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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr5 | genome | chr5:334123..337363 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G01140.1 vs.
Match: EWM28252.1 (lipin-like protein [Nannochloropsis gaditana]) HSP 1 Score: 524.2 bits (1349), Expect = 5.100e-145 Identity = 328/607 (54.04%), Postives = 385/607 (63.43%), Query Frame = 0
Query: 1 MNVARDVIFTQGDGGLLHSTAFVVNFKPVGTLYKWLVSRPALAPLHLGGSTHPPSPSPSLRQALSVPSTAATTTNMSAQKGSSNVDSPRSSASWA--GSRYGSDDGNCDDVFNEEEDRREGPANTLASFILSSIGFTGSPFPPPS--------------SAAAHGRRPSWRGGSGGGEGDGREIRSPSTG-PPSVDQQERHQQRRRQQQEEEEHHQQQQHHHHARREGVEVYVRGRLVSELEMVVDGNGACVFADTGTMQPSSAALQSLSQLGKERGEGV--GLLRDGANPVEFVYCSPYGDLSVKATFHLWGARDRVVVSDIDGTITKSDIRGYIHSVHLGSHHHTHRGIGRLFSHLEQAHHLRFVYLTSRPISLLDATRTYLANVEQDEGYGLPQGPVFTSMDSLTRVLYKELVEKTIRYMKAQVLNEISSTFHRAGRPEEDRVFLLGFGNKSADGQAYEMVGVDPDSIFIINPNSEVRMFASYKE-SSFSSFPRPFDWRRSLSPNAMSSEAAKRKRTSKKKGGREGEEEGIEDEEEEEGDVGPAQGVMAMSRGRYEGEGGKEGGKDEEGHTTTTFDSYSDERLLRLLERRLARDAEGKDEHENV 588
MNVARDV+ G+ G+LHSTAFVV+FKPV +LYKWLV RP L LH R+ S TA + ++ S V + ++ + S G DG+ D R GPANTLAS ILSSIG T P PP + S+ AHG S G ++++ PS+G P +R Q E+E H RREGVEVYVRG LV LEMVVD GACVFA+TGT PS AALQSL L + +GE GLL+ G NPV+FVYC+PYGD+SV+ATFHLWG+RDRVVVSDIDGTITKSDIRGYI SVHLG+H +TH+GIGRLFSHL AHHLRFVYLTSRPISLL+ATR YLANV Q+EG+ LP GPVFTSMDSLTRVLY+ELVEKTIRYMKAQVLN+I STF +AGRPE D+VFL GFGNKSADGQAYEM GVDP SIFIINP+SEVRMFASYKE SSFSS P + R ++ N + + ++ + + G EE E +M R + EG DE H TF SYSD RLLRLLE+RLA D EG+ +V
Sbjct: 1 MNVARDVVLAHGEDGILHSTAFVVSFKPVNSLYKWLVGRPVLESLHA-------------RRGRSSGETATNEEGIETREDSRGVGATGATHAQGMPSSSAGELDGDLD---------RRGPANTLASSILSSIGLTALPHPPTAAIERGGVARAAHETSSLAHGEAQSRVSGQNKSF---KQLKMPSSGLDPRAPAPDRPQ--------EKEAPLDGGFHKDGRREGVEVYVRGELVPGLEMVVDDQGACVFAETGTTHPSRAALQSLLTLRRRKGEREVEGLLKPGPNPVDFVYCNPYGDVSVRATFHLWGSRDRVVVSDIDGTITKSDIRGYIDSVHLGNHEYTHQGIGRLFSHLHHAHHLRFVYLTSRPISLLEATRKYLANVYQEEGFRLPHGPVFTSMDSLTRVLYRELVEKTIRYMKAQVLNDIRSTFQKAGRPEGDQVFLFGFGNKSADGQAYEMAGVDPQSIFIINPSSEVRMFASYKESSSFSSSPSSYPSREGIAANRTCEGSKQDPQSGTESAAYRHVDRGSSQEEHRENSDSDGGSTSSMQSIRMD-RNVSEGKGDEGSHHGATFASYSDARLLRLLEQRLA-DVEGEQSRNDV 572
