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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr5 | genome | chr5:313798..316645 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G01060.1 vs.
Match: EWM28245.1 (cytochrome b5 [Nannochloropsis gaditana]) HSP 1 Score: 255.4 bits (651), Expect = 1.000e-64 Identity = 125/130 (96.15%), Postives = 130/130 (100.00%), Query Frame = 0
Query: 1 MAPKQYTLDEVAGHNTEKDIWLIIGNEKTGGPKVYDVTKYLEEHPGGSEVLLDHAGKYADEMFEDIGHSGDAKEKLKTLLVGELTPEDVEKLASEKVSRASELPSKGGLNPFAVVVLLVAIVLGLYLSKQ 131
MAP+Q+TL+EVAGHN+EKDIWLIIGNEKTGGPKVYDVTKYLEEHPGGSEVLLDHAGKYADEMFEDIGHSGDAKEKLKTL+VGELTPEDVEKLASEKVSRASELPSKGGLNPFAVVVLLVAIVLGLYLSKQ
Sbjct: 1 MAPQQFTLEEVAGHNSEKDIWLIIGNEKTGGPKVYDVTKYLEEHPGGSEVLLDHAGKYADEMFEDIGHSGDAKEKLKTLMVGELTPEDVEKLASEKVSRASELPSKGGLNPFAVVVLLVAIVLGLYLSKQ 130
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G01060.1 ID=NO05G01060.1|Name=NO05G01060.1|organism=Nannochloropsis oceanica|type=mRNA|length=2530bp GTAACTTATCAATTTTATAGACACAATAAGCAAGGCGAGGTGTTCCTTGT TTGGATTCGTGCACCCTTTTTGTCCGCATACGTGGCTTACTGGTCACTCT CTGTCATCATCGGCTTCATCATTGCTTGCCCCCCTCTCGACACGGGAGCG CGACCCTCTTCATCAATCCAATCCCCACCTGTTACTCTGGTCTTACAATC TCTCTCCATACACCCCTTCATCTCAAACAGATAACTTCACCCGCACGCGC CACTCAGTAGCGTCATGGCCCCCAAGCAGTACACATTGGACGAGGTTGCG GGCCACAATACAGAGAAGGACATCTGGCTCATCATCGGAAACGAGAAGAC AGGCGGCCCCAAGGTGTACGATGTAACCAAGTACCTAGAAGAACACCCGG GAGGGTCAGAGGTTCTGCTTGACCACGCCGGGAAGTACGCAGATGAGATG TTTGAGGACATTGGGCACTCGGGCGATGCCAAGGAAAAGCTCAAGACGCT GTTGGTGGGCGAGTTGACGCCCGAGGACGTGGAGAAGTTAGCCAGCGAGA AAGTGTCGCGGGCGTCCGAGTTGCCATCCAAGGGGGGTTTGAATCCCTTC GCCGTGGTGGTACTACTAGTAGCAATTGTCCTGGGTCTGTACTTGTCGAA GCAATACAAGCAGTAGAGAGGAGACGCTGGAGGGCAGGAGAGGGAGGGCT TGCTTGTTTCATTTTTGATGGTTTGACAGGGAGAAGGAAATGAGATGGTG GTAGAGATGAACATGCGTGCATGAAGGAGAAGGAATTGAAGGAGGGAGGG AGAGAGGGAGGAAGGGAGGGAGGGAGTAGCGGGAGGAGGATATGTCGGAG AGAGAGTGTGGGTGAGTGTTTGCATGTGTGTGTATGTGACGGGCGATGAA GGTCGCACAAGCAGCTGAAGAAAATGCAATAGAAGAGGGGGGAAAGGAAA