NO05G01190.1, NO05G01190.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G01190.1
Unique NameNO05G01190.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length663
Alignment locationchr5:345537..346199 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:345537..346199 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO05G01190.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G01190NO05G01190Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G01190.1NO05G01190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G01190.1.cds1NO05G01190.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G01190.1 ID=NO05G01190.1|Name=NO05G01190.1|organism=Nannochloropsis oceanica|type=mRNA|length=663bp
ATGCTCACCGACGAGCAGCAGCAGGAGCAACGGCAACAACGTCGACCACC
CAAGCCCGTGATTGGACGCAAGCGTGTCCTTCTTGGAGCAAATTATCAAT
TGGCTGATTCTGTCTTGCCCAGCCCTCATTCGCACGACATTTCACACAAT
TCACGCCTTGCTCTCATTGCATCCCGCCACGTCCATATTCACCCCAATGG
CTATTTCAATGCCTCAGCCGGTACAGAACGTGTACTCTGCCGGTGGAAAC
CCCCACCAGTAGGAGCTGGGCTACCGTCAATGGATGAGATTCAGGCGTTG
CTCGCTCAATTTGACCATAAATATGAAGAGCAGTTACTGTGGGCGATATA
TGAGGGAGGATGGGAGTTGTCTTTGACGCGGACTCGATTTATTCGAATGC
TGAATTCGAATAAGCCTTTGTTGGACAATGACGAGATGGGCGATCCGATA
CCACAGTTGGAGCAGTTCACAGCCTGGGACGCTACCATTTTTGAGGAGGC
GATGCGTATGAATTGGAAGGATTTTTACAGGGCCTCTATCATGGTTCGGA
AGAGTACCAAGAGCTGCGTGGCTTTCTATTACAACACATGGAAACACGAT
GTGGCCTACAAACGCGTAAAGTCTGAGCGGGTGCCCTCGCCTACCAAAAT
GGGATATGTGTAA
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protein sequence of NO05G01190.1

>NO05G01190.1-protein ID=NO05G01190.1-protein|Name=NO05G01190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=221bp
MLTDEQQQEQRQQRRPPKPVIGRKRVLLGANYQLADSVLPSPHSHDISHN
SRLALIASRHVHIHPNGYFNASAGTERVLCRWKPPPVGAGLPSMDEIQAL
LAQFDHKYEEQLLWAIYEGGWELSLTRTRFIRMLNSNKPLLDNDEMGDPI
PQLEQFTAWDATIFEEAMRMNWKDFYRASIMVRKSTKSCVAFYYNTWKHD
VAYKRVKSERVPSPTKMGYV*
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mRNA from alignment at chr5:345537..346199+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G01190.1 ID=NO05G01190.1|Name=NO05G01190.1|organism=Nannochloropsis oceanica|type=mRNA|length=663bp|location=Sequence derived from alignment at chr5:345537..346199+ (Nannochloropsis oceanica)
ATGCTCACCGACGAGCAGCAGCAGGAGCAACGGCAACAACGTCGACCACC
CAAGCCCGTGATTGGACGCAAGCGTGTCCTTCTTGGAGCAAATTATCAAT
TGGCTGATTCTGTCTTGCCCAGCCCTCATTCGCACGACATTTCACACAAT
TCACGCCTTGCTCTCATTGCATCCCGCCACGTCCATATTCACCCCAATGG
CTATTTCAATGCCTCAGCCGGTACAGAACGTGTACTCTGCCGGTGGAAAC
CCCCACCAGTAGGAGCTGGGCTACCGTCAATGGATGAGATTCAGGCGTTG
CTCGCTCAATTTGACCATAAATATGAAGAGCAGTTACTGTGGGCGATATA
TGAGGGAGGATGGGAGTTGTCTTTGACGCGGACTCGATTTATTCGAATGC
TGAATTCGAATAAGCCTTTGTTGGACAATGACGAGATGGGCGATCCGATA
CCACAGTTGGAGCAGTTCACAGCCTGGGACGCTACCATTTTTGAGGAGGC
GATGCGTATGAATTGGAAGGATTTTTACAGGGCCTCTATCATGGTTCGGA
AGAGTACCAAGAGCTGCGTGGCTTTCTATTACAACACATGGAAACACGAT
GTGGCCTACAAACGCGTAAAGTCTGAGCGGGTGCCCTCGCCTACCAAAAT
GGGATATGTGTAA
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Coding sequence (CDS) from alignment at chr5:345537..346199+

>NO05G01190.1 ID=NO05G01190.1|Name=NO05G01190.1|organism=Nannochloropsis oceanica|type=CDS|length=663bp|location=Sequence derived from alignment at chr5:345537..346199+ (Nannochloropsis oceanica)
ATGCTCACCGACGAGCAGCAGCAGGAGCAACGGCAACAACGTCGACCACC
CAAGCCCGTGATTGGACGCAAGCGTGTCCTTCTTGGAGCAAATTATCAAT
TGGCTGATTCTGTCTTGCCCAGCCCTCATTCGCACGACATTTCACACAAT
TCACGCCTTGCTCTCATTGCATCCCGCCACGTCCATATTCACCCCAATGG
CTATTTCAATGCCTCAGCCGGTACAGAACGTGTACTCTGCCGGTGGAAAC
CCCCACCAGTAGGAGCTGGGCTACCGTCAATGGATGAGATTCAGGCGTTG
CTCGCTCAATTTGACCATAAATATGAAGAGCAGTTACTGTGGGCGATATA
TGAGGGAGGATGGGAGTTGTCTTTGACGCGGACTCGATTTATTCGAATGC
TGAATTCGAATAAGCCTTTGTTGGACAATGACGAGATGGGCGATCCGATA
CCACAGTTGGAGCAGTTCACAGCCTGGGACGCTACCATTTTTGAGGAGGC
GATGCGTATGAATTGGAAGGATTTTTACAGGGCCTCTATCATGGTTCGGA
AGAGTACCAAGAGCTGCGTGGCTTTCTATTACAACACATGGAAACACGAT
GTGGCCTACAAACGCGTAAAGTCTGAGCGGGTGCCCTCGCCTACCAAAAT
GGGATATGTGTAA
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Synonyms
Publications