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G01140.1 ID=NO05G01140.1|Name=NO05G01140.1|organism=Nannochloropsis oceanica|type=mRNA|length=2742bp CATGCTTGCCCGTGATGATCCTGTGTTGATATGTTGGGTTGGTCGAGCGT AGAGAGCATGAGAGTACGTCCGATAGAGGCCCGGCCGTGAAGTTGATCCC GGAGGTCGTAATCCGCATCCAAAGCTCCAGCCAAGATGCCCTCGATACCT CTAAGCAATCACACATAAGCAGTCTGATGAGATGGAGGCGGGTTTGGTTG GGTTGGAGAATTGGTTGTTGGGGTGAGACAGGAGCAAGTCTAATGTCCCG CCGTCACAATTTGCTTGAACTTCTTGAAGCACCCGGGACGTGACCTCGCT GCTTTCTTTTTAAGGCTCCGTACACACCACGACGCCTCATCCATCTTTTC GTCCCATACAGGAAGAGCAGCCATACTATCACGCTGTCAATTACAACCCG CCCAGTCTTTGTGCCGTTTTCATTTCACACTGCGAGGCAGTCGTATTTCT CGTTGCACCCTCAGCCTCCCCACGTCTGCGCCAGCTCCGTCCCTTCCTCT GCCTTGCGTTTTCTCAACTTTTCGTCCAGGTCGGGGGAGAAAGCTGAAGG CGGCAGAGGAGGAGTAGGAGCACCAGGTGGAGGCGGCTATCCCCCCATCG GTGGCAGTGGTCTCGTACGTCTGTGGACTGCGCGTCTCGCCGCCCGCCTC GCTGCCCGTCGCAAGACCAAAGCCAACACCTCGGCCTCGTATTTCTCCCC ACACCAGGTTGTGCGATTCGATCGCCTTCTCCAGCGTTTGAGAGACGCGG CACAGGTGGGATCAGCCCCTCCTTACACTCCCATCCACCCATCACCAACC CGTTTCCACCAACGTCTCCTCCAGCAGCAACACTGGCTCCACCGCCGTCG CCGCGCTTTCCTCCACCGTGTTTATGGACACCGACGCGTGCGTGCATTTC CACGAGTAATGAATGTCGCACGAGATGTCATTTTCACACAGGGAGACGGC GGGCTGCTACACAGCACGGCGTTTGTGGTCAATTTTAAGCCAGTGGGAAC ATTGTACAAATGGCTTGTCTCAAGACCAGCTTTAGCACCCCTGCATCTAG GAGGGTCCACACATCCTCCTTCTCCTTCTCCTTCCCTACGACAAGCCTTA TCCGTCCCATCAACAGCAGCGACGACGACGAATATGAGTGCCCAAAAAGG CAGCAGCAACGTCGACAGCCCTCGTAGCTCCGCCTCCTGGGCAGGCAGCC GCTATGGTAGTGACGACGGCAACTGCGACGACGTTTTCAATGAGGAGGAG GACAGAAGGGAAGGGCCTGCTAACACTCTAGCCTCTTTCATTCTCTCAAG CATCGGCTTCACCGGTAGCCCTTTCCCCCCTCCATCTTCAGCTGCAGCCC ATGGCCGACGCCCTTCATGGCGGGGAGGGAGCGGTGGAGGGGAGGGTGAT GGGAGGGAGATACGCTCTCCTTCTACCGGCCCTCCTTCCGTCGATCAGCA AGAGAGGCATCAACAGCGACGACGACAACAACAAGAAGAAGAAGAGCATC ACCAGCAGCAGCAGCACCACCACCATGCACGCCGGGAGGGGGTAGAGGTG