NO05G01210.1, NO05G01210.1 (mRNA) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of NO05G01210.1 vs.
Match: EWM28150.1 (26s proteasome non-atpase regulatory subunit rpn12a [Nannochloropsis gaditana]) HSP 1 Score: 434.9 bits (1117), Expect = 1.900e-118 Identity = 222/269 (82.53%), Postives = 246/269 (91.45%), Query Frame = 0 Query: 1 MALQQGITMAKKLQSAVDNDQLAEASAILGELKVLLTGFDSLPPMNQPSPHAPEERALGRQVLEQAVFLALKQQDKTAFQRQMAQLKPYYQDAAGLGLPESTLRMPILGLNLLFLLVENRLAEFHSELEHLTEAERASTYVSFPILVEQQLMVGSYHKVLESRTHTPHPGYAFFMSLLVDTVRDAVADCSETAYVQLSVAAAKDIMLLDSDAALAEYAATKHPDWKVGGDGFVHFGKDHGPKQSKAADVPSLRLIAETLSYATELERIV 270 MAL+QG + KLQSAV++D L EA+++LGELKVLLT F+SLPPMNQPSPHA EE ALGRQVLEQAVFLA+KQ+DK AFQRQMAQLKPYYQD GLGL +S LRMPILGLNLLFLLVENRLAEFHSELEHL+EAERA+ YVSFPILVEQQLMVGSYHKVLE+RT TPHPGYAFFMSLLVDTVRDAVADCSE AY +L + AAK+I+LL+SD ALAEYAA KHPDW+V GDGFV+FGKDHGPKQ+KA+DVPSLRLI+ETLSYATELERIV Sbjct: 1 MALEQGEKLVIKLQSAVESDHLGEAASLLGELKVLLTNFESLPPMNQPSPHASEECALGRQVLEQAVFLAVKQRDKIAFQRQMAQLKPYYQDK-GLGLTDSALRMPILGLNLLFLLVENRLAEFHSELEHLSEAERANVYVSFPILVEQQLMVGSYHKVLEARTRTPHPGYAFFMSLLVDTVRDAVADCSEAAYERLGIGAAKEILLLESDTALAEYAAVKHPDWRVDGDGFVYFGKDHGPKQAKASDVPSLRLISETLSYATELERIV 268 The following BLAST results are available for this feature:
BLAST of NO05G01210.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1) Total hits: 1
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G01210.1 ID=NO05G01210.1|Name=NO05G01210.1|organism=Nannochloropsis oceanica|type=mRNA|length=1204bpback to top protein sequence of NO05G01210.1 >NO05G01210.1-protein ID=NO05G01210.1-protein|Name=NO05G01210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=270bpback to top mRNA from alignment at chr5:350943..352472+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>NO05G01210.1 ID=NO05G01210.1|Name=NO05G01210.1|organism=Nannochloropsis oceanica|type=mRNA|length=1530bp|location=Sequence derived from alignment at chr5:350943..352472+ (Nannochloropsis oceanica)back to top Coding sequence (CDS) from alignment at chr5:350943..352472+ >NO05G01210.1 ID=NO05G01210.1|Name=NO05G01210.1|organism=Nannochloropsis oceanica|type=CDS|length=810bp|location=Sequence derived from alignment at chr5:350943..352472+ (Nannochloropsis oceanica)back to top Synonyms
Publications
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