NO05G01090.1, NO05G01090.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G01090.1
Unique NameNO05G01090.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1332
Alignment locationchr5:323251..324582 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:323251..324582 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G01090.1 vs.
Match: EWM28250.1 (endoplasmic reticulum-golgi intermediate compartment protein 3 [Nannochloropsis gaditana])

HSP 1 Score: 715.7 bits (1846), Expect = 8.900e-203
Identity = 354/443 (79.91%), Postives = 394/443 (88.94%), Query Frame = 0 
Query:    1 MISPNISPKELTLYERLRRLDFHPKTKDDFKVRTAYGGATSVVALACMVCLFLTELKYSMNKEIVDHMYVNSSRDTRLLFNFNMTFPSVSCQLLSADAMDPLGNKQEGVESHVFKTRLDAAGNPLSAKTWHKLGDTFTDVDVLAKHEEDSKAQFVQGEEEMEQWVEVDEDEDGEEREVEDEDGQKVWRKMKKVIGKRRKCGNCYGAGEEGECCNTCYSVKEAYDRRGWAFMGLNVEQCQQENLKNPLGEEGADEGCNIHGSLLLTQESGNVHFAPGEQLRHSGALNVADLVMFTFLKFNISHEIHHMSLGEEFPGFKSPLSNQVRSVADGYGMYQYYLKVVPTVYKHLNKASTVSNQYAVSEHIRHINPGSNRGLPGVWFFYDTSPVHVEFEERRRGLLPFLTSVCAIVGGVFSVFGVVDGVVHNLIQRGVGGGMKKGGAPGS 444
            MISPNISPK+LTLYERLRRLD+HPKTKDDFKVRTAYGGATSVVALACM+ LF TELKYSM KEIVDHMYVNSSRDTRLLFNFN+TFPSVSC LLSADA+DPLGNKQEGVESHVFKTRLD+ GNP++AKTWHKLGDTFT+ D+L KHEEDS+AQ    EEE EQ  ++ E+ DG++     EDG+   R +     KRRKCG+CYGAGE G+CCNTC  VK+AYD +GWAF+GLNVEQC+QENL+   G +GA+EGCNIHGSLLLT +SGNVHFAPGEQLR SGALNVADLV FTFL+FN+SHEIHH+SLGEEFPGF+SPLSNQ RSVADGYGMYQYYLKVVPT+YKHL++  TVSNQYAVSEHIRHINPGSNRGLPGVWFFYDTSPVHVEF+ERR+GLLPFLTSVCAIVGGVFSVFGVVDGVVHNL++ G+  G K GGAPGS
Sbjct:    1 MISPNISPKDLTLYERLRRLDYHPKTKDDFKVRTAYGGATSVVALACMIFLFFTELKYSMEKEIVDHMYVNSSRDTRLLFNFNLTFPSVSCSLLSADALDPLGNKQEGVESHVFKTRLDSMGNPIAAKTWHKLGDTFTEEDLLLKHEEDSRAQL---EEEEEQEEKLGEEGDGQQ---VGEDGKPRGRNL-----KRRKCGDCYGAGEPGQCCNTCAEVKQAYDSKGWAFIGLNVEQCKQENLQVSFG-DGAEEGCNIHGSLLLTHDSGNVHFAPGEQLRQSGALNVADLVTFTFLQFNVSHEIHHLSLGEEFPGFRSPLSNQKRSVADGYGMYQYYLKVVPTIYKHLSQPPTVSNQYAVSEHIRHINPGSNRGLPGVWFFYDTSPVHVEFQERRKGLLPFLTSVCAIVGGVFSVFGVVDGVVHNLMKNGLPTG-KMGGAPGS 430
The following BLAST results are available for this feature:
BLAST of NO05G01090.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28250.18.900e-20379.91endoplasmic reticulum-golgi intermediate compartme... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G01090NO05G01090Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G01090.1NO05G01090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G01090.1.cds1NO05G01090.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G01090.1 ID=NO05G01090.1|Name=NO05G01090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1332bp
ATGATCTCGCCCAACATCTCACCCAAGGAATTGACGCTGTACGAGCGATT
GCGGCGACTAGACTTCCACCCCAAGACGAAGGATGATTTCAAGGTCCGCA
CGGCTTATGGCGGGGCGACGTCCGTCGTGGCCTTGGCCTGCATGGTCTGC
