NO05G01020.1, NO05G01020.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G01020.1
Unique NameNO05G01020.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length837
Alignment locationchr5:300900..301896 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:300900..301896 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G01020.1 vs.
Match: EWM28275.1 (hypothetical protein Naga_100004g25 [Nannochloropsis gaditana])

HSP 1 Score: 327.4 bits (838), Expect = 4.300e-86
Identity = 177/273 (64.84%), Postives = 207/273 (75.82%), Query Frame = 0 
Query:   12 LLLAALPLGTTSGMVTYKLQHAFGLTATFQDRGSIDVLVDSGALTLIPPAENQPVLVPEGSLDEIAREMRQPDGGLYRLRAQRSDA-PAPVIMTSVHLCDLVRAGFRENITLTLDVDGRLLGLEYTPRMSRLSPTTCLAMKSPLD--------EVNRNTDGTRRDAVADRGPSAFSTLIKASVDQAGQSLPVFVPGQRPPMIQIRYDEQERRPEVEKSFLQKYWIFIVLAFLLLNSGAAPPEEGGAGGGAGGQVPPLQQGHGHGVPRDGGGGQ 276
            LLL+   L   S +VTYKLQHAFG+T  FQDRGS++VLVDSGALTLIPP E Q VLVPE SLDEIAREM+  +GG+YRLRAQ SD   +PV+MTSVHLCD+VRAGFRENITLTLDV+GRL+GLEYTPRMSRLSP+TC  +K PLD        EV R T G + D+V+   P AF T +KASVD +G+S+PV VPGQRPP+I IR ++Q  +PE  KSFLQKYWIFIVL FLLLN+GAAPP+EGG GG   GQ  P  +       R GGGG+
Sbjct:   49 LLLSLARLTGGSNLVTYKLQHAFGITGAFQDRGSVEVLVDSGALTLIPPPEEQRVLVPEASLDEIAREMKGFNGGMYRLRAQESDGVSSPVVMTSVHLCDVVRAGFRENITLTLDVEGRLIGLEYTPRMSRLSPSTCKNIKHPLDQYHARVAEEVGRRTPGDKEDSVSS--PPAFMTWVKASVDDSGKSVPVLVPGQRPPLIAIRQEDQGGQPEAPKSFLQKYWIFIVLFFLLLNTGAAPPDEGGTGGAQTGQGGPATR-------RGGGGGR 312
The following BLAST results are available for this feature:
BLAST of NO05G01020.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28275.14.300e-8664.84hypothetical protein Naga_100004g25 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G01020NO05G01020Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G01020.1NO05G01020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G01020.1.cds1NO05G01020.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G01020.1.cds2NO05G01020.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G01020.1 ID=NO05G01020.1|Name=NO05G01020.1|organism=Nannochloropsis oceanica|type=mRNA|length=837bp
ATGCCGCCCCCCCGCTTCATCCTCGCCCTTACCCTCCTCCTGGCGGCCCT
CCCTTTGGGCACCACGAGTGGCATGGTTACCTACAAGCTGCAGCATGCCT
TTGGACTCACAGCCACCTTCCAGGACCGGGGTAGCATTGATGTCTTAGTG
GACAGTGGGGCACTCACCCTCATTCCGCCTGCGGAAAACCAGCCCGTGCT
CGTGCCCGAGGGGTCCTTGGACGAGATAGCCCGTGAAATGAGGCAGCCCG
ACGGCGGGTTGTACCGTTTGCGGGCGCAGCGCAGCGATGCCCCAGCTCCT
GTGATCATGACGAGTGTCCATCTCTGCGACTTGGTCCGTGCGGGGTTCCG
GGAGAATATCACACTGACGCTTGATGTGGATGGACGGCTGTTGGGATTGG
AGTACACGCCGCGCATGAGCCGCTTGTCGCCCACGACATGCCTGGCAATG
AAATCCCCCTTGGACGAAGTCAATCGCAACACCGATGGAACGAGGAGAGA
TGCCGTAGCCGATAGGGGGCCTTCGGCATTCTCTACGCTAATTAAGGCAT
CTGTGGACCAGGCAGGGCAGAGTCTTCCGGTGTTTGTGCCCGGACAGAGG
CCCCCGATGATTCAAATTCGATACGACGAACAGGAACGAAGGCCGGAGGT
GGAGAAGAGTTTTTTACAAAAATATTGGATTTTTATCGTCTTGGCTTTCT
TACTTCTCAACTCAGGGGCAGCGCCACCGGAAGAAGGAGGAGCTGGAGGA
GGCGCGGGGGGTCAAGTACCACCTCTACAACAAGGACATGGGCATGGCGT
GCCCAGGGATGGTGGAGGAGGGCAAAAACGGGACTGA
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protein sequence of NO05G01020.1