TACGTGCGAGGACGACTAGTGTCCGAATTAGAAATGGTGGTGGATGGAAA TGGTGCGTGTGTCTTTGCTGACACAGGGACGATGCAACCTTCTTCCGCAG CGCTTCAGAGCTTGTCGCAGCTGGGGAAAGAAAGGGGGGAGGGAGTGGGG CTATTGAGAGATGGGGCGAACCCAGTGGAGTTTGTGTACTGCAGTCCGTA CGGAGACTTGAGCGTGAAGGCCACCTTCCACCTGTGGGGGGCGAGGGACC GCGTGGTGGTGAGCGATATTGATGGTACCATCACCAAAAGCGACATACGT GGGTACATCCACAGCGTCCATCTCGGCAGCCACCACCACACCCACCGAGG CATCGGCCGGCTGTTCTCTCACCTTGAGCAGGCCCACCACTTGCGTTTTG TGTATTTGACGTCACGACCTATATCCCTGCTGGACGCGACAAGGACGTAC CTGGCGAACGTCGAGCAAGATGAAGGGTACGGATTGCCTCAGGGGCCGGT TTTTACGTCCATGGATTCCCTGACGAGGGTTTTGTATAAAGAGCTTGTTG AGAAGACCATCAGGTACATGAAAGCCCAAGTCTTAAACGAAATTAGCAGC ACCTTCCACAGGGCAGGCCGACCGGAAGAAGATCGTGTTTTCCTCCTGGG ATTTGGGAACAAGAGTGCCGATGGACAGGCATATGAAATGGTGGGTGTTG ACCCTGACAGCATTTTCATCATCAATCCCAACAGCGAAGTTCGCATGTTC GCTTCCTACAAAGAGTCTTCCTTCTCGTCCTTCCCTCGTCCCTTTGACTG GCGGAGGTCGCTCTCTCCGAACGCCATGTCGTCGGAAGCGGCCAAAAGGA AGAGGACAAGTAAGAAGAAGGGAGGGAGGGAGGGAGAAGAGGAAGGGATC GAAGACGAGGAAGAGGAGGAGGGTGACGTGGGACCTGCGCAGGGTGTGAT GGCCATGTCGAGGGGTAGGTATGAGGGGGAGGGAGGGAAGGAGGGAGGGA AGGATGAAGAGGGGCATACCACCACTACATTTGACTCCTATTCGGACGAG CGTTTGCTGCGACTACTTGAGCGTCGGCTGGCGCGGGACGCAGAAGGGAA GGATGAGCATGAAAATGTGTGATAAGAGAGAGAAATGGCTGACCGACCAA AAACAAAGAAATGTAAATATAAGGTAGAAGAATTGCCAATCC back to topprotein sequence of NO05G01140.1 >NO05G01140.1-protein ID=NO05G01140.1-protein|Name=NO05G01140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=588bp MNVARDVIFTQGDGGLLHSTAFVVNFKPVGTLYKWLVSRPALAPLHLGGS THPPSPSPSLRQALSVPSTAATTTNMSAQKGSSNVDSPRSSASWAGSRYG SDDGNCDDVFNEEEDRREGPANTLASFILSSIGFTGSPFPPPSSAAAHGR RPSWRGGSGGGEGDGREIRSPSTGPPSVDQQERHQQRRRQQQEEEEHHQQ QQHHHHARREGVEVYVRGRLVSELEMVVDGNGACVFADTGTMQPSSAALQ SLSQLGKERGEGVGLLRDGANPVEFVYCSPYGDLSVKATFHLWGARDRVV VSDIDGTITKSDIRGYIHSVHLGSHHHTHRGIGRLFSHLEQAHHLRFVYL TSRPISLLDATRTYLANVEQDEGYGLPQGPVFTSMDSLTRVLYKELVEKT IRYMKAQVLNEISSTFHRAGRPEEDRVFLLGFGNKSADGQAYEMVGVDPD SIFIINPNSEVRMFASYKESSFSSFPRPFDWRRSLSPNAMSSEAAKRKRT SKKKGGREGEEEGIEDEEEEEGDVGPAQGVMAMSRGRYEGEGGKEGGKDE