TTGTTTTTAACCGAGCTCAAGTACTCGATGAATAAGGAGATTGTCGACCA
CATGTATGTTAATTCCTCGCGGGACACCCGACTGCTATTCAATTTCAACA
TGACCTTTCCCTCGGTATCGTGTCAGTTGTTGAGCGCCGATGCGATGGAC
CCGTTGGGGAATAAACAGGAGGGGGTGGAGAGCCATGTGTTCAAGACGCG
ATTAGATGCGGCAGGCAATCCACTCTCGGCAAAAACGTGGCATAAGCTGG
GGGATACCTTTACGGATGTGGATGTGTTGGCGAAGCACGAGGAGGACAGT
AAAGCGCAGTTTGTGCAGGGGGAGGAAGAGATGGAGCAATGGGTGGAAGT
AGACGAGGACGAGGATGGAGAGGAGAGGGAGGTAGAAGATGAAGACGGGC
AAAAAGTGTGGCGGAAGATGAAAAAGGTGATTGGGAAGCGACGGAAGTGT
GGGAACTGCTACGGGGCCGGCGAGGAGGGAGAGTGCTGCAACACTTGTTA
CAGCGTCAAGGAGGCGTACGACCGAAGGGGCTGGGCGTTCATGGGCCTGA
ATGTCGAGCAATGCCAGCAAGAAAACCTGAAGAATCCTCTGGGAGAAGAA
GGGGCAGACGAAGGCTGCAACATCCATGGCTCGTTGCTGTTGACACAGGA
GAGCGGGAACGTCCACTTTGCCCCGGGCGAGCAGCTCCGGCATTCGGGCG
CCTTAAATGTGGCTGATCTGGTGATGTTCACGTTCCTTAAATTCAACATC
TCACACGAAATCCACCACATGTCGTTGGGGGAGGAATTCCCAGGTTTTAA
ATCGCCGCTGAGTAATCAGGTGCGGAGCGTGGCGGATGGGTATGGAATGT
ATCAGTATTACCTGAAGGTAGTGCCGACCGTGTATAAGCACTTGAACAAG
GCGTCCACAGTCTCGAATCAATACGCGGTCTCCGAGCACATTCGTCATAT
CAACCCTGGGAGTAATCGGGGGCTACCGGGCGTGTGGTTCTTTTATGACA
CGTCTCCGGTGCATGTTGAGTTTGAGGAGAGGAGGAGAGGACTGTTACCG
TTCTTGACGAGTGTGTGCGCGATTGTTGGGGGCGTATTCTCAGTCTTCGG
GGTAGTCGATGGCGTAGTGCATAACTTGATTCAAAGGGGTGTAGGAGGCG
GGATGAAGAAAGGGGGGGCGCCTGGGAGTTAG
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protein sequence of NO05G01090.1

>NO05G01090.1-protein ID=NO05G01090.1-protein|Name=NO05G01090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=444bp
MISPNISPKELTLYERLRRLDFHPKTKDDFKVRTAYGGATSVVALACMVC
LFLTELKYSMNKEIVDHMYVNSSRDTRLLFNFNMTFPSVSCQLLSADAMD
PLGNKQEGVESHVFKTRLDAAGNPLSAKTWHKLGDTFTDVDVLAKHEEDS
KAQFVQGEEEMEQWVEVDEDEDGEEREVEDEDGQKVWRKMKKVIGKRRKC
GNCYGAGEEGECCNTCYSVKEAYDRRGWAFMGLNVEQCQQENLKNPLGEE
GADEGCNIHGSLLLTQESGNVHFAPGEQLRHSGALNVADLVMFTFLKFNI
SHEIHHMSLGEEFPGFKSPLSNQVRSVADGYGMYQYYLKVVPTVYKHLNK
ASTVSNQYAVSEHIRHINPGSNRGLPGVWFFYDTSPVHVEFEERRRGLLP
FLTSVCAIVGGVFSVFGVVDGVVHNLIQRGVGGGMKKGGAPGS*
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mRNA from alignment at chr5:323251..324582-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G01090.1 ID=NO05G01090.1|Name=NO05G01090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1332bp|location=Sequence derived from alignment at chr5:323251..324582- (Nannochloropsis oceanica)
ATGATCTCGCCCAACATCTCACCCAAGGAATTGACGCTGTACGAGCGATT
GCGGCGACTAGACTTCCACCCCAAGACGAAGGATGATTTCAAGGTCCGCA
CGGCTTATGGCGGGGCGACGTCCGTCGTGGCCTTGGCCTGCATGGTCTGC
TTGTTTTTAACCGAGCTCAAGTACTCGATGAATAAGGAGATTGTCGACCA
CATGTATGTTAATTCCTCGCGGGACACCCGACTGCTATTCAATTTCAACA
TGACCTTTCCCTCGGTATCGTGTCAGTTGTTGAGCGCCGATGCGATGGAC
CCGTTGGGGAATAAACAGGAGGGGGTGGAGAGCCATGTGTTCAAGACGCG
ATTAGATGCGGCAGGCAATCCACTCTCGGCAAAAACGTGGCATAAGCTGG
GGGATACCTTTACGGATGTGGATGTGTTGGCGAAGCACGAGGAGGACAGT
AAAGCGCAGTTTGTGCAGGGGGAGGAAGAGATGGAGCAATGGGTGGAAGT
AGACGAGGACGAGGATGGAGAGGAGAGGGAGGTAGAAGATGAAGACGGGC
AAAAAGTGTGGCGGAAGATGAAAAAGGTGATTGGGAAGCGACGGAAGTGT
GGGAACTGCTACGGGGCCGGCGAGGAGGGAGAGTGCTGCAACACTTGTTA
CAGCGTCAAGGAGGCGTACGACCGAAGGGGCTGGGCGTTCATGGGCCTGA
ATGTCGAGCAATGCCAGCAAGAAAACCTGAAGAATCCTCTGGGAGAAGAA
GGGGCAGACGAAGGCTGCAACATCCATGGCTCGTTGCTGTTGACACAGGA
GAGCGGGAACGTCCACTTTGCCCCGGGCGAGCAGCTCCGGCATTCGGGCG
CCTTAAATGTGGCTGATCTGGTGATGTTCACGTTCCTTAAATTCAACATC
TCACACGAAATCCACCACATGTCGTTGGGGGAGGAATTCCCAGGTTTTAA
ATCGCCGCTGAGTAATCAGGTGCGGAGCGTGGCGGATGGGTATGGAATGT
ATCAGTATTACCTGAAGGTAGTGCCGACCGTGTATAAGCACTTGAACAAG
GCGTCCACAGTCTCGAATCAATACGCGGTCTCCGAGCACATTCGTCATAT
CAACCCTGGGAGTAATCGGGGGCTACCGGGCGTGTGGTTCTTTTATGACA
CGTCTCCGGTGCATGTTGAGTTTGAGGAGAGGAGGAGAGGACTGTTACCG
TTCTTGACGAGTGTGTGCGCGATTGTTGGGGGCGTATTCTCAGTCTTCGG
GGTAGTCGATGGCGTAGTGCATAACTTGATTCAAAGGGGTGTAGGAGGCG
GGATGAAGAAAGGGGGGGCGCCTGGGAGTTAG
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Coding sequence (CDS) from alignment at chr5:323251..324582-

>NO05G01090.1 ID=NO05G01090.1|Name=NO05G01090.1|organism=Nannochloropsis oceanica|type=CDS|length=1332bp|location=Sequence derived from alignment at chr5:323251..324582- (Nannochloropsis oceanica)
ATGATCTCGCCCAACATCTCACCCAAGGAATTGACGCTGTACGAGCGATT
GCGGCGACTAGACTTCCACCCCAAGACGAAGGATGATTTCAAGGTCCGCA
CGGCTTATGGCGGGGCGACGTCCGTCGTGGCCTTGGCCTGCATGGTCTGC
TTGTTTTTAACCGAGCTCAAGTACTCGATGAATAAGGAGATTGTCGACCA
CATGTATGTTAATTCCTCGCGGGACACCCGACTGCTATTCAATTTCAACA
TGACCTTTCCCTCGGTATCGTGTCAGTTGTTGAGCGCCGATGCGATGGAC
CCGTTGGGGAATAAACAGGAGGGGGTGGAGAGCCATGTGTTCAAGACGCG
ATTAGATGCGGCAGGCAATCCACTCTCGGCAAAAACGTGGCATAAGCTGG
GGGATACCTTTACGGATGTGGATGTGTTGGCGAAGCACGAGGAGGACAGT
AAAGCGCAGTTTGTGCAGGGGGAGGAAGAGATGGAGCAATGGGTGGAAGT
AGACGAGGACGAGGATGGAGAGGAGAGGGAGGTAGAAGATGAAGACGGGC
AAAAAGTGTGGCGGAAGATGAAAAAGGTGATTGGGAAGCGACGGAAGTGT
GGGAACTGCTACGGGGCCGGCGAGGAGGGAGAGTGCTGCAACACTTGTTA
CAGCGTCAAGGAGGCGTACGACCGAAGGGGCTGGGCGTTCATGGGCCTGA
ATGTCGAGCAATGCCAGCAAGAAAACCTGAAGAATCCTCTGGGAGAAGAA
GGGGCAGACGAAGGCTGCAACATCCATGGCTCGTTGCTGTTGACACAGGA
GAGCGGGAACGTCCACTTTGCCCCGGGCGAGCAGCTCCGGCATTCGGGCG
CCTTAAATGTGGCTGATCTGGTGATGTTCACGTTCCTTAAATTCAACATC
TCACACGAAATCCACCACATGTCGTTGGGGGAGGAATTCCCAGGTTTTAA
ATCGCCGCTGAGTAATCAGGTGCGGAGCGTGGCGGATGGGTATGGAATGT
ATCAGTATTACCTGAAGGTAGTGCCGACCGTGTATAAGCACTTGAACAAG
GCGTCCACAGTCTCGAATCAATACGCGGTCTCCGAGCACATTCGTCATAT
CAACCCTGGGAGTAATCGGGGGCTACCGGGCGTGTGGTTCTTTTATGACA
CGTCTCCGGTGCATGTTGAGTTTGAGGAGAGGAGGAGAGGACTGTTACCG
TTCTTGACGAGTGTGTGCGCGATTGTTGGGGGCGTATTCTCAGTCTTCGG
GGTAGTCGATGGCGTAGTGCATAACTTGATTCAAAGGGGTGTAGGAGGCG
GGATGAAGAAAGGGGGGGCGCCTGGGAGTTAG
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Synonyms
Publications