NO05G01060.1, NO05G01060.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G01060.1
Unique NameNO05G01060.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2530
Alignment locationchr5:313798..316645 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:313798..316645 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO05G01060.1 vs.
Match: EWM28245.1 (cytochrome b5 [Nannochloropsis gaditana])

HSP 1 Score: 255.4 bits (651), Expect = 1.000e-64
Identity = 125/130 (96.15%), Postives = 130/130 (100.00%), Query Frame = 0
Query:    1 MAPKQYTLDEVAGHNTEKDIWLIIGNEKTGGPKVYDVTKYLEEHPGGSEVLLDHAGKYADEMFEDIGHSGDAKEKLKTLLVGELTPEDVEKLASEKVSRASELPSKGGLNPFAVVVLLVAIVLGLYLSKQ 131
            MAP+Q+TL+EVAGHN+EKDIWLIIGNEKTGGPKVYDVTKYLEEHPGGSEVLLDHAGKYADEMFEDIGHSGDAKEKLKTL+VGELTPEDVEKLASEKVSRASELPSKGGLNPFAVVVLLVAIVLGLYLSKQ
Sbjct:    1 MAPQQFTLEEVAGHNSEKDIWLIIGNEKTGGPKVYDVTKYLEEHPGGSEVLLDHAGKYADEMFEDIGHSGDAKEKLKTLMVGELTPEDVEKLASEKVSRASELPSKGGLNPFAVVVLLVAIVLGLYLSKQ 130          
The following BLAST results are available for this feature:
BLAST of NO05G01060.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28245.11.000e-6496.15cytochrome b5 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G01060NO05G01060Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G01060.1NO05G01060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G01060.1.cds1NO05G01060.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G01060.1.cds2NO05G01060.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G01060.1.cds3NO05G01060.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G01060.1 ID=NO05G01060.1|Name=NO05G01060.1|organism=Nannochloropsis oceanica|type=mRNA|length=2530bp
GTAACTTATCAATTTTATAGACACAATAAGCAAGGCGAGGTGTTCCTTGT
TTGGATTCGTGCACCCTTTTTGTCCGCATACGTGGCTTACTGGTCACTCT
CTGTCATCATCGGCTTCATCATTGCTTGCCCCCCTCTCGACACGGGAGCG
CGACCCTCTTCATCAATCCAATCCCCACCTGTTACTCTGGTCTTACAATC
TCTCTCCATACACCCCTTCATCTCAAACAGATAACTTCACCCGCACGCGC
CACTCAGTAGCGTCATGGCCCCCAAGCAGTACACATTGGACGAGGTTGCG
GGCCACAATACAGAGAAGGACATCTGGCTCATCATCGGAAACGAGAAGAC
AGGCGGCCCCAAGGTGTACGATGTAACCAAGTACCTAGAAGAACACCCGG
GAGGGTCAGAGGTTCTGCTTGACCACGCCGGGAAGTACGCAGATGAGATG
TTTGAGGACATTGGGCACTCGGGCGATGCCAAGGAAAAGCTCAAGACGCT