EGHTTTTFDSYSDERLLRLLERRLARDAEGKDEHENV* back to topmRNA from alignment at chr5:334123..337363- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G01140.1 ID=NO05G01140.1|Name=NO05G01140.1|organism=Nannochloropsis oceanica|type=mRNA|length=3241bp|location=Sequence derived from alignment at chr5:334123..337363- (Nannochloropsis oceanica) CATGCTTGCCCGTGATGATCCTGTGTTGATATGTTGGGTTGGTCGAGCGT
AGAGAGCATGAGAGTACGTCCGATAGAGGCCCGGCCGTGAAGTTGATCCC
GGAGGTCGTAATCCGCATCCAAAGCTCCAGCCAAGATGCCCTCGATACCT
CTAAGCAATCACACATAAGCAGTCTGATGAGATGGAGGCGGGTTTGGTTG
GGTTGGAGAATTGGTTGTTGGGGTGAGACAGGAGCAAGTCTAATGTCCCG
CCGTCACAATTTGCTTGAACTTCTTGAAGCACCCGGGACGTGACCTCGCT
GCTTTCTTTTTAAGGCTCCGTACACACCACGACGCCTCATCCATCTTTTC
GTCCCATACAGGAAGAGCAGCCATACTATCACGCTGTCAATTACAACCCG
CCCAGTCTTTGTGCCGTTTTCATTTCACACTGCGAGGCAGTCGTATTTCT
CGTTGCACCCTCAGCCTCCCCACGTCTGCGCCAGCTCCGTCCCTTCCTCT
GCCTTGCGTTTTCTCAACTTTTCGTCCAGGTCGGGGGAGAAAGCTGAAGG
CGGCAGAGGAGGAGTAGGAGCACCAGGTGGAGGCGGCTATCCCCCCATCG
GTGGCAGTGGTCTCGTACGTCTGTGGACTGCGCGTCTCGCCGCCCGCCTC
GCTGCCCGTCGCAAGACCAAAGCCAACACCTCGGCCTCGTATTTCTCCCC
ACACCAGGTTGTGCGATTCGATCGCCTTCTCCAGCGTTTGAGAGACGCGG
CACAGGTGGGATCAGCCCCTCCTTACACTCCCATCCACCCATCACCAACC
CGTTTCCACCAACGTCTCCTCCAGCAGCAACACTGGCTCCACCGCCGTCG
CCGCGCTTTCCTCCACCGTGTTTATGGACACCGACGCGTGCGTGCATTTC
CACGAGTAATGAATGTCGCACGAGATGTCATTTTCACACAGGGAGACGGC
GGGCTGCTACACAGCACGGCGTTTGTGGTCAATTTTAAGCCAGTGGGAAC
ATTGTACAAATGGCTTGTCTCAAGACCAGCTTTAGCACCCCTGCATCTAG
GAGGGTCCACACATCCTCCTTCTCCTTCTCCTTCCCTACGACAAGCCTTA
TCCGTCCCATCAACAGCAGCGACGACGACGAATATGAGTGCCCAAAAAGG
CAGCAGCAACGTCGACAGCCCTCGTAGCTCCGCCTCCTGGGCAGGCAGCC
GCTATGGTAGTGACGACGGCAACTGCGACGACGTTTTCAATGAGGAGGAG
GACAGAAGGGAAGGGCCTGCTAACACTCTAGCCTCTTTCATTCTCTCAAG
CATCGGCTTCACCGGTAGCCCTTTCCCCCCTCCATCTTCAGCTGCAGCCC
ATGGCCGACGCCCTTCATGGCGGGGAGGGAGCGGTGGAGGGGAGGGTGAT
GGGAGGGAGATACGCTCTCCTTCTACCGGCCCTCCTTCCGTCGATCAGCA
AGAGAGGCATCAACAGCGACGACGACAACAACAAGAAGAAGAAGAGCATC
ACCAGCAGCAGCAGCACCACCACCATGCACGCCGGGAGGGGGTAGAGGTG
TACGTGCGAGGACGACTAGTGTCCGAATTAGAAATGGTGGTGGATGGAAA
TGGTGCGTGTGTCTTTGCTGACACAGGGACGATGCAACCTTCTTCCGCAG
CGCTTCAGAGCTTGTCGCAGCTGGGGAAAGAAAGGGGGGAGGGAGTGGGG
CTATTGAGAGATGGGGCGAACCCAGTGGAGTTTGTGTACTGCAGTCCGTA
CGGAGACTTGAGCGTGAAGGCCACCTTCCACCTGTGGGGGGCGAGGGACC
GCGTGGTGGTGAGCGATATTGATGGTACGTGAATTTGTGTTTGTGTGTTG
GTGGGGGGGGGGGGGCTAAGGAAAATGGGAGATGGTGTTGATCTGGTGTG
TGTGCGTGAGCGTGTTGTGTGGAGATATGTACGTGGAGGCTCTGACTTGT
CGTTCGCGTGCTGCACTCGTATTGCTTCCACTTGCTCACGTTTCCCTCCC
TCCCTCCCTCCCTTCGCAGGTACCATCACCAAAAGCGACATACGTGGGTA
CATCCACAGCGTCCATCTCGGCAGCCACCACCACACCCACCGAGGCATCG
GCCGGCTGTTCTCTCACCTTGAGCAGGCCCACCACTTGCGTTTTGTGTAT
TTGACGTCACGACCTATATCCCTGCTGGACGCGACAAGGACGTACCTGGC
GAACGTCGAGCAAGATGAAGGGTACGGATTGCCTCAGGGGCCGGTTTTTA
CGTCCATGGATTCCCTGACGAGGGTTTTGTATAAAGTGGGTGCTATCGGA
GGGAGGGAGGGAGGAAGAGAGGGAGGGAGGGAGGATCTGCATTGTATATT
CACCCGTTTGTTGCATGCTCTTTTACCCTTGAAATAATACAACCCCCCCC
CCCCTTCGTCCCTCCTACCCTCCCTTATTCCCGCTCAACAGGAGCTTGTT
GAGAAGACCATCAGGTACATGAAAGCCCAAGTCTTAAACGAAATTAGCAG
CACCTTCCACAGGGCAGGCCGACCGGAAGAAGATCGTGTTTTCCTCCTGG
GATTTGGGAACAAGAGTGCCGATGGACAGGCATATGAAATGGTAAGTCAA
CCCTCCACCCCTCCCTCCTTCTCTCCCTTCGTCACTTGCTCGTTCGCTTG
CCTTGGTTTCTTCTTTGTGTCCATCAATCTTACCTTTCCGTTTCAATACT
TCCGTCCTTCTCCCCTCTCTCACTCGGGGCCTCCCTCAGGTGGGTGTTGA
CCCTGACAGCATTTTCATCATCAATCCCAACAGCGAAGTTCGCATGTTCG
CTTCCTACAAAGAGTCTTCCTTCTCGTCCTTCCCTCGTCCCTTTGACTGG
CGGAGGTCGCTCTCTCCGAACGCCATGTCGTCGGAAGCGGCCAAAAGGAA
GAGGACAAGTAAGAAGAAGGGAGGGAGGGAGGGAGAAGAGGAAGGGATCG
AAGACGAGGAAGAGGAGGAGGGTGACGTGGGACCTGCGCAGGGTGTGATG
GCCATGTCGAGGGGTAGGTATGAGGGGGAGGGAGGGAAGGAGGGAGGGAA
GGATGAAGAGGGGCATACCACCACTACATTTGACTCCTATTCGGACGAGC
GTTTGCTGCGACTACTTGAGCGTCGGCTGGCGCGGGACGCAGAAGGGAAG
GATGAGCATGAAAATGTGTGATAAGAGAGAGAAATGGCTGACCGACCAAA