>NO05G01020.1-protein ID=NO05G01020.1-protein|Name=NO05G01020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=279bp
MPPPRFILALTLLLAALPLGTTSGMVTYKLQHAFGLTATFQDRGSIDVLV
DSGALTLIPPAENQPVLVPEGSLDEIAREMRQPDGGLYRLRAQRSDAPAP
VIMTSVHLCDLVRAGFRENITLTLDVDGRLLGLEYTPRMSRLSPTTCLAM
KSPLDEVNRNTDGTRRDAVADRGPSAFSTLIKASVDQAGQSLPVFVPGQR
PPMIQIRYDEQERRPEVEKSFLQKYWIFIVLAFLLLNSGAAPPEEGGAGG
GAGGQVPPLQQGHGHGVPRDGGGGQKRD*
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mRNA from alignment at chr5:300900..301896-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G01020.1 ID=NO05G01020.1|Name=NO05G01020.1|organism=Nannochloropsis oceanica|type=mRNA|length=997bp|location=Sequence derived from alignment at chr5:300900..301896- (Nannochloropsis oceanica)
ATGCCGCCCCCCCGCTTCATCCTCGCCCTTACCCTCCTCCTGGCGGCCCT
CCCTTTGGGCACCACGAGTGGCATGGTTACCTACAAGCTGCAGCATGCCT
TTGGACTCACAGCCACCTTCCAGGACCGGGGTAGCATTGATGTCTTAGTG
GACAGTGGGGCACTCACCCTCATTCCGCCTGCGGAAAACCAGCCCGTGCT
CGTGCCCGAGGGGTCCTTGGACGAGATAGCCCGTGAAATGAGGCAGCCCG
ACGGCGGGTTGTACCGTTTGCGGGCGCAGCGCAGCGATGCCCCAGCTCCT
GTGATCATGACGAGTGTCCATCTCTGCGACTTGGTCCGTGCGGGGTTCCG
GGAGAATATCACACTGACGCTTGATGTGGATGGACGGCTGTTGGGATTGG
AGTACACGCCGCGCATGAGCCGCTTGTCGCCCACGACATGCCTGGCAATG
AAATCCCCCTTGGACGAAGTCAATCGCAACACCGATGGAACGAGGAGAGA
TGCCGTAGCCGATAGGGGGCCTTCGGCATTCTCTACGCTAATTAAGGCAT
CTGTGGACCAGGCAGGGCAGAGTCTTCCGGTGTTTGTGCCCGGACAGAGG
CCCCCGATGATTCAAATTCGATACGACGAACAGGAACGAAGGCCGGAGGT
GGAGAAGAGTTTTTTACAAAAATATGTAAGTTGAGACGGGAAGGGAAGGA
GGAAGGGATGGGCAACGAGAGTTGCCGGCACAGGCACAGTGGCATGGCAG
TCAACATATACAAGATCTTCCCCTTTTACCAATTTATTCTTACGTTTCTC
TCATTTTCTTTTTGTTCCATTTTGCACACAATAAGTGGATTTTTATCGTC
TTGGCTTTCTTACTTCTCAACTCAGGGGCAGCGCCACCGGAAGAAGGAGG
AGCTGGAGGAGGCGCGGGGGGTCAAGTACCACCTCTACAACAAGGACATG
GGCATGGCGTGCCCAGGGATGGTGGAGGAGGGCAAAAACGGGACTGA
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Coding sequence (CDS) from alignment at chr5:300900..301896-

>NO05G01020.1 ID=NO05G01020.1|Name=NO05G01020.1|organism=Nannochloropsis oceanica|type=CDS|length=837bp|location=Sequence derived from alignment at chr5:300900..301896- (Nannochloropsis oceanica)
ATGCCGCCCCCCCGCTTCATCCTCGCCCTTACCCTCCTCCTGGCGGCCCT
CCCTTTGGGCACCACGAGTGGCATGGTTACCTACAAGCTGCAGCATGCCT
TTGGACTCACAGCCACCTTCCAGGACCGGGGTAGCATTGATGTCTTAGTG
GACAGTGGