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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr5 | genome | chr5:319672..322101 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G01080.1 vs.
Match: EWM28309.1 (phosphoribosylformylglycinamidine cyclo-ligase [Nannochloropsis gaditana]) HSP 1 Score: 843.6 bits (2178), Expect = 4.700e-241 Identity = 451/697 (64.71%), Postives = 529/697 (75.90%), Query Frame = 0
Query: 50 RSAGLITSGSPIDPTDTTPT--NILIIGNGGREYALAESLLRVSTPRKIYVAPGNAGTQQLFPPRVLNVPELNVNDGEDIVAFARKEAIDLVVVGPEGPLVGGLGDQLREKGIPCFGPNAAAARLEGSKAWAKEFMQRHHIPTAVHATFSDFATAGDYVQQHTLPVVIKVSSLAGGKGVTVAATYEEALAALEAIMGPAAVFGIEAGREVVVEECLVGDEVSVMAMCDGNRVVTCLPCARDFKRLLDSDKGPNTGGMGSIAPVPGLTPAVESKMRDILQQVVEGMKEEGHPYHGVLYGGFMLTRKEGGKEEGWEEEKREPKVLEFNCRFGDPETQSLLPLLPSNTSLAALMLQCVQGAS-RETVAEKGSGT-EDAAWEG--FAATVIAASESYPTSSWPIKAHIIHGLPQAACVPGVHSVVHAGTVRKVLANGARVMTVSGGRVLGVTGKASTLRLAILQAYHGLSEIFFQGMQYRTDIGADAVRSARAPVRVAVLGSTKGTSILPLLKGKPGQYDVVLVLSDKELENGLLENARAAGVKDCRYVGGE-GEGGKAAM------EKIEVAMEEAQAEVLLLNGYNRILSPRLVRILRGRCLNVHPSLLPDFAGHFDLAVHQAVLDAKRTQSGCTVHFVTDDVDQGPVLVQKTCVVEPGVDTAAMLKAKVQALETEAWEEALRVYQEDLPRVTQTIMAM 734
RS G+I S SP T T T +L+IG+GGRE+AL ++LLR+S+P IYVAPGNAGTQQL PP V+NVPEL ND + I FA+K I++VVVGPE PL GL D LRE IPCFGP+AAAARLEGSKAWAK FM RH IPTA HATFSD A +YV+ TLP+V+K S LAGGKGVT+A + E+A ALEAIMG VFG AG EVV+EE LVGDEVS +A CDG+ V CLP ARD+KRL + D GPNTGGMGS APV LT + + +++IL V+GM+EEGHPYHGVLYGG ++T K G E+G + E KVLEFNCRFGDPE QS+LPLL LA LMLQC QG +T + T D + FAATVIAASE YPT++ IK HIIHGLP A VPGV SV AGT R VLANGARV+TVSGGRVLGVTG+A+TLRLA+L AYHGLSEI FQGM+ RTDIGA AVRS PVRVA+LGS++GTS+ +L GK G ++VVLV+SD + NG+L A+AA V DCR++G + G G + M EKIEVAMEE++AE+LLLNGY RILSPRL R+LRGRCLN+HPSLLPDF GHFDLAVHQAVLDA RT SGC+VHFVT++VDQGPVL+QKTC VEPG DTAA LKAKVQ LE AWEEA+RVYQEDLP + + I++M
Sbjct: 47 RSVGIIASSSPNIETTTNHTARKVLVIGSGGREFALTQALLRLSSPEAIYVAPGNAGTQQLSPPVVVNVPELKPNDFKGITDFAQKHGIEIVVVGPEDPLTNGLQDFLRESNIPCFGPSAAAARLEGSKAWAKAFMNRHQIPTARHATFSDLTAALEYVEHQTLPMVVKASGLAGGKGVTIAHSREDARKALEAIMGTTPVFGPAAGAEVVIEEYLVGDEVSAIAFCDGDSVAACLPFARDYKRLEEHDSGPNTGGMGSFAPVTDLTTDIAASIQNILVTTVKGMREEGHPYHGVLYGGLIIT-KGGAAEDG----REEVKVLEFNCRFGDPEAQSILPLLSDKVDLAKLMLQCAQGGRFGDTTGRLAASTPRDLTTKNNTFAATVIAASEGYPTATGSIKPHIIHGLPLACRVPGVCSVAQAGTARLVLANGARVVTVSGGRVLGVTGEATTLRLALLHAYHGLSEIRFQGMRCRTDIGAQAVRS--QPVRVAILGSSRGTSVSKILTGKRGVFEVVLVMSDTQDANGILSKAQAAHVPDCRFLGADSGGNGDSEMARDTLEEKIEVAMEESKAEILLLNGYRRILSPRLCRVLRGRCLNIHPSLLPDFGGHFDLAVHQAVLDAGRTSSGCSVHFVTENVDQGPVLIQKTCSVEPGFDTAATLKAKVQELEERAWEEAVRVYQEDLPSIARAILSM 736
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G01080.1 ID=NO05G01080.1|Name=NO05G01080.1|organism=Nannochloropsis oceanica|type=mRNA|length=2430bp
GTTTTGCAATCTATTGACGCTGGCAGACTAACGCGACCACCTACATATTA
ACGAACACAAGTCCAGCCCAAACTGACGCCCGAGAACTGCAGGTCAGCAC
GACTGTTGCTTGAGACTGCTGCCAAAGATATCATGCCACCACCCTGTCAA
TCCCCAATCAAGCAGCTCATCGTCGTCCTATGCTTTCTCCTGCATACCAT
TGTTGTCGTCCATGGCTGGACGTCCTCCCTTTCCTCATCTTTGCCTTGTC
TCATGATAAGACAACGATATCAAGGAAGAAGAAGTGCCGGCCTCATTACA
AGCGGCAGCCCCATTGACCCTACCGACACCACCCCAACAAACATCCTCAT
CATTGGCAACGGCGGCCGGGAATACGCTCTTGCCGAATCTCTGCTAAGGG
TTTCCACGCCGCGAAAAATATACGTTGCCCCGGGCAACGCTGGTACGCAG
CAGCTTTTTCCTCCCCGGGTCTTAAATGTACCCGAACTCAATGTCAACGA
CGGGGAGGACATCGTGGCTTTCGCCCGCAAAGAGGCCATTGATCTTGTCG
TGGTCGGGCCTGAGGGCCCTCTAGTTGGAGGACTGGGAGATCAATTACGC
GAGAAGGGCATACCATGTTTTGGTCCCAATGCGGCCGCTGCCCGGTTGGA
AGGAAGCAAGGCCTGGGCTAAGGAATTTATGCAGCGTCACCATATCCCCA
CCGCTGTCCACGCCACGTTTTCGGACTTCGCCACCGCAGGAGACTATGTG
CAACAGCACACATTGCCGGTGGTCATCAAGGTATCAAGCTTGGCCGGAGG
GAAGGGCGTGACAGTGGCAGCCACGTATGAGGAGGCCCTGGCAGCTTTAG
AGGCAATTATGGGGCCAGCAGCCGTGTTCGGCATCGAGGCAGGGAGGGAG
GTCGTGGTGGAAGAATGTTTAGTGGGAGACGAAGTATCAGTCATGGCGAT
GTGTGATGGAAATAGGGTAGTGACGTGCTTGCCATGTGCCCGTGATTTTA
AACGGTTGTTGGACAGCGACAAAGGCCCAAATACAGGAGGGATGGGTTCC
ATCGCCCCTGTCCCTGGTTTAACGCCTGCTGTCGAAAGTAAGATGCGTGA
TATTTTGCAACAGGTAGTAGAGGGGATGAAGGAGGAGGGTCATCCGTATC
