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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr5 | genome | chr5:358718..361293 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G01260.1 vs.
Match: EWM28191.1 (gtp cyclohydrolase i [Nannochloropsis gaditana]) HSP 1 Score: 389.8 bits (1000), Expect = 1.000e-104 Identity = 232/343 (67.64%), Postives = 261/343 (76.09%), Query Frame = 0
Query: 66 SVVNGNGITY-SCNGALSSRSKNISYDKLPPRSAAASAE-AAAAAAAAAAGAAAVARL------SPSIIKNSTNDGMMNGGGHYNHRHSGVCCHGPEEEDEDEDEVHSHQPNSSSGSSGTIPRGAEIRSTASDQRKGEKKEEDAFGQGPEGERLRRMSAAVRTLLECVGEDPDREGLRSTPMRMAKALLYCTKGYEQTVQGVVGGAVFEEDHSEMVVVKDINVFSMCEHHMVPFMGKVHIGYIPRSKVLGLSKLARIAEMYARRLQIQERLTKQIAQAINEAIQPLGVAVVIEATHMCMVMRGVEKPGSVTITSSVTGAFKSNAATRNEFFSLIKSGSSGFGR 401
+V +GNGI + N + S + +N+ P AAAAAAAA AAAVARL S S++ N ++ G ++RH+G+CC G DEDEDE S S +G++ G E + TA + + ++ G E ERLRRMSAAVRTLLECVGEDPDREGLR+TPMRMAKALLYCTKGY+QTV GVVGGAVFEEDHSEMVVVKDINVFSMCEHHMVPF+GKVHIGYIPRSKVLGLSKLARIAEMYARRLQIQERLTKQIAQAINEAIQPLGVAVVIEATHMCMVMRGVEKPGS TITSSVTGAFKSNAATR+EFFSLIKSG+ G+GR
Sbjct: 8 TVSHGNGILKKTSNNSTSRKDENVPCHATPATCGNGRFPFQTAAAAAAAAAAAAVARLPLSEAGSDSLLLNKSSGETARGQQQEHYRHNGICCRG---HDEDEDEEESVAEGGSGQRNGSVVHG-ENKLTAHGKHAQRAEGDEDSGGSSEEERLRRMSAAVRTLLECVGEDPDREGLRATPMRMAKALLYCTKGYDQTVAGVVGGAVFEEDHSEMVVVKDINVFSMCEHHMVPFLGKVHIGYIPRSKVLGLSKLARIAEMYARRLQIQERLTKQIAQAINEAIQPLGVAVVIEATHMCMVMRGVEKPGSATITSSVTGAFKSNAATRSEFFSLIKSGNGGYGR 346
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G01260.1 ID=NO05G01260.1|Name=NO05G01260.1|organism=Nannochloropsis oceanica|type=mRNA|length=2006bp ACAGGCCCTTACGCGTTGTACGAAGCACTTCTAGGTTTTAAGGACTGCTT TCTAGTCATCGACGTCAGCTTAATTGCGTCGCTCCCCCACCGCATCAACA GATACTTTCGTTCCCACCACTCAATCGACGCCCCCCGGCCACTTGCACGC CTGGATACCATGGCCTTGCCAATCTACGATGCGGATCAGCCAATGCCCAT GACGGAATCTTCCTCTTCCTCTTCCTCCTCCTCGACCGGCTCTGAATCTC TTGATGGCCCCTACGACGACGACGTGGTCGATATGCCACTCGCCCAAAAA TGTGCTCTCGGTCATCCCATTGCCACCACGAACGCCAACGGCATTACCAG CAGCAGCGTCGTGAATGGCAATGGCATCACATATTCCTGTAATGGAGCTC TAAGCAGCAGAAGCAAGAACATCAGTTACGACAAGCTTCCCCCCCGCAGC GCAGCAGCATCGGCAGAAGCAGCAGCAGCCGCCGCCGCCGCAGCAGCAGG AGCTGCGGCTGTCGCGCGCTTATCACCATCAATTATAAAGAACAGTACCA ACGATGGGATGATGAATGGCGGTGGACATTATAATCATAGACATAGCGGC GTTTGTTGCCATGGACCCGAGGAGGAGGATGAGGACGAAGACGAGGTGCA CTCACACCAACCAAATAGTAGCAGCGGCAGCAGCGGTACCATTCCACGGG GAGCAGAGATCCGATCCACAGCGTCTGATCAACGAAAAGGAGAGAAGAAG GAAGAGGACGCGTTTGGTCAAGGGCCGGAGGGGGAGAGATTGAGGCGGAT GTCAGCTGCTGTAAGGACGTTGTTGGAGTGTGTCGGGGAAGACCCAGACA GGGAGGGATTGCGGTCGACACCGATGAGGATGGCGAAGGCATTGTTATAT TGTACGAAGGGATATGAGCAGACGGTTCAGGGAGTGGTGGGAGGAGCAGT GTTCGAAGAAGACCACTCGGAGATGGTGGTTGTGAAGGACATTAACGTCT TCTCTATGTGCGAGCACCACATGGTGCCTTTCATGGGCAAAGTCCACATA GGCTACATCCCTCGGTCAAAGGTGTTGGGCTTGTCAAAACTGGCAAGAAT TGCGGAAATGTACGCCAGGAGGCTTCAGATCCAGGAGAGATTGACCAAGC AGATTGCTCAGGCGATTAATGAGGCGATCCAGCCACTGGGGGTCGCGGTG GTCATTGAAGCCACGCACATGTGCATGGTCATGCGTGGCGTGGAGAAACC TGGCTCGGTCACAATCACTTCTTCTGTGACGGGTGCCTTCAAGAGCAACG CTGCTACGCGCAATGAGTTCTTCTCGCTGATAAAGTCAGGTAGCAGCGGG TTTGGCCGATAGGTGAGGGAGGGAGGGAAGGTAACGGGAATGTGCAGGAC GTGATTTAGCAGTGTATCACAGTGAATTTCTCTTCTTTGACATGCTTTTC ATTGAGGTTTGGAGAGTCACTATTTCTTCGCGAAGAAGAGAGATTGGAAC AGTGAGTCATCAGTAGTAGCACTTCCTCTTTTGAGTGGGCGTGTTTTTTG CGGGGCAATAGTAGAAGCAGCAGCAACAGCAGGAGGAGTAGTGACAACCG AGAGGGACGTGACAGAGTAAGAGTTCTTAATGAGTATGTAGTGGATGGAT GGGTGTGAGGGTGAGTCGAACGCAAGATGGCAGAGGGGAGGAGTGAAAGT CTCTAGCAACGTTGCCATGTCTGCACAACACCATAATCATGACGGGCAAG CGCGCATTAAAAAATCTTGTCGGATGTACACTGTGTCCCGAGAAGGAATG GGAAATAAAAGCGGATTCATGGGTGAAACAAACAAACAAACAGCGTTACA GCGCGAGGAGCCTTGCAGGAAAAAGGCGCAAGCGCAACAAAGGAAATCTG TGACACCCAAACGGAAAGAAGTCCGGTCACTAGGAAAAAATAAGGATGAC TGACGTGCCAAAATCAGATGAAAACGTGCCGTCATTGCTGCTATTGCTTC GTGTTG back to topprotein sequence of NO05G01260.1 >NO05G01260.1-protein ID=NO05G01260.1-protein|Name=NO05G01260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=401bp MALPIYDADQPMPMTESSSSSSSSSTGSESLDGPYDDDVVDMPLAQKCAL GHPIATTNANGITSSSVVNGNGITYSCNGALSSRSKNISYDKLPPRSAAA SAEAAAAAAAAAAGAAAVARLSPSIIKNSTNDGMMNGGGHYNHRHSGVCC HGPEEEDEDEDEVHSHQPNSSSGSSGTIPRGAEIRSTASDQRKGEKKEED AFGQGPEGERLRRMSAAVRTLLECVGEDPDREGLRSTPMRMAKALLYCTK GYEQTVQGVVGGAVFEEDHSEMVVVKDINVFSMCEHHMVPFMGKVHIGYI PRSKVLGLSKLARIAEMYARRLQIQERLTKQIAQAINEAIQPLGVAVVIE ATHMCMVMRGVEKPGSVTITSSVTGAFKSNAATRNEFFSLIKSGSSGFGR * back to topmRNA from alignment at chr5:358718..361293- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G01260.1 ID=NO05G01260.1|Name=NO05G01260.1|organism=Nannochloropsis oceanica|type=mRNA|length=2576bp|location=Sequence derived from alignment at chr5:358718..361293- (Nannochloropsis oceanica) ACAGGCCCTTACGCGTTGTACGAAGCACTTCTAGGTTTTAAGGACTGCTT
