NO05G01230.1, NO05G01230.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G01230.1
Unique NameNO05G01230.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length798
Alignment locationchr5:353065..353862 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:353065..353862 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G01230.1 vs.
Match: EWM28270.1 (purine nucleoside phosphorylase inosine and guanosine-specific [Nannochloropsis gaditana])

HSP 1 Score: 431.8 bits (1109), Expect = 1.500e-117
Identity = 203/257 (78.99%), Postives = 224/257 (87.16%), Query Frame = 0 
Query:    1 MSTDKLFHPIRERNYYLEDARKVADFLRSRSSHPAPEIAIVLGSRLQDFERAIEAPEKVYYEEVQDFFPSFPTCSATMGTEGAFIFGLVDGVSVIVMQGRFHTYEGHSTQATAFPVRIMKELGVQTLILTNAARGLSPTLEIGDVMLVVDHYNTERSSETHPLAGINLEHWGPRFLRCDNLYDINLRRLTRRIAKEKRIALKQGGYIFVSGPSYETPMEEDGLRNLCEKRKGWGRALMHLKYWMGAMDRRGGINLGG 258
            M     F P+RE+ Y LEDARKVADFLRSRSSHPAPEIAIVLGSRL  FE+ IEAPEK+YY ++Q   PSFPTCS  +G EGAFIFG VDG+SV+VMQGRFH YEGHS+QATAFPVR++KELGVQTLILTNAARGLSPTLEIGDVMLVVDHYNTER SETHPLAGIN+EHWGPRFLRCDNLYD NLRR+TR+IAKEKRI LKQGGYIFVSGPSYETPMEEDGLRNLCEKR+GWGR LMH+++W+   D     + GG
Sbjct:    1 MDVQDNFRPVREKIYRLEDARKVADFLRSRSSHPAPEIAIVLGSRLHAFEQVIEAPEKIYYHDIQAVLPSFPTCSTAIGKEGAFIFGSVDGISVLVMQGRFHMYEGHSSQATAFPVRVIKELGVQTLILTNAARGLSPTLEIGDVMLVVDHYNTERGSETHPLAGINVEHWGPRFLRCDNLYDYNLRRMTRQIAKEKRITLKQGGYIFVSGPSYETPMEEDGLRNLCEKRRGWGRLLMHVRHWLSPRDSAARDHPGG 257
The following BLAST results are available for this feature:
BLAST of NO05G01230.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28270.11.500e-11778.99purine nucleoside phosphorylase inosine and guanos... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G01230NO05G01230Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G01230.1NO05G01230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G01230.1.cds1NO05G01230.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G01230.1 ID=NO05G01230.1|Name=NO05G01230.1|organism=Nannochloropsis oceanica|type=mRNA|length=798bp
ATGTCAACTGATAAGCTTTTCCACCCTATTAGGGAGCGGAACTACTACCT
CGAAGACGCCCGTAAAGTCGCTGATTTTTTGCGGTCGCGAAGCAGCCACC
CCGCTCCAGAGATTGCCATTGTTCTGGGCAGTCGTCTGCAAGATTTTGAA
CGAGCCATCGAAGCCCCTGAGAAAGTGTATTATGAAGAAGTCCAAGACTT
CTTCCCTTCCTTCCCGACATGCTCCGCGACGATGGGCACGGAAGGCGCCT
TCATTTTTGGATTGGTGGACGGGGTGAGCGTGATCGTGATGCAGGGCCGA
TTTCACACGTACGAAGGGCATTCCACCCAGGCCACGGCCTTTCCCGTGCG
CATCATGAAGGAGCTGGGTGTACAAACCTTAATTCTGACGAATGCTGCGC
GGGGTTTAAGTCCGACCTTGGAGATTGGGGATGTCATGTTAGTGGTCGAT
CATTACAACACGGAACGGAGCAGCGAGACGCACCCGCTGGCAGGGATTAA
CCTAGAGCATTGGGGGCCTCGTTTCCTACGATGTGATAACTTGTACGACA
TTAATTTACGCCGGCTTACCCGGCGAATTGCGAAAGAAAAACGGATCGCG
CTGAAGCAGGGTGGTTATATTTTTGTGTCGGGTCCGTCGTATGAGACGCC
AATGGAGGAGGATGGGTTGCGGAATTTGTGTGAAAAAAGGAAGGGGTGGG
GGAGGGCGTTAATGCACTTAAAATACTGGATGGGTGCGATGGATAGAAGG
GGGGGTATCAACCTGGGGGGGTGTTTGACATGCTGGATCGAATGTTGA
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protein sequence of NO05G01230.1

>NO05G01230.1-protein ID=NO05G01230.1-protein|Name=NO05G01230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=266bp
MSTDKLFHPIRERNYYLEDARKVADFLRSRSSHPAPEIAIVLGSRLQDFE
RAIEAPEKVYYEEVQDFFPSFPTCSATMGTEGAFIFGLVDGVSVIVMQGR
FHTYEGHSTQATAFPVRIMKELGVQTLILTNAARGLSPTLEIGDVMLVVD
HYNTERSSETHPLAGINLEHWGPRFLRCDNLYDINLRRLTRRIAKEKRIA
LKQGGYIFVSGPSYETPMEEDGLRNLCEKRKGWGRALMHLKYWMGAMDRR
GGINLGGCLTCWIEC*
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mRNA from alignment at chr5:353065..353862+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G01230.1 ID=NO05G01230.1|Name=NO05G01230.1|organism=Nannochloropsis oceanica|type=mRNA|length=798bp|location=Sequence derived from alignment at chr5:353065..353862+ (Nannochloropsis oceanica)
ATGTCAACTGATAAGCTTTTCCACCCTATTAGGGAGCGGAACTACTACCT
CGAAGACGCCCGTAAAGTCGCTGATTTTTTGCGGTCGCGAAGCAGCCACC
CCGCTCCAGAGATTGCCATTGTTCTGGGCAGTCGTCTGCAAGATTTTGAA
CGAGCCATCGAAGCCCCTGAGAAAGTGTATTATGAAGAAGTCCAAGACTT
CTTCCCTTCCTTCCCGACATGCTCCGCGACGATGGGCACGGAAGGCGCCT
TCATTTTTGGATTGGTGGACGGGGTGAGCGTGATCGTGATGCAGGGCCGA
TTTCACACGTACGAAGGGCATTCCACCCAGGCCACGGCCTTTCCCGTGCG
CATCATGAAGGAGCTGGGTGTACAAACCTTAATTCTGACGAATGCTGCGC
GGGGTTTAAGTCCGACCTTGGAGATTGGGGATGTCATGTTAGTGGTCGAT
CATTACAACACGGAACGGAGCAGCGAGACGCACCCGCTGGCAGGGATTAA
CCTAGAGCATTGGGGGCCTCGTTTCCTACGATGTGATAACTTGTACGACA
TTAATTTACGCCGGCTTACCCGGCGAATTGCGAAAGAAAAACGGATCGCG
CTGAAGCAGGGTGGTTATATTTTTGTGTCGGGTCCGTCGTATGAGACGCC
AATGGAGGAGGATGGGTTGCGGAATTTGTGTGAAAAAAGGAAGGGGTGGG
GGAGGGCGTTAATGCACTTAAAATACTGGATGGGTGCGATGGATAGAAGG
GGGGGTATCAACCTGGGGGGGTGTTTGACATGCTGGATCGAATGTTGA
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Coding sequence (CDS) from alignment at chr5:353065..353862+

>NO05G01230.1 ID=NO05G01230.1|Name=NO05G01230.1|organism=Nannochloropsis oceanica|type=CDS|length=798bp|location=Sequence derived from alignment at chr5:353065..353862+ (Nannochloropsis oceanica)
ATGTCAACTGATAAGCTTTTCCACCCTATTAGGGAGCGGAACTACTACCT
CGAAGACGCCCGTAAAGTCGCTGATTTTTTGCGGTCGCGAAGCAGCCACC
CCGCTCCAGAGATTGCCATTGTTCTGGGCAGTCGTCTGCAAGATTTTGAA
CGAGCCATCGAAGCCCCTGAGAAAGTGTATTATGAAGAAGTCCAAGACTT
CTTCCCTTCCTTCCCGACATGCTCCGCGACGATGGGCACGGAAGGCGCCT
TCATTTTTGGATTGGTGGACGGGGTGAGCGTGATCGTGATGCAGGGCCGA
TTTCACACGTACGAAGGGCATTCCACCCAGGCCACGGCCTTTCCCGTGCG
CATCATGAAGGAGCTGGGTGTACAAACCTTAATTCTGACGAATGCTGCGC
GGGGTTTAAGTCCGACCTTGGAGATTGGGGATGTCATGTTAGTGGTCGAT
CATTACAACACGGAACGGAGCAGCGAGACGCACCCGCTGGCAGGGATTAA
CCTAGAGCATTGGGGGCCTCGTTTCCTACGATGTGATAACTTGTACGACA
TTAATTTACGCCGGCTTACCCGGCGAATTGCGAAAGAAAAACGGATCGCG
CTGAAGCAGGGTGGTTATATTTTTGTGTCGGGTCCGTCGTATGAGACGCC
AATGGAGGAGGATGGGTTGCGGAATTTGTGTGAAAAAAGGAAGGGGTGGG
GGAGGGCGTTAATGCACTTAAAATACTGGATGGGTGCGATGGATAGAAGG
GGGGGTATCAACCTGGGGGGGTGTTTGACATGCTGGATCGAATGTTGA
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Synonyms
Publications