ATGGGGTATTGTATGGGGGGTTCATGCTCACGAGGAAGGAGGGAGGGAAG
GAAGAGGGGTGGGAGGAGGAGAAGAGAGAGCCAAAGGTGCTGGAGTTTAA
CTGTCGATTCGGTGACCCCGAGACGCAGTCTCTCCTACCCTTGTTACCTT
CAAATACAAGCCTGGCAGCTTTAATGCTTCAGTGCGTGCAAGGAGCGAGC
CGCGAAACAGTTGCAGAAAAGGGAAGTGGGACAGAGGACGCAGCGTGGGA
GGGATTTGCGGCCACCGTGATCGCCGCCTCCGAAAGCTACCCAACCTCAT
CTTGGCCCATAAAAGCACACATTATTCATGGCCTACCGCAGGCGGCGTGT
GTCCCAGGAGTGCATAGCGTGGTGCATGCAGGGACAGTCAGGAAAGTCCT
CGCCAACGGCGCCCGCGTGATGACCGTGTCCGGCGGGCGCGTCCTCGGAG
TGACAGGCAAAGCCTCCACGTTGCGTCTGGCAATCCTTCAAGCCTATCAT
GGTCTAAGTGAAATTTTTTTTCAGGGCATGCAGTACAGGACGGACATTGG
CGCAGATGCGGTTAGGTCGGCGCGCGCCCCGGTGCGGGTGGCCGTGCTGG
GTTCCACGAAGGGGACAAGCATCTTGCCTTTACTAAAAGGTAAACCTGGT
CAGTATGATGTGGTGCTTGTCTTATCGGACAAAGAGCTGGAGAATGGATT
GTTGGAGAATGCACGGGCCGCGGGTGTGAAGGATTGTCGGTATGTGGGTG
GGGAAGGGGAAGGAGGCAAAGCGGCTATGGAGAAGATTGAGGTCGCCATG
GAGGAAGCTCAAGCAGAAGTCCTCCTTTTGAATGGATACAATCGAATCTT
GTCACCGCGTTTGGTGCGAATTTTGCGAGGTCGATGTTTGAATGTCCACC
CTTCGTTACTGCCTGATTTTGCGGGACATTTTGACCTGGCTGTGCATCAA
GCGGTCTTGGACGCAAAGAGGACTCAAAGTGGTTGCACGGTTCATTTTGT
TACAGACGACGTGGATCAGGGCCCGGTGTTGGTGCAAAAAACATGCGTGG
TTGAACCGGGTGTGGACACGGCAGCGATGCTCAAGGCCAAGGTACAGGCC
TTGGAGACGGAGGCGTGGGAAGAGGCTTTGCGGGTGTACCAAGAGGACTT
GCCGAGGGTGACGCAGACGATTATGGCCATGGGAGTGAAGCGATAGAGGG
CATGATAGGTTGGAAATATATCGAAATGAACTCAAATCAAAGTAACAAGG
TGTAAACCTCCCCCACGTAGACGAAGAAGG back to topprotein sequence of NO05G01080.1 >NO05G01080.1-protein ID=NO05G01080.1-protein|Name=NO05G01080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=738bp
MPPPCQSPIKQLIVVLCFLLHTIVVVHGWTSSLSSSLPCLMIRQRYQGRR
SAGLITSGSPIDPTDTTPTNILIIGNGGREYALAESLLRVSTPRKIYVAP
GNAGTQQLFPPRVLNVPELNVNDGEDIVAFARKEAIDLVVVGPEGPLVGG
LGDQLREKGIPCFGPNAAAARLEGSKAWAKEFMQRHHIPTAVHATFSDFA
TAGDYVQQHTLPVVIKVSSLAGGKGVTVAATYEEALAALEAIMGPAAVFG
IEAGREVVVEECLVGDEVSVMAMCDGNRVVTCLPCARDFKRLLDSDKGPN
TGGMGSIAPVPGLTPAVESKMRDILQQVVEGMKEEGHPYHGVLYGGFMLT
RKEGGKEEGWEEEKREPKVLEFNCRFGDPETQSLLPLLPSNTSLAALMLQ
CVQGASRETVAEKGSGTEDAAWEGFAATVIAASESYPTSSWPIKAHIIHG
LPQAACVPGVHSVVHAGTVRKVLANGARVMTVSGGRVLGVTGKASTLRLA
ILQAYHGLSEIFFQGMQYRTDIGADAVRSARAPVRVAVLGSTKGTSILPL
LKGKPGQYDVVLVLSDKELENGLLENARAAGVKDCRYVGGEGEGGKAAME
KIEVAMEEAQAEVLLLNGYNRILSPRLVRILRGRCLNVHPSLLPDFAGHF
DLAVHQAVLDAKRTQSGCTVHFVTDDVDQGPVLVQKTCVVEPGVDTAAML
KAKVQALETEAWEEALRVYQEDLPRVTQTIMAMGVKR* back to topmRNA from alignment at chr5:319672..322101- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G01080.1 ID=NO05G01080.1|Name=NO05G01080.1|organism=Nannochloropsis oceanica|type=mRNA|length=2430bp|location=Sequence derived from alignment at chr5:319672..322101- (Nannochloropsis oceanica)
GTTTTGCAATCTATTGACGCTGGCAGACTAACGCGACCACCTACATATTA
ACGAACACAAGTCCAGCCCAAACTGACGCCCGAGAACTGCAGGTCAGCAC
GACTGTTGCTTGAGACTGCTGCCAAAGATATCATGCCACCACCCTGTCAA
TCCCCAATCAAGCAGCTCATCGTCGTCCTATGCTTTCTCCTGCATACCAT
TGTTGTCGTCCATGGCTGGACGTCCTCCCTTTCCTCATCTTTGCCTTGTC
TCATGATAAGACAACGATATCAAGGAAGAAGAAGTGCCGGCCTCATTACA
AGCGGCAGCCCCATTGACCCTACCGACACCACCCCAACAAACATCCTCAT
CATTGGCAACGGCGGCCGGGAATACGCTCTTGCCGAATCTCTGCTAAGGG
TTTCCACGCCGCGAAAAATATACGTTGCCCCGGGCAACGCTGGTACGCAG
CAGCTTTTTCCTCCCCGGGTCTTAAATGTACCCGAACTCAATGTCAACGA
CGGGGAGGACATCGTGGCTTTCGCCCGCAAAGAGGCCATTGATCTTGTCG
TGGTCGGGCCTGAGGGCCCTCTAGTTGGAGGACTGGGAGATCAATTACGC
GAGAAGGGCATACCATGTTTTGGTCCCAATGCGGCCGCTGCCCGGTTGGA
AGGAAGCAAGGCCTGGGCTAAGGAATTTATGCAGCGTCACCATATCCCCA
CCGCTGTCCACGCCACGTTTTCGGACTTCGCCACCGCAGGAGACTATGTG
CAACAGCACACATTGCCGGTGGTCATCAAGGTATCAAGCTTGGCCGGAGG
GAAGGGCGTGACAGTGGCAGCCACGTATGAGGAGGCCCTGGCAGCTTTAG
AGGCAATTATGGGGCCAGCAGCCGTGTTCGGCATCGAGGCAGGGAGGGAG
GTCGTGGTGGAAGAATGTTTAGTGGGAGACGAAGTATCAGTCATGGCGAT
GTGTGATGGAAATAGGGTAGTGACGTGCTTGCCATGTGCCCGTGATTTTA
AACGGTTGTTGGACAGCGACAAAGGCCCAAATACAGGAGGGATGGGTTCC
ATCGCCCCTGTCCCTGGTTTAACGCCTGCTGTCGAAAGTAAGATGCGTGA
TATTTTGCAACAGGTAGTAGAGGGGATGAAGGAGGAGGGTCATCCGTATC
ATGGGGTATTGTATGGGGGGTTCATGCTCACGAGGAAGGAGGGAGGGAAG
GAAGAGGGGTGGGAGGAGGAGAAGAGAGAGCCAAAGGTGCTGGAGTTTAA