AGGCATCAGACGGTAGTATTTGGTATGAAAAAGAAAGAGTAACAACAACA CAGGACAAAACATAACTGAGGGTACCTGCGGAATAAGCGTCCGCCATTAC CATGATGCCATGCCCTCCACCTCCAAAAAGGGAATATTAGGGTTGATTGA CAGGACGTAAAATACGGGATATACAAGCTGTAGCCATGGATTGACGGCCT TCTCGAAGGAGAAAAGGAAGGCACGCTAACCTCACATTCTTTCTCCCCTT TCACATACCGTCCGTCGTTCTTCTTGCATTTCCTCGTCCTTCTCCCACCA TAGCCCTCCCTCGCTAGCTATCCTTCCGAAGTTGCAATGTCACAAACTTG CCGGCTTATCGCAGCTGCAACTGCTGCTGCTGCCGCCGGCTATTGTGGTG GTGGAGGAGGGGACATTCCTTCCCACCTTTGCTGTCAGCAAATCAAGCAT GAACCAAGGCGGTGGTAGGTGAGCCACCCTTGCGAGCGATGAACACCAAA ACGAACCACACACAAAGTACAGGCTGGCCGTATGTATTTCTGCACTCACT TCAAATTTCACGACAAACATTTACCGACACTCCATCCGTCCCCCCGTCCC TCCCTCCCGCTCTTGTACATGCGGTCACATCTCTCTGTTTTCTTCCGGTC GATTCTTTTTATTCTTTGAGTTATTTTTTGTGTAGACTTTGTACTCGAGG TTTCTGTATCCTGGTCGTCCTCCTCCTTGTCAATTTCATCCTTTTCTAAG TCGCGTTTCTTCAGGTATTTACCCTTCTTCTTCTACTATCATCTGCTTCC ACCATGTCACACATTAACAACGCTATCCATCCTTTCCTCCCTCCCTCCCT CCTTCAATGTGCATCCTGAAATAGCTTCAAAAAGAAGACGAAAGGCAAAC GATATAAAAGATAGATTACAAGGCACTTATCGCCTCTTCCCCTATCTCCC TTTCTCCACTTCTCCCTCCCTCCGCCCCTCACAACCAAGACCAAACCGAA TTATATATGAAACCATCCCTTCCTCCTTCCCTACACACATGCCGTGCCCC GCGGCATAAGATAATAATCAAACGGTGGCGGATCCGGCAAAAACACACTC ACCGCTCCCCCTCCTCCTCCTGCCCCATCCCCCATCCCAGCCGCTGCAAC AATATAGTTCTTACCTCCTCCTTTCCTCTCTCCTGCTCTACTCCCGGCAC GTAGGGCACTCGAAGTCATAAGGGATAGCCCCCCTGTAGCTGCTGCTGGT GCTGGCGCTCCTGCTGCTGCTAGAGGGTGGTGTGGATAATCCAACCTAAA CGACTTCAACATTTGAGACGCTAGCCCAACCAAGGCATCTTCTTCTACTC CTGTCAGAGAAGCGAGCTCCGGCCTCCAAGTCGGAGAGACGCCTAGGGCG AGCCGTGCCAGGTACAGAAGGAGAGCAGCAACAAAGGAGGGAGGGTAGGG AGCTAGTGAGGTGAACTCTTGGACGATCGCATACGAGGCAAAAAAGTGCG CGTGTTTTCGAAGTTGGGCTGGGGCGATCTGCTGCTGCTGCTGTTGTTGT TGCTTTTGGGCAATGTCTTCCTTGGTCAGC back to topprotein sequence of NO05G01060.1 >NO05G01060.1-protein ID=NO05G01060.1-protein|Name=NO05G01060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=134bp MAPKQYTLDEVAGHNTEKDIWLIIGNEKTGGPKVYDVTKYLEEHPGGSEV LLDHAGKYADEMFEDIGHSGDAKEKLKTLLVGELTPEDVEKLASEKVSRA SELPSKGGLNPFAVVVLLVAIVLGLYLSKQYKQ* back to topmRNA from alignment at