GTTGGTGGGCGAGTTGACGCCCGAGGACGTGGAGAAGTTAGCCAGCGAGA
AAGTGTCGCGGGCGTCCGAGTTGCCATCCAAGGGGGGTTTGAATCCCTTC
GCCGTGGTGGTACTACTAGTAGCAATTGTCCTGGGTCTGTACTTGTCGAA
GCAATACAAGCAGTAGAGAGGAGACGCTGGAGGGCAGGAGAGGGAGGGCT
TGCTTGTTTCATTTTTGATGGTTTGACAGGGAGAAGGAAATGAGATGGTG
GTAGAGATGAACATGCGTGCATGAAGGAGAAGGAATTGAAGGAGGGAGGG
AGAGAGGGAGGAAGGGAGGGAGGGAGTAGCGGGAGGAGGATATGTCGGAG
AGAGAGTGTGGGTGAGTGTTTGCATGTGTGTGTATGTGACGGGCGATGAA
GGTCGCACAAGCAGCTGAAGAAAATGCAATAGAAGAGGGGGGAAAGGAAA
AGGCATCAGACGGTAGTATTTGGTATGAAAAAGAAAGAGTAACAACAACA
CAGGACAAAACATAACTGAGGGTACCTGCGGAATAAGCGTCCGCCATTAC
CATGATGCCATGCCCTCCACCTCCAAAAAGGGAATATTAGGGTTGATTGA
CAGGACGTAAAATACGGGATATACAAGCTGTAGCCATGGATTGACGGCCT
TCTCGAAGGAGAAAAGGAAGGCACGCTAACCTCACATTCTTTCTCCCCTT
TCACATACCGTCCGTCGTTCTTCTTGCATTTCCTCGTCCTTCTCCCACCA
TAGCCCTCCCTCGCTAGCTATCCTTCCGAAGTTGCAATGTCACAAACTTG
CCGGCTTATCGCAGCTGCAACTGCTGCTGCTGCCGCCGGCTATTGTGGTG
GTGGAGGAGGGGACATTCCTTCCCACCTTTGCTGTCAGCAAATCAAGCAT
GAACCAAGGCGGTGGTAGGTGAGCCACCCTTGCGAGCGATGAACACCAAA
ACGAACCACACACAAAGTACAGGCTGGCCGTATGTATTTCTGCACTCACT
TCAAATTTCACGACAAACATTTACCGACACTCCATCCGTCCCCCCGTCCC
TCCCTCCCGCTCTTGTACATGCGGTCACATCTCTCTGTTTTCTTCCGGTC
GATTCTTTTTATTCTTTGAGTTATTTTTTGTGTAGACTTTGTACTCGAGG
TTTCTGTATCCTGGTCGTCCTCCTCCTTGTCAATTTCATCCTTTTCTAAG
TCGCGTTTCTTCAGGTATTTACCCTTCTTCTTCTACTATCATCTGCTTCC
ACCATGTCACACATTAACAACGCTATCCATCCTTTCCTCCCTCCCTCCCT
CCTTCAATGTGCATCCTGAAATAGCTTCAAAAAGAAGACGAAAGGCAAAC
GATATAAAAGATAGATTACAAGGCACTTATCGCCTCTTCCCCTATCTCCC
TTTCTCCACTTCTCCCTCCCTCCGCCCCTCACAACCAAGACCAAACCGAA
TTATATATGAAACCATCCCTTCCTCCTTCCCTACACACATGCCGTGCCCC
GCGGCATAAGATAATAATCAAACGGTGGCGGATCCGGCAAAAACACACTC
ACCGCTCCCCCTCCTCCTCCTGCCCCATCCCCCATCCCAGCCGCTGCAAC
AATATAGTTCTTACCTCCTCCTTTCCTCTCTCCTGCTCTACTCCCGGCAC
GTAGGGCACTCGAAGTCATAAGGGATAGCCCCCCTGTAGCTGCTGCTGGT
GCTGGCGCTCCTGCTGCTGCTAGAGGGTGGTGTGGATAATCCAACCTAAA
CGACTTCAACATTTGAGACGCTAGCCCAACCAAGGCATCTTCTTCTACTC
CTGTCAGAGAAGCGAGCTCCGGCCTCCAAGTCGGAGAGACGCCTAGGGCG
AGCCGTGCCAGGTACAGAAGGAGAGCAGCAACAAAGGAGGGAGGGTAGGG
AGCTAGTGAGGTGAACTCTTGGACGATCGCATACGAGGCAAAAAAGTGCG
CGTGTTTTCGAAGTTGGGCTGGGGCGATCTGCTGCTGCTGCTGTTGTTGT
TGCTTTTGGGCAATGTCTTCCTTGGTCAGC
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protein sequence of NO05G01060.1

>NO05G01060.1-protein ID=NO05G01060.1-protein|Name=NO05G01060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=134bp
MAPKQYTLDEVAGHNTEKDIWLIIGNEKTGGPKVYDVTKYLEEHPGGSEV
LLDHAGKYADEMFEDIGHSGDAKEKLKTLLVGELTPEDVEKLASEKVSRA
SELPSKGGLNPFAVVVLLVAIVLGLYLSKQYKQ*
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mRNA from alignment at chr5:313798..316645-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G01060.1 ID=NO05G01060.1|Name=NO05G01060.1|organism=Nannochloropsis oceanica|type=mRNA|length=2848bp|location=Sequence derived from alignment at chr5:313798..316645- (Nannochloropsis oceanica)
GTAACTTATCAATTTTATAGACACAATAAGCAAGGCGAGGTGTTCCTTGT TTGGATTCGTGCACCCTTTTTGTCCGCATACGTGGCTTACTGGTCACTCT CTGTCATCATCGGCTTCATCATTGCTTGCCCCCCTCTCGACACGGGAGCG CGACCCTCTTCATCAATCCAATCCCCACCTGTTACTCTGGTCTTACAATC TCTCTCCATACACCCCTTCATCTCAAACAGATAACTTCACCCGCACGCGC CACTCAGTAGCGTCATGGCCCCCAAGCAGTACACATTGGACGAGGTTGCG GGCCACAATACAGAGAAGGACATCTGGCTCATCATCGGAAACGAGAAGAC AGGTGCGTAATTTTACTTTTTATTCGACAGACAGGTTTGTCATGAACGAT GTACGTCCTGGAAATACCCCTTTTACGTACTCCTCAATGCTACCCTCCTG GCTTCCGGAAGCATCCATCGAATTGATCGCTTCCCCCACCCCCTTCCCCC CCTCCCTCCCCCCATACGAACATAGGCGGCCCCAAGGTGTACGATGTAAC CAAGTACCTAGAAGAACACCCGGGAGGGTCAGAGGTTCTGCTTGACCACG CCGGGAAGTACGCAGATGAGATGTTTGAGGACATTGGGCACTCGGGCGAT GCCAAGGAAAAGCTCAAGACGCTGTTGGTGGGCGAGTTGACGGTAAGTTA GGGAAAGAAGCGTTGGAGATAGGAAAACAGTATGTTGCAATTTGTTTCCA TGATTGTTTTTGTTCATGCAGACATGAGCAACCGCTAGTTCAACTTTCCG CCCTCTCTCCCTGCCCTCCACCCCCTTACACACCCAGCCCGAGGACGTGG AGAAGTTAGCCAGCGAGAAAGTGTCGCGGGCGTCCGAGTTGCCATCCAAG GGGGGTTTGAATCCCTTCGCCGTGGTGGTACTACTAGTAGCAATTGTCCT GGGTCTGTACTTGTCGAAGCAATACAAGCAGTAGAGAGGAGACGCTGGAG GGCAGGAGAGGGAGGGCTTGCTTGTTTCATTTTTGATGGTTTGACAGGGA GAAGGAAATGAGATGGTGGTAGAGATGAACATGCGTGCATGAAGGAGAAG GAATTGAAGGAGGGAGGGAGAGAGGGAGGAAGGGAGGGAGGGAGTAGCGG GAGGAGGATATGTCGGAGAGAGAGTGTGGGTGAGTGTTTGCATGTGTGTG TATGTGACGGGCGATGAAGGTCGCACAAGCAGCTGAAGAAAATGCAATAG AAGAGGGGGGAAAGGAAAAGGCATCAGACGGTAGTATTTGGTATGAAAAA GAAAGAGTAACAACAACACAGGACAAAACATAACTGAGGGTACCTGCGGA ATAAGCGTCCGCCATTACCATGATGCCATGCCCTCCACCTCCAAAAAGGG AATATTAGGGTTGATTGACAGGACGTAAAATACGGGATATACAAGCTGTA GCCATGGATTGACGGCCTTCTCGAAGGAGAAAAGGAAGGCACGCTAACCT