CTGTCGATTCGGTGACCCCGAGACGCAGTCTCTCCTACCCTTGTTACCTT
CAAATACAAGCCTGGCAGCTTTAATGCTTCAGTGCGTGCAAGGAGCGAGC
CGCGAAACAGTTGCAGAAAAGGGAAGTGGGACAGAGGACGCAGCGTGGGA
GGGATTTGCGGCCACCGTGATCGCCGCCTCCGAAAGCTACCCAACCTCAT
CTTGGCCCATAAAAGCACACATTATTCATGGCCTACCGCAGGCGGCGTGT
GTCCCAGGAGTGCATAGCGTGGTGCATGCAGGGACAGTCAGGAAAGTCCT
CGCCAACGGCGCCCGCGTGATGACCGTGTCCGGCGGGCGCGTCCTCGGAG
TGACAGGCAAAGCCTCCACGTTGCGTCTGGCAATCCTTCAAGCCTATCAT
GGTCTAAGTGAAATTTTTTTTCAGGGCATGCAGTACAGGACGGACATTGG
CGCAGATGCGGTTAGGTCGGCGCGCGCCCCGGTGCGGGTGGCCGTGCTGG
GTTCCACGAAGGGGACAAGCATCTTGCCTTTACTAAAAGGTAAACCTGGT
CAGTATGATGTGGTGCTTGTCTTATCGGACAAAGAGCTGGAGAATGGATT
GTTGGAGAATGCACGGGCCGCGGGTGTGAAGGATTGTCGGTATGTGGGTG
GGGAAGGGGAAGGAGGCAAAGCGGCTATGGAGAAGATTGAGGTCGCCATG
GAGGAAGCTCAAGCAGAAGTCCTCCTTTTGAATGGATACAATCGAATCTT
GTCACCGCGTTTGGTGCGAATTTTGCGAGGTCGATGTTTGAATGTCCACC
CTTCGTTACTGCCTGATTTTGCGGGACATTTTGACCTGGCTGTGCATCAA
GCGGTCTTGGACGCAAAGAGGACTCAAAGTGGTTGCACGGTTCATTTTGT
TACAGACGACGTGGATCAGGGCCCGGTGTTGGTGCAAAAAACATGCGTGG
TTGAACCGGGTGTGGACACGGCAGCGATGCTCAAGGCCAAGGTACAGGCC
TTGGAGACGGAGGCGTGGGAAGAGGCTTTGCGGGTGTACCAAGAGGACTT
GCCGAGGGTGACGCAGACGATTATGGCCATGGGAGTGAAGCGATAGAGGG
CATGATAGGTTGGAAATATATCGAAATGAACTCAAATCAAAGTAACAAGG
TGTAAACCTCCCCCACGTAGACGAAGAAGG back to topCoding sequence (CDS) from alignment at chr5:319672..322101- >NO05G01080.1 ID=NO05G01080.1|Name=NO05G01080.1|organism=Nannochloropsis oceanica|type=CDS|length=2214bp|location=Sequence derived from alignment at chr5:319672..322101- (Nannochloropsis oceanica)
ATGCCACCACCCTGTCAATCCCCAATCAAGCAGCTCATCGTCGTCCTATG
CTTTCTCCTGCATACCATTGTTGTCGTCCATGGCTGGACGTCCTCCCTTT
CCTCATCTTTGCCTTGTCTCATGATAAGACAACGATATCAAGGAAGAAGA
AGTGCCGGCCTCATTACAAGCGGCAGCCCCATTGACCCTACCGACACCAC
CCCAACAAACATCCTCATCATTGGCAACGGCGGCCGGGAATACGCTCTTG
CCGAATCTCTGCTAAGGGTTTCCACGCCGCGAAAAATATACGTTGCCCCG
GGCAACGCTGGTACGCAGCAGCTTTTTCCTCCCCGGGTCTTAAATGTACC
CGAACTCAATGTCAACGACGGGGAGGACATCGTGGCTTTCGCCCGCAAAG
AGGCCATTGATCTTGTCGTGGTCGGGCCTGAGGGCCCTCTAGTTGGAGGA
CTGGGAGATCAATTACGCGAGAAGGGCATACCATGTTTTGGTCCCAATGC
GGCCGCTGCCCGGTTGGAAGGAAGCAAGGCCTGGGCTAAGGAATTTATGC
AGCGTCACCATATCCCCACCGCTGTCCACGCCACGTTTTCGGACTTCGCC
ACCGCAGGAGACTATGTGCAACAGCACACATTGCCGGTGGTCATCAAGGT
ATCAAGCTTGGCCGGAGGGAAGGGCGTGACAGTGGCAGCCACGTATGAGG
AGGCCCTGGCAGCTTTAGAGGCAATTATGGGGCCAGCAGCCGTGTTCGGC
ATCGAGGCAGGGAGGGAGGTCGTGGTGGAAGAATGTTTAGTGGGAGACGA
AGTATCAGTCATGGCGATGTGTGATGGAAATAGGGTAGTGACGTGCTTGC
CATGTGCCCGTGATTTTAAACGGTTGTTGGACAGCGACAAAGGCCCAAAT
ACAGGAGGGATGGGTTCCATCGCCCCTGTCCCTGGTTTAACGCCTGCTGT
CGAAAGTAAGATGCGTGATATTTTGCAACAGGTAGTAGAGGGGATGAAGG
AGGAGGGTCATCCGTATCATGGGGTATTGTATGGGGGGTTCATGCTCACG
AGGAAGGAGGGAGGGAAGGAAGAGGGGTGGGAGGAGGAGAAGAGAGAGCC
AAAGGTGCTGGAGTTTAACTGTCGATTCGGTGACCCCGAGACGCAGTCTC
TCCTACCCTTGTTACCTTCAAATACAAGCCTGGCAGCTTTAATGCTTCAG
TGCGTGCAAGGAGCGAGCCGCGAAACAGTTGCAGAAAAGGGAAGTGGGAC
AGAGGACGCAGCGTGGGAGGGATTTGCGGCCACCGTGATCGCCGCCTCCG
AAAGCTACCCAACCTCATCTTGGCCCATAAAAGCACACATTATTCATGGC
CTACCGCAGGCGGCGTGTGTCCCAGGAGTGCATAGCGTGGTGCATGCAGG
GACAGTCAGGAAAGTCCTCGCCAACGGCGCCCGCGTGATGACCGTGTCCG
GCGGGCGCGTCCTCGGAGTGACAGGCAAAGCCTCCACGTTGCGTCTGGCA
ATCCTTCAAGCCTATCATGGTCTAAGTGAAATTTTTTTTCAGGGCATGCA
GTACAGGACGGACATTGGCGCAGATGCGGTTAGGTCGGCGCGCGCCCCGG
TGCGGGTGGCCGTGCTGGGTTCCACGAAGGGGACAAGCATCTTGCCTTTA
CTAAAAGGTAAACCTGGTCAGTATGATGTGGTGCTTGTCTTATCGGACAA
AGAGCTGGAGAATGGATTGTTGGAGAATGCACGGGCCGCGGGTGTGAAGG
ATTGTCGGTATGTGGGTGGGGAAGGGGAAGGAGGCAAAGCGGCTATGGAG
AAGATTGAGGTCGCCATGGAGGAAGCTCAAGCAGAAGTCCTCCTTTTGAA
TGGATACAATCGAATCTTGTCACCGCGTTTGGTGCGAATTTTGCGAGGTC
GATGTTTGAATGTCCACCCTTCGTTACTGCCTGATTTTGCGGGACATTTT
GACCTGGCTGTGCATCAAGCGGTCTTGGACGCAAAGAGGACTCAAAGTGG
TTGCACGGTTCATTTTGTTACAGACGACGTGGATCAGGGCCCGGTGTTGG
TGCAAAAAACATGCGTGGTTGAACCGGGTGTGGACACGGCAGCGATGCTC
AAGGCCAAGGTACAGGCCTTGGAGACGGAGGCGTGGGAAGAGGCTTTGCG
GGTGTACCAAGAGGACTTGCCGAGGGTGACGCAGACGATTATGGCCATGG
GAGTGAAGCGATAG back to top
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