSS  + +   + TPT LRQPLSYRVADKVVGTLF IDPIFN+LAKKARESI+ RGEKIGVSW ERV+GLK+HM+ELE +YE ++R  VV PEYY+KPFHAYKEGNLGWAPAIEFEAASLSVH+PT+T GPTEL+EDGDAKLRGNFH RM+EML+ ++F PSRI+DVGCAAGMST  LQASFPEAEV+G+DLSPYMLAVAKYNLN+RPE AQ+K E RVDY+HAAGED GLPDASVDLVSICLVNHELPNEAAR VFREA+R+LRPGGALAFMDMDPTA AFQRIV NPMLFALFKSTEPWLKEYVVLDLPSEL  AGFS MDV+GNSPRHRTVVAFK
Sbjct:   14 LVIVFNACVQAFRPKPI-VMSSSPSLEVPPISPTPTELRQPLSYRVADKVVGTLFSIDPIFNVLAKKARESIIARGEKIGVSWSERVEGLKRHMEELETEYEGVHRKRVVIPEYYQKPFHAYKEGNLGWAPAIEFEAASLSVHAPTYTRGPTELQEDGDAKLRGNFHKRMKEMLAKFSFVPSRIVDVGCAAGMSTFCLQASFPEAEVLGVDLSPYMLAVAKYNLNARPEFAQVKREGRVDYVHAAGEDLGLPDASVDLVSICLVNHELPNEAARAVFREAHRVLRPGGALAFMDMDPTAPAFQRIVKNPMLFALFKSTEPWLKEYVVLDLPSELARAGFSHMDVRGNSPRHRTVVAFK 370
The following BLAST results are available for this feature:
BLAST of NO05G01350.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28201.13.200e-16179.33methyltransferase type 11 [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G01350NO05G01350Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G01350.1NO05G01350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G01350.1.cds1NO05G01350.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G01350.1 ID=NO05G01350.1|Name=NO05G01350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1107bp
ATGCTGCGCCTTCCAAGACCCATCCTCTTGATCGTCCTTCTCTTTTCCAC
CTCGACCCATGCATTCCGTCACACAACCCTCAAGATGATGTCCTCCAGCA
CGGACATGCCCTTATCGGCCAGCACCAGGACGCCAACCGTACTCCGACAA
CCTCTGTCGTATCGCGTCGCGGACAAAGTCGTCGGCACGCTCTTTGGAAT
CGACCCCATTTTCAACCTGTTGGCCAAGAAGGCCCGGGAATCGATCATGG
TCCGGGGGGAGAAGATTGGTGTGTCGTGGGTGGAGAGGGTGGACGGCCTA
AAGCAACACATGGACGAGCTCGAGAAGCAGTACGAGGAAATCAACCGGCC
CCTCGTTGTGACCCCCGAATACTACAAGAAGCCTTTCCATGCATATAAGG
AGGGAAATCTCGGATGGGCTCCTGCCATTGAATTCGAGGCTGCTTCATTG
AGTGTCCACAGCCCTACCTTCACCACTGGCCCAACCGAGCTAGAAGAAGA
CGGCGACGCCAAGCTCCGCGGCAATTTCCACGCCCGTATGAGGGAAATGT
TGTCGACTTACACCTTCACTCCTTCTCGAATAATCGACGTGGGTTGCGCC
GCTGGGATGAGCACGCTGCGTCTGCAAGCCTCCTTTCCTGAGGCCGAGGT
AATGGGCATCGACCTGTCGCCCTACATGCTGGCCGTTGCAAAATACAACC
TCAACTCCCGGCCCGAGCTCGCGCAGCTCAAAAGCGAAAGGCGTGTAGAT
TACATGCATGCCGCAGGGGAGGACACGGGACTGCCTGATGCGTCGGTAGA
CTTGGTCTCAATTTGCCTGGTTAATCACGAGCTACCAAATGAGGCCGCAC
GTAAGGTCTTCCGAGAGGCTTACCGCTTGCTTCGCCCCGGCGGGGCCTTG
GCGTTTATGGATATGGATCCGACGGCAATGGCTTTCCAGAGAATTGTGAA
TAATCCGATGCTATTCGCCCTGTTCAAGAGCACGGAACCCTGGTTGAAGG
AGTATGTAGTGCTGGACTTGCCGAGCGAGCTGCAGGCAGCAGGGTTTAGC
CGCATGGATGTTAAGGGGAATTCACCGCGGCATCGAACGGTGGTGGCGTT
TAAGTAA
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protein sequence of NO05G01350.1

>NO05G01350.1-protein ID=NO05G01350.1-protein|Name=NO05G01350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=369bp
MLRLPRPILLIVLLFSTSTHAFRHTTLKMMSSSTDMPLSASTRTPTVLRQ
PLSYRVADKVVGTLFGIDPIFNLLAKKARESIMVRGEKIGVSWVERVDGL
KQHMDELEKQYEEINRPLVVTPEYYKKPFHAYKEGNLGWAPAIEFEAASL
SVHSPTFTTGPTELEEDGDAKLRGNFHARMREMLSTYTFTPSRIIDVGCA
AGMSTLRLQASFPEAEVMGIDLSPYMLAVAKYNLNSRPELAQLKSERRVD
YMHAAGEDTGLPDASVDLVSICLVNHELPNEAARKVFREAYRLLRPGGAL
AFMDMDPTAMAFQRIVNNPMLFALFKSTEPWLKEYVVLDLPSELQAAGFS
RMDVKGNSPRHRTVVAFK*