chr5:313798..316645- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G01060.1 ID=NO05G01060.1|Name=NO05G01060.1|organism=Nannochloropsis oceanica|type=mRNA|length=2848bp|location=Sequence derived from alignment at chr5:313798..316645- (Nannochloropsis oceanica) GTAACTTATCAATTTTATAGACACAATAAGCAAGGCGAGGTGTTCCTTGT
TTGGATTCGTGCACCCTTTTTGTCCGCATACGTGGCTTACTGGTCACTCT
CTGTCATCATCGGCTTCATCATTGCTTGCCCCCCTCTCGACACGGGAGCG
CGACCCTCTTCATCAATCCAATCCCCACCTGTTACTCTGGTCTTACAATC
TCTCTCCATACACCCCTTCATCTCAAACAGATAACTTCACCCGCACGCGC
CACTCAGTAGCGTCATGGCCCCCAAGCAGTACACATTGGACGAGGTTGCG
GGCCACAATACAGAGAAGGACATCTGGCTCATCATCGGAAACGAGAAGAC
AGGTGCGTAATTTTACTTTTTATTCGACAGACAGGTTTGTCATGAACGAT
GTACGTCCTGGAAATACCCCTTTTACGTACTCCTCAATGCTACCCTCCTG
GCTTCCGGAAGCATCCATCGAATTGATCGCTTCCCCCACCCCCTTCCCCC
CCTCCCTCCCCCCATACGAACATAGGCGGCCCCAAGGTGTACGATGTAAC
CAAGTACCTAGAAGAACACCCGGGAGGGTCAGAGGTTCTGCTTGACCACG
CCGGGAAGTACGCAGATGAGATGTTTGAGGACATTGGGCACTCGGGCGAT
GCCAAGGAAAAGCTCAAGACGCTGTTGGTGGGCGAGTTGACGGTAAGTTA
GGGAAAGAAGCGTTGGAGATAGGAAAACAGTATGTTGCAATTTGTTTCCA
TGATTGTTTTTGTTCATGCAGACATGAGCAACCGCTAGTTCAACTTTCCG
CCCTCTCTCCCTGCCCTCCACCCCCTTACACACCCAGCCCGAGGACGTGG
AGAAGTTAGCCAGCGAGAAAGTGTCGCGGGCGTCCGAGTTGCCATCCAAG
GGGGGTTTGAATCCCTTCGCCGTGGTGGTACTACTAGTAGCAATTGTCCT
GGGTCTGTACTTGTCGAAGCAATACAAGCAGTAGAGAGGAGACGCTGGAG
GGCAGGAGAGGGAGGGCTTGCTTGTTTCATTTTTGATGGTTTGACAGGGA
GAAGGAAATGAGATGGTGGTAGAGATGAACATGCGTGCATGAAGGAGAAG
GAATTGAAGGAGGGAGGGAGAGAGGGAGGAAGGGAGGGAGGGAGTAGCGG
GAGGAGGATATGTCGGAGAGAGAGTGTGGGTGAGTGTTTGCATGTGTGTG
TATGTGACGGGCGATGAAGGTCGCACAAGCAGCTGAAGAAAATGCAATAG
AAGAGGGGGGAAAGGAAAAGGCATCAGACGGTAGTATTTGGTATGAAAAA
GAAAGAGTAACAACAACACAGGACAAAACATAACTGAGGGTACCTGCGGA
ATAAGCGTCCGCCATTACCATGATGCCATGCCCTCCACCTCCAAAAAGGG
AATATTAGGGTTGATTGACAGGACGTAAAATACGGGATATACAAGCTGTA
GCCATGGATTGACGGCCTTCTCGAAGGAGAAAAGGAAGGCACGCTAACCT
CACATTCTTTCTCCCCTTTCACATACCGTCCGTCGTTCTTCTTGCATTTC
CTCGTCCTTCTCCCACCATAGCCCTCCCTCGCTAGCTATCCTTCCGAAGT
TGCAATGTCACAAACTTGCCGGCTTATCGCAGCTGCAACTGCTGCTGCTG
CCGCCGGCTATTGTGGTGGTGGAGGAGGGGACATTCCTTCCCACCTTTGC
TGTCAGCAAATCAAGCATGAACCAAGGCGGTGGTAGGTGAGCCACCCTTG
CGAGCGATGAACACCAAAACGAACCACACACAAAGTACAGGCTGGCCGTA
TGTATTTCTGCACTCACTTCAAATTTCACGACAAACATTTACCGACACTC
CATCCGTCCCCCCGTCCCTCCCTCCCGCTCTTGTACATGCGGTCACATCT
CTCTGTTTTCTTCCGGTCGATTCTTTTTATTCTTTGAGTTATTTTTTGTG
TAGACTTTGTACTCGAGGTTTCTGTATCCTGGTCGTCCTCCTCCTTGTCA
ATTTCATCCTTTTCTAAGTCGCGTTTCTTCAGGTATTTACCCTTCTTCTT
CTACTATCATCTGCTTCCACCATGTCACACATTAACAACGCTATCCATCC
TTTCCTCCCTCCCTCCCTCCTTCAATGTGCATCCTGAAATAGCTTCAAAA
AGAAGACGAAAGGCAAACGATATAAAAGATAGATTACAAGGCACTTATCG
CCTCTTCCCCTATCTCCCTTTCTCCACTTCTCCCTCCCTCCGCCCCTCAC
AACCAAGACCAAACCGAATTATATATGAAACCATCCCTTCCTCCTTCCCT
ACACACATGCCGTGCCCCGCGGCATAAGATAATAATCAAACGGTGGCGGA
TCCGGCAAAAACACACTCACCGCTCCCCCTCCTCCTCCTGCCCCATCCCC
CATCCCAGCCGCTGCAACAATATAGTTCTTACCTCCTCCTTTCCTCTCTC
CTGCTCTACTCCCGGCACGTAGGGCACTCGAAGTCATAAGGGATAGCCCC
CCTGTAGCTGCTGCTGGTGCTGGCGCTCCTGCTGCTGCTAGAGGGTGGTG
TGGATAATCCAACCTAAACGACTTCAACATTTGAGACGCTAGCCCAACCA
AGGCATCTTCTTCTACTCCTGTCAGAGAAGCGAGCTCCGGCCTCCAAGTC
GGAGAGACGCCTAGGGCGAGCCGTGCCAGGTACAGAAGGAGAGCAGCAAC
AAAGGAGGGAGGGTAGGGAGCTAGTGAGGTGAACTCTTGGACGATCGCAT
ACGAGGCAAAAAAGTGCGCGTGTTTTCGAAGTTGGGCTGGGGCGATCTGC
TGCTGCTGCTGTTGTTGTTGCTTTTGGGCAATGTCTTCCTTGGTCAGC back to topCoding sequence (CDS) from alignment at chr5:313798..316645- >NO05G01060.1 ID=NO05G01060.1|Name=NO05G01060.1|organism=Nannochloropsis oceanica|type=CDS|length=402bp|location=Sequence derived from alignment at chr5:313798..316645- (Nannochloropsis oceanica) ATGGCCCCCAAGCAGTACACATTGGACGAGGTTGCGGGCCACAATACAGA GAAGGACATCTGGCTCATCATCGGAAACGAGAAGACAGGCGGCCCCAAGG TGTACGATGTAACCAAGTACCTAGAAGAACACCCGGGAGGGTCAGAGGTT CTGCTTGACCACGCCGGGAAGTACGCAGATGAGATGTTTGAGGACATTGG GCACTCGGGCGATGCCAAGGAAAAGCTCAAGACGCTGTTGGTGGGCGAGT TGACGCCCGAGGACGTGGAGAAGTTAGCCAGCGAGAAAGTGTCGCGGGCG TCCGAGTTGCCATCCAAGGGGGGTTTGAATCCCTTCGCCGTGGTGGTACT ACTAGTAGCAATTGTCCTGGGTCTGTACTTGTCGAAGCAATACAAGCAGT AG back to top
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