AACAAAGAAATGTAAATATAAGGTAGAAGAATTGCCAATCC back to topCoding sequence (CDS) from alignment at chr5:334123..337363- >NO05G01140.1 ID=NO05G01140.1|Name=NO05G01140.1|organism=Nannochloropsis oceanica|type=CDS|length=1764bp|location=Sequence derived from alignment at chr5:334123..337363- (Nannochloropsis oceanica) ATGAATGTCGCACGAGATGTCATTTTCACACAGGGAGACGGCGGGCTGCT ACACAGCACGGCGTTTGTGGTCAATTTTAAGCCAGTGGGAACATTGTACA AATGGCTTGTCTCAAGACCAGCTTTAGCACCCCTGCATCTAGGAGGGTCC ACACATCCTCCTTCTCCTTCTCCTTCCCTACGACAAGCCTTATCCGTCCC ATCAACAGCAGCGACGACGACGAATATGAGTGCCCAAAAAGGCAGCAGCA ACGTCGACAGCCCTCGTAGCTCCGCCTCCTGGGCAGGCAGCCGCTATGGT AGTGACGACGGCAACTGCGACGACGTTTTCAATGAGGAGGAGGACAGAAG GGAAGGGCCTGCTAACACTCTAGCCTCTTTCATTCTCTCAAGCATCGGCT TCACCGGTAGCCCTTTCCCCCCTCCATCTTCAGCTGCAGCCCATGGCCGA CGCCCTTCATGGCGGGGAGGGAGCGGTGGAGGGGAGGGTGATGGGAGGGA GATACGCTCTCCTTCTACCGGCCCTCCTTCCGTCGATCAGCAAGAGAGGC ATCAACAGCGACGACGACAACAACAAGAAGAAGAAGAGCATCACCAGCAG CAGCAGCACCACCACCATGCACGCCGGGAGGGGGTAGAGGTGTACGTGCG AGGACGACTAGTGTCCGAATTAGAAATGGTGGTGGATGGAAATGGTGCGT GTGTCTTTGCTGACACAGGGACGATGCAACCTTCTTCCGCAGCGCTTCAG AGCTTGTCGCAGCTGGGGAAAGAAAGGGGGGAGGGAGTGGGGCTATTGAG AGATGGGGCGAACCCAGTGGAGTTTGTGTACTGCAGTCCGTACGGAGACT TGAGCGTGAAGGCCACCTTCCACCTGTGGGGGGCGAGGGACCGCGTGGTG GTGAGCGATATTGATGGTACCATCACCAAAAGCGACATACGTGGGTACAT CCACAGCGTCCATCTCGGCAGCCACCACCACACCCACCGAGGCATCGGCC GGCTGTTCTCTCACCTTGAGCAGGCCCACCACTTGCGTTTTGTGTATTTG ACGTCACGACCTATATCCCTGCTGGACGCGACAAGGACGTACCTGGCGAA CGTCGAGCAAGATGAAGGGTACGGATTGCCTCAGGGGCCGGTTTTTACGT CCATGGATTCCCTGACGAGGGTTTTGTATAAAGAGCTTGTTGAGAAGACC ATCAGGTACATGAAAGCCCAAGTCTTAAACGAAATTAGCAGCACCTTCCA CAGGGCAGGCCGACCGGAAGAAGATCGTGTTTTCCTCCTGGGATTTGGGA ACAAGAGTGCCGATGGACAGGCATATGAAATGGTGGGTGTTGACCCTGAC AGCATTTTCATCATCAATCCCAACAGCGAAGTTCGCATGTTCGCTTCCTA CAAAGAGTCTTCCTTCTCGTCCTTCCCTCGTCCCTTTGACTGGCGGAGGT CGCTCTCTCCGAACGCCATGTCGTCGGAAGCGGCCAAAAGGAAGAGGACA AGTAAGAAGAAGGGAGGGAGGGAGGGAGAAGAGGAAGGGATCGAAGACGA GGAAGAGGAGGAGGGTGACGTGGGACCTGCGCAGGGTGTGATGGCCATGT CGAGGGGTAGGTATGAGGGGGAGGGAGGGAAGGAGGGAGGGAAGGATGAA GAGGGGCATACCACCACTACATTTGACTCCTATTCGGACGAGCGTTTGCT GCGACTACTTGAGCGTCGGCTGGCGCGGGACGCAGAAGGGAAGGATGAGC ATGAAAATGTGTGA back to top
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