CACATTCTTTCTCCCCTTTCACATACCGTCCGTCGTTCTTCTTGCATTTC CTCGTCCTTCTCCCACCATAGCCCTCCCTCGCTAGCTATCCTTCCGAAGT TGCAATGTCACAAACTTGCCGGCTTATCGCAGCTGCAACTGCTGCTGCTG CCGCCGGCTATTGTGGTGGTGGAGGAGGGGACATTCCTTCCCACCTTTGC TGTCAGCAAATCAAGCATGAACCAAGGCGGTGGTAGGTGAGCCACCCTTG CGAGCGATGAACACCAAAACGAACCACACACAAAGTACAGGCTGGCCGTA TGTATTTCTGCACTCACTTCAAATTTCACGACAAACATTTACCGACACTC CATCCGTCCCCCCGTCCCTCCCTCCCGCTCTTGTACATGCGGTCACATCT CTCTGTTTTCTTCCGGTCGATTCTTTTTATTCTTTGAGTTATTTTTTGTG TAGACTTTGTACTCGAGGTTTCTGTATCCTGGTCGTCCTCCTCCTTGTCA ATTTCATCCTTTTCTAAGTCGCGTTTCTTCAGGTATTTACCCTTCTTCTT CTACTATCATCTGCTTCCACCATGTCACACATTAACAACGCTATCCATCC TTTCCTCCCTCCCTCCCTCCTTCAATGTGCATCCTGAAATAGCTTCAAAA AGAAGACGAAAGGCAAACGATATAAAAGATAGATTACAAGGCACTTATCG CCTCTTCCCCTATCTCCCTTTCTCCACTTCTCCCTCCCTCCGCCCCTCAC AACCAAGACCAAACCGAATTATATATGAAACCATCCCTTCCTCCTTCCCT ACACACATGCCGTGCCCCGCGGCATAAGATAATAATCAAACGGTGGCGGA TCCGGCAAAAACACACTCACCGCTCCCCCTCCTCCTCCTGCCCCATCCCC CATCCCAGCCGCTGCAACAATATAGTTCTTACCTCCTCCTTTCCTCTCTC CTGCTCTACTCCCGGCACGTAGGGCACTCGAAGTCATAAGGGATAGCCCC CCTGTAGCTGCTGCTGGTGCTGGCGCTCCTGCTGCTGCTAGAGGGTGGTG TGGATAATCCAACCTAAACGACTTCAACATTTGAGACGCTAGCCCAACCA AGGCATCTTCTTCTACTCCTGTCAGAGAAGCGAGCTCCGGCCTCCAAGTC GGAGAGACGCCTAGGGCGAGCCGTGCCAGGTACAGAAGGAGAGCAGCAAC AAAGGAGGGAGGGTAGGGAGCTAGTGAGGTGAACTCTTGGACGATCGCAT ACGAGGCAAAAAAGTGCGCGTGTTTTCGAAGTTGGGCTGGGGCGATCTGC TGCTGCTGCTGTTGTTGTTGCTTTTGGGCAATGTCTTCCTTGGTCAGC
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Coding sequence (CDS) from alignment at chr5:313798..316645-

>NO05G01060.1 ID=NO05G01060.1|Name=NO05G01060.1|organism=Nannochloropsis oceanica|type=CDS|length=402bp|location=Sequence derived from alignment at chr5:313798..316645- (Nannochloropsis oceanica)
ATGGCCCCCAAGCAGTACACATTGGACGAGGTTGCGGGCCACAATACAGA
GAAGGACATCTGGCTCATCATCGGAAACGAGAAGACAGGCGGCCCCAAGG
TGTACGATGTAACCAAGTACCTAGAAGAACACCCGGGAGGGTCAGAGGTT
CTGCTTGACCACGCCGGGAAGTACGCAGATGAGATGTTTGAGGACATTGG
GCACTCGGGCGATGCCAAGGAAAAGCTCAAGACGCTGTTGGTGGGCGAGT
TGACGCCCGAGGACGTGGAGAAGTTAGCCAGCGAGAAAGTGTCGCGGGCG
TCCGAGTTGCCATCCAAGGGGGGTTTGAATCCCTTCGCCGTGGTGGTACT
ACTAGTAGCAATTGTCCTGGGTCTGTACTTGTCGAAGCAATACAAGCAGT
AG
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Synonyms
Publications