TCTAGTCATCGACGTCAGCTTAATTGCGTCGCTCCCCCACCGCATCAACA
GATACTTTCGTTCCCACCACTCAATCGACGCCCCCCGGCCACTTGCACGC
CTGGATACCATGGCCTTGCCAATCTACGATGCGGATCAGCCAATGCCCAT
GACGGTACGTTTATTTCTAGGTTTCTAGCAAGCGTGTGGTGCGGATAAGC
AGATGTCGAAAGTGCAGGGCAATGAGCTTGCGGCGATCTCATTGGTCCTC
ATTTATGCCCCTGGGCGATGCGCAACACCGTGTCTATCTCATCCAAGCCT
TGTCATGGCATCACCACATTCACTGCTTGTATGAGACAATTGGTATGTGG
TCCGTGTTTTGGTTCGTCTTAAATCGGTCAACAAGAGAGATCCAGTCCAA
CCCTAGGACACAAACCCCCAGCACGTTTGATCCGCCATTTTTACTCATCT
ACGCCCCTATCACATGTATACACTCCCAGGAATCTTCCTCTTCCTCTTCC
TCCTCCTCGACCGGCTCTGAATCTCTTGATGGCCCCTACGACGACGACGT
GGTCGATATGCCACTCGCCCAAAAATGTGCTCTCGGTCATCCCATTGCCA
CCACGAACGCCAACGGCATTACCAGCAGCAGCGTCGTGAATGGCAATGGC
ATCACATATTCCTGTAATGGAGCTCTAAGCAGCAGAAGCAAGAACATCAG
TTACGACAAGCTTCCCCCCCGCAGCGCAGCAGCATCGGCAGAAGCAGCAG
CAGCCGCCGCCGCCGCAGCAGCAGGAGCTGCGGCTGTCGCGCGCTTATCA
CCATCAATTATAAAGAACAGTACCAACGATGGGATGATGAATGGCGGTGG
ACATTATAATCATAGACATAGCGGCGTTTGTTGCCATGGACCCGAGGAGG
AGGATGAGGACGAAGACGAGGTGCACTCACACCAACCAAATAGTAGCAGC
GGCAGCAGCGGTACCATTCCACGGGGAGCAGAGATCCGATCCACAGCGTC
TGATCAACGAAAAGGAGAGAAGAAGGAAGAGGACGCGTTTGGTCAAGGGC
CGGAGGGGGAGAGATTGAGGCGGATGTCAGCTGCTGTAAGGACGTTGTTG
GAGTGTGTCGGGGAAGACCCAGACAGGGAGGGATTGCGGTCGACACCGAT
GAGGATGGCGAAGGCATTGTTATATTGTACGAAGGGATATGAGCAGACGG
TTCAGGGAGTGGTGGGAGGAGCAGTGTTCGAAGAAGACCACTCGGAGATG
GTGGTTGTGAAGGACATTAACGTCTTCTCTATGTGCGAGCACCACATGGT
GCCTTTCATGGGCAAAGTCCACATAGGCTACATCCCTCGGTCAAAGGTGT
TGGGCTTGTCAAAACTGGCAAGAATTGCGGAAATGTACGCCAGGAGGCTT
CAGATCCAGGAGAGATTGACCAAGCAGATTGCTCAGGCGATTAATGAGGC
GATCCAGCCACTGGGGGTCGCGGTGGTCATTGAAGCCACGTAAGTGATAC
GAGCGAGGGGATGCGAAGGAAAGGGTGTAGCATTTTCGTATCCGAGCGTT
GGTTTCCAGTGTAAATGAAGGCCATCCTTTATCCTTGATTTGTCTCTTAC
TTGACCGTCTCTTCCCCCCCCTCCCCCCCCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTTCCACCTCATTCCCTCTCTCCAGGCACATGTGCATGGTC
ATGCGTGGCGTGGAGAAACCTGGCTCGGTCACAATCACTTCTTCTGTGAC
GGGTGCCTTCAAGAGCAACGCTGCTACGCGCAATGAGTTCTTCTCGCTGA
TAAAGTCAGGTAGCAGCGGGTTTGGCCGATAGGTGAGGGAGGGAGGGAAG
GTAACGGGAATGTGCAGGACGTGATTTAGCAGTGTATCACAGTGAATTTC
TCTTCTTTGACATGCTTTTCATTGAGGTTTGGAGAGTCACTATTTCTTCG
CGAAGAAGAGAGATTGGAACAGTGAGTCATCAGTAGTAGCACTTCCTCTT
TTGAGTGGGCGTGTTTTTTGCGGGGCAATAGTAGAAGCAGCAGCAACAGC
AGGAGGAGTAGTGACAACCGAGAGGGACGTGACAGAGTAAGAGTTCTTAA
TGAGTATGTAGTGGATGGATGGGTGTGAGGGTGAGTCGAACGCAAGATGG
CAGAGGGGAGGAGTGAAAGTCTCTAGCAACGTTGCCATGTCTGCACAACA
CCATAATCATGACGGGCAAGCGCGCATTAAAAAATCTTGTCGGATGTACA
CTGTGTCCCGAGAAGGAATGGGAAATAAAAGCGGATTCATGGGTGAAACA
AACAAACAAACAGCGTTACAGCGCGAGGAGCCTTGCAGGAAAAAGGCGCA
AGCGCAACAAAGGAAATCTGTGACACCCAAACGGAAAGAAGTCCGGTCAC
TAGGAAAAAATAAGGATGACTGACGTGCCAAAATCAGATGAAAACGTGCC
GTCATTGCTGCTATTGCTTCGTGTTG back to topCoding sequence (CDS) from alignment at chr5:358718..361293- >NO05G01260.1 ID=NO05G01260.1|Name=NO05G01260.1|organism=Nannochloropsis oceanica|type=CDS|length=1203bp|location=Sequence derived from alignment at chr5:358718..361293- (Nannochloropsis oceanica) ATGGCCTTGCCAATCTACGATGCGGATCAGCCAATGCCCATGACGGAATC TTCCTCTTCCTCTTCCTCCTCCTCGACCGGCTCTGAATCTCTTGATGGCC CCTACGACGACGACGTGGTCGATATGCCACTCGCCCAAAAATGTGCTCTC GGTCATCCCATTGCCACCACGAACGCCAACGGCATTACCAGCAGCAGCGT CGTGAATGGCAATGGCATCACATATTCCTGTAATGGAGCTCTAAGCAGCA GAAGCAAGAACATCAGTTACGACAAGCTTCCCCCCCGCAGCGCAGCAGCA TCGGCAGAAGCAGCAGCAGCCGCCGCCGCCGCAGCAGCAGGAGCTGCGGC TGTCGCGCGCTTATCACCATCAATTATAAAGAACAGTACCAACGATGGGA TGATGAATGGCGGTGGACATTATAATCATAGACATAGCGGCGTTTGTTGC CATGGACCCGAGGAGGAGGATGAGGACGAAGACGAGGTGCACTCACACCA ACCAAATAGTAGCAGCGGCAGCAGCGGTACCATTCCACGGGGAGCAGAGA TCCGATCCACAGCGTCTGATCAACGAAAAGGAGAGAAGAAGGAAGAGGAC GCGTTTGGTCAAGGGCCGGAGGGGGAGAGATTGAGGCGGATGTCAGCTGC TGTAAGGACGTTGTTGGAGTGTGTCGGGGAAGACCCAGACAGGGAGGGAT TGCGGTCGACACCGATGAGGATGGCGAAGGCATTGTTATATTGTACGAAG GGATATGAGCAGACGGTTCAGGGAGTGGTGGGAGGAGCAGTGTTCGAAGA AGACCACTCGGAGATGGTGGTTGTGAAGGACATTAACGTCTTCTCTATGT GCGAGCACCACATGGTGCCTTTCATGGGCAAAGTCCACATAGGCTACATC CCTCGGTCAAAGGTGTTGGGCTTGTCAAAACTGGCAAGAATTGCGGAAAT GTACGCCAGGAGGCTTCAGATCCAGGAGAGATTGACCAAGCAGATTGCTC AGGCGATTAATGAGGCGATCCAGCCACTGGGGGTCGCGGTGGTCATTGAA GCCACGCACATGTGCATGGTCATGCGTGGCGTGGAGAAACCTGGCTCGGT CACAATCACTTCTTCTGTGACGGGTGCCTTCAAGAGCAACGCTGCTACGC GCAATGAGTTCTTCTCGCTGATAAAGTCAGGTAGCAGCGGGTTTGGCCGA TAG back to top
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