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mRNA from alignment at chr5:387462..388568+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G01350.1 ID=NO05G01350.1|Name=NO05G01350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1107bp|location=Sequence derived from alignment at chr5:387462..388568+ (Nannochloropsis oceanica)
ATGCTGCGCCTTCCAAGACCCATCCTCTTGATCGTCCTTCTCTTTTCCAC
CTCGACCCATGCATTCCGTCACACAACCCTCAAGATGATGTCCTCCAGCA
CGGACATGCCCTTATCGGCCAGCACCAGGACGCCAACCGTACTCCGACAA
CCTCTGTCGTATCGCGTCGCGGACAAAGTCGTCGGCACGCTCTTTGGAAT
CGACCCCATTTTCAACCTGTTGGCCAAGAAGGCCCGGGAATCGATCATGG
TCCGGGGGGAGAAGATTGGTGTGTCGTGGGTGGAGAGGGTGGACGGCCTA
AAGCAACACATGGACGAGCTCGAGAAGCAGTACGAGGAAATCAACCGGCC
CCTCGTTGTGACCCCCGAATACTACAAGAAGCCTTTCCATGCATATAAGG
AGGGAAATCTCGGATGGGCTCCTGCCATTGAATTCGAGGCTGCTTCATTG
AGTGTCCACAGCCCTACCTTCACCACTGGCCCAACCGAGCTAGAAGAAGA
CGGCGACGCCAAGCTCCGCGGCAATTTCCACGCCCGTATGAGGGAAATGT
TGTCGACTTACACCTTCACTCCTTCTCGAATAATCGACGTGGGTTGCGCC
GCTGGGATGAGCACGCTGCGTCTGCAAGCCTCCTTTCCTGAGGCCGAGGT
AATGGGCATCGACCTGTCGCCCTACATGCTGGCCGTTGCAAAATACAACC
TCAACTCCCGGCCCGAGCTCGCGCAGCTCAAAAGCGAAAGGCGTGTAGAT
TACATGCATGCCGCAGGGGAGGACACGGGACTGCCTGATGCGTCGGTAGA
CTTGGTCTCAATTTGCCTGGTTAATCACGAGCTACCAAATGAGGCCGCAC
GTAAGGTCTTCCGAGAGGCTTACCGCTTGCTTCGCCCCGGCGGGGCCTTG
GCGTTTATGGATATGGATCCGACGGCAATGGCTTTCCAGAGAATTGTGAA
TAATCCGATGCTATTCGCCCTGTTCAAGAGCACGGAACCCTGGTTGAAGG
AGTATGTAGTGCTGGACTTGCCGAGCGAGCTGCAGGCAGCAGGGTTTAGC
CGCATGGATGTTAAGGGGAATTCACCGCGGCATCGAACGGTGGTGGCGTT
TAAGTAA
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Coding sequence (CDS) from alignment at chr5:387462..388568+

>NO05G01350.1 ID=NO05G01350.1|Name=NO05G01350.1|organism=Nannochloropsis oceanica|type=CDS|length=1107bp|location=Sequence derived from alignment at chr5:387462..388568+ (Nannochloropsis oceanica)
ATGCTGCGCCTTCCAAGACCCATCCTCTTGATCGTCCTTCTCTTTTCCAC
CTCGACCCATGCATTCCGTCACACAACCCTCAAGATGATGTCCTCCAGCA
CGGACATGCCCTTATCGGCCAGCACCAGGACGCCAACCGTACTCCGACAA
CCTCTGTCGTATCGCGTCGCGGACAAAGTCGTCGGCACGCTCTTTGGAAT
CGACCCCATTTTCAACCTGTTGGCCAAGAAGGCCCGGGAATCGATCATGG
TCCGGGGGGAGAAGATTGGTGTGTCGTGGGTGGAGAGGGTGGACGGCCTA
AAGCAACACATGGACGAGCTCGAGAAGCAGTACGAGGAAATCAACCGGCC
CCTCGTTGTGACCCCCGAATACTACAAGAAGCCTTTCCATGCATATAAGG
AGGGAAATCTCGGATGGGCTCCTGCCATTGAATTCGAGGCTGCTTCATTG
AGTGTCCACAGCCCTACCTTCACCACTGGCCCAACCGAGCTAGAAGAAGA
CGGCGACGCCAAGCTCCGCGGCAATTTCCACGCCCGTATGAGGGAAATGT
TGTCGACTTACACCTTCACTCCTTCTCGAATAATCGACGTGGGTTGCGCC
GCTGGGATGAGCACGCTGCGTCTGCAAGCCTCCTTTCCTGAGGCCGAGGT
AATGGGCATCGACCTGTCGCCCTACATGCTGGCCGTTGCAAAATACAACC
TCAACTCCCGGCCCGAGCTCGCGCAGCTCAAAAGCGAAAGGCGTGTAGAT
TACATGCATGCCGCAGGGGAGGACACGGGACTGCCTGATGCGTCGGTAGA
CTTGGTCTCAATTTGCCTGGTTAATCACGAGCTACCAAATGAGGCCGCAC
GTAAGGTCTTCCGAGAGGCTTACCGCTTGCTTCGCCCCGGCGGGGCCTTG
GCGTTTATGGATATGGATCCGACGGCAATGGCTTTCCAGAGAATTGTGAA
TAATCCGATGCTATTCGCCCTGTTCAAGAGCACGGAACCCTGGTTGAAGG
AGTATGTAGTGCTGGACTTGCCGAGCGAGCTGCAGGCAGCAGGGTTTAGC
CGCATGGATGTTAAGGGGAATTCACCGCGGCATCGAACGGTGGTGGCGTT
TAAGTAA
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Synonyms
Publications