NO05G01210.1, NO05G01210.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G01210.1
Unique NameNO05G01210.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1204
Alignment locationchr5:350943..352472 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:350943..352472 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO05G01210.1 vs.
Match: EWM28150.1 (26s proteasome non-atpase regulatory subunit rpn12a [Nannochloropsis gaditana])

HSP 1 Score: 434.9 bits (1117), Expect = 1.900e-118
Identity = 222/269 (82.53%), Postives = 246/269 (91.45%), Query Frame = 0
Query:    1 MALQQGITMAKKLQSAVDNDQLAEASAILGELKVLLTGFDSLPPMNQPSPHAPEERALGRQVLEQAVFLALKQQDKTAFQRQMAQLKPYYQDAAGLGLPESTLRMPILGLNLLFLLVENRLAEFHSELEHLTEAERASTYVSFPILVEQQLMVGSYHKVLESRTHTPHPGYAFFMSLLVDTVRDAVADCSETAYVQLSVAAAKDIMLLDSDAALAEYAATKHPDWKVGGDGFVHFGKDHGPKQSKAADVPSLRLIAETLSYATELERIV 270
            MAL+QG  +  KLQSAV++D L EA+++LGELKVLLT F+SLPPMNQPSPHA EE ALGRQVLEQAVFLA+KQ+DK AFQRQMAQLKPYYQD  GLGL +S LRMPILGLNLLFLLVENRLAEFHSELEHL+EAERA+ YVSFPILVEQQLMVGSYHKVLE+RT TPHPGYAFFMSLLVDTVRDAVADCSE AY +L + AAK+I+LL+SD ALAEYAA KHPDW+V GDGFV+FGKDHGPKQ+KA+DVPSLRLI+ETLSYATELERIV
Sbjct:    1 MALEQGEKLVIKLQSAVESDHLGEAASLLGELKVLLTNFESLPPMNQPSPHASEECALGRQVLEQAVFLAVKQRDKIAFQRQMAQLKPYYQDK-GLGLTDSALRMPILGLNLLFLLVENRLAEFHSELEHLSEAERANVYVSFPILVEQQLMVGSYHKVLEARTRTPHPGYAFFMSLLVDTVRDAVADCSEAAYERLGIGAAKEILLLESDTALAEYAAVKHPDWRVDGDGFVYFGKDHGPKQAKASDVPSLRLISETLSYATELERIV 268          
The following BLAST results are available for this feature:
BLAST of NO05G01210.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28150.11.900e-11882.5326s proteasome non-atpase regulatory subunit rpn12... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G01210NO05G01210Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G01210.1NO05G01210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G01210.1.cds1NO05G01210.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G01210.1.cds2NO05G01210.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G01210.1 ID=NO05G01210.1|Name=NO05G01210.1|organism=Nannochloropsis oceanica|type=mRNA|length=1204bp
GTCGTCGTTGGCGAGAGGCTGGCGAGAGCGTTGCGAAGCCGAATGCGTTC
TTATAGCCTTGTCGCCACCCTCATACCACGCAATGACAAACATAATCACG
TCTAGATTGTCAGGCATGTTCTTTGATCTGTGATCCTCCATACGCCTGCT
AGTTTCCTTTCTCACAAGTTATTCCTGCCCTCATTACCACATCTAGGCTA
GCCCAGAATCATAAGCATCGCCAAGTTTTCGCACACAACCATGGCGCTGC
AACAAGGCATCACGATGGCCAAGAAGCTCCAGTCTGCCGTTGACAACGAC
CAACTCGCGGAGGCCTCCGCGATCCTAGGGGAACTCAAGGTCCTGCTCAC
GGGCTTTGACTCCCTCCCACCCATGAACCAACCCTCCCCCCACGCACCAG
AAGAACGTGCCTTGGGTCGCCAAGTGCTTGAACAAGCCGTCTTCCTCGCC
CTGAAACAGCAAGACAAAACCGCCTTCCAACGCCAAATGGCGCAACTGAA
GCCTTATTATCAAGATGCTGCAGGACTAGGGCTGCCGGAGTCGACGCTGC
GCATGCCTATCCTAGGACTAAATTTATTGTTTTTGCTCGTCGAAAACCGC
CTGGCCGAGTTCCACTCTGAGCTCGAACATCTGACGGAAGCTGAACGTGC
GAGCACCTACGTCTCCTTCCCCATTTTGGTGGAGCAACAGCTGATGGTTG
GGTCATACCACAAGGTGCTGGAATCAAGGACTCACACCCCTCACCCCGGC
TATGCCTTTTTCATGTCCCTGCTCGTTGATACGGTACGGGACGCCGTAGC
GGACTGCTCTGAGACAGCATATGTACAATTGAGCGTGGCGGCGGCCAAGG
ATATCATGTTACTGGATTCAGATGCCGCGCTGGCGGAGTACGCGGCGACC
AAGCACCCGGATTGGAAGGTGGGAGGAGATGGGTTTGTCCATTTTGGGAA
GGACCATGGGCCGAAGCAGAGCAAGGCGGCGGATGTACCCTCGTTGCGCT
TGATTGCCGAGACCTTGTCGTATGCAACGGAATTGGAGAGGATCGTATAA
TACTTGGGAACAAGGGGACGTTTGGCTTTTGAAAGGAGTGCGGAGGTTGG
GAGAGCATGTGAAATGTGAAGTTACAGCACGGAGAAACGATGAAAAGGAA
CATAGGCAATGCGGACTCGCGGATAGTGGATGGAAAAAAACACATGGCAT
TGGC
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protein sequence of NO05G01210.1

>NO05G01210.1-protein ID=NO05G01210.1-protein|Name=NO05G01210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=270bp
MALQQGITMAKKLQSAVDNDQLAEASAILGELKVLLTGFDSLPPMNQPSP
HAPEERALGRQVLEQAVFLALKQQDKTAFQRQMAQLKPYYQDAAGLGLPE
STLRMPILGLNLLFLLVENRLAEFHSELEHLTEAERASTYVSFPILVEQQ
LMVGSYHKVLESRTHTPHPGYAFFMSLLVDTVRDAVADCSETAYVQLSVA
AAKDIMLLDSDAALAEYAATKHPDWKVGGDGFVHFGKDHGPKQSKAADVP
SLRLIAETLSYATELERIV*
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mRNA from alignment at chr5:350943..352472+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G01210.1 ID=NO05G01210.1|Name=NO05G01210.1|organism=Nannochloropsis oceanica|type=mRNA|length=1530bp|location=Sequence derived from alignment at chr5:350943..352472+ (Nannochloropsis oceanica)
GTCGTCGTTGGCGAGAGGCTGGCGAGAGCGTTGCGAAGCCGAATGCGTTC TTATAGCCTTGTCGCCACCCTCATACCACGCAATGACAAACATAATCACG TCTAGATTGTCAGGCATGTTCTTTGATCTGTGATCCTCCATACGCCTGCT AGTTTCCTTTCTCACAAGTTATTCCTGCCCTCATTACCACATCTAGGCTA GCCCAGAATCATAAGCATCGCCAAGTTTTCGCACACAACCATGGCGCTGC AACAAGGCATCACGGTACGCGTTACTAAAGGGTGGGTGTGGGAGGGGTGT TTGGATGCTGCTAGATGAGCGATTGTTGGGTTCGGGAATACAAGCTGCTC GCTTTCCCTCATTCCCCCCCTCCCTTCCTCGTCTTGGACCCGCGACGCCA TCTCGTGGTCGATACAGCTTTGCGAGGAATGATTGAGACGTACAAGATGA GATGCTGCACAAACTGGCCCTGGAGATTCTGAACGCTATTTGCAAAGCGT CAGTCTGGTCCCGCTTCCCTTTTCTCGTTTCTTCCCACTTAGCCCATTTC TCTCTCCTCTACGCATCGACACACTCTTCCCCCATCACAGATGGCCAAGA AGCTCCAGTCTGCCGTTGACAACGACCAACTCGCGGAGGCCTCCGCGATC CTAGGGGAACTCAAGGTCCTGCTCACGGGCTTTGACTCCCTCCCACCCAT GAACCAACCCTCCCCCCACGCACCAGAAGAACGTGCCTTGGGTCGCCAAG TGCTTGAACAAGCCGTCTTCCTCGCCCTGAAACAGCAAGACAAAACCGCC TTCCAACGCCAAATGGCGCAACTGAAGCCTTATTATCAAGATGCTGCAGG ACTAGGGCTGCCGGAGTCGACGCTGCGCATGCCTATCCTAGGACTAAATT TATTGTTTTTGCTCGTCGAAAACCGCCTGGCCGAGTTCCACTCTGAGCTC GAACATCTGACGGAAGCTGAACGTGCGAGCACCTACGTCTCCTTCCCCAT TTTGGTGGAGCAACAGCTGATGGTTGGGTCATACCACAAGGTGCTGGAAT CAAGGACTCACACCCCTCACCCCGGCTATGCCTTTTTCATGTCCCTGCTC GTTGATACGGTACGGGACGCCGTAGCGGACTGCTCTGAGACAGCATATGT ACAATTGAGCGTGGCGGCGGCCAAGGATATCATGTTACTGGATTCAGATG CCGCGCTGGCGGAGTACGCGGCGACCAAGCACCCGGATTGGAAGGTGGGA GGAGATGGGTTTGTCCATTTTGGGAAGGACCATGGGCCGAAGCAGAGCAA GGCGGCGGATGTACCCTCGTTGCGCTTGATTGCCGAGACCTTGTCGTATG CAACGGAATTGGAGAGGATCGTATAATACTTGGGAACAAGGGGACGTTTG GCTTTTGAAAGGAGTGCGGAGGTTGGGAGAGCATGTGAAATGTGAAGTTA CAGCACGGAGAAACGATGAAAAGGAACATAGGCAATGCGGACTCGCGGAT AGTGGATGGAAAAAAACACATGGCATTGGC
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Coding sequence (CDS) from alignment at chr5:350943..352472+

>NO05G01210.1 ID=NO05G01210.1|Name=NO05G01210.1|organism=Nannochloropsis oceanica|type=CDS|length=810bp|location=Sequence derived from alignment at chr5:350943..352472+ (Nannochloropsis oceanica)
ATGGCGCTGCAACAAGGCATCACGATGGCCAAGAAGCTCCAGTCTGCCGT
TGACAACGACCAACTCGCGGAGGCCTCCGCGATCCTAGGGGAACTCAAGG
TCCTGCTCACGGGCTTTGACTCCCTCCCACCCATGAACCAACCCTCCCCC
CACGCACCAGAAGAACGTGCCTTGGGTCGCCAAGTGCTTGAACAAGCCGT
CTTCCTCGCCCTGAAACAGCAAGACAAAACCGCCTTCCAACGCCAAATGG
CGCAACTGAAGCCTTATTATCAAGATGCTGCAGGACTAGGGCTGCCGGAG
TCGACGCTGCGCATGCCTATCCTAGGACTAAATTTATTGTTTTTGCTCGT
CGAAAACCGCCTGGCCGAGTTCCACTCTGAGCTCGAACATCTGACGGAAG
CTGAACGTGCGAGCACCTACGTCTCCTTCCCCATTTTGGTGGAGCAACAG
CTGATGGTTGGGTCATACCACAAGGTGCTGGAATCAAGGACTCACACCCC
TCACCCCGGCTATGCCTTTTTCATGTCCCTGCTCGTTGATACGGTACGGG
ACGCCGTAGCGGACTGCTCTGAGACAGCATATGTACAATTGAGCGTGGCG
GCGGCCAAGGATATCATGTTACTGGATTCAGATGCCGCGCTGGCGGAGTA
CGCGGCGACCAAGCACCCGGATTGGAAGGTGGGAGGAGATGGGTTTGTCC
ATTTTGGGAAGGACCATGGGCCGAAGCAGAGCAAGGCGGCGGATGTACCC
TCGTTGCGCTTGATTGCCGAGACCTTGTCGTATGCAACGGAATTGGAGAG
GATCGTATAA
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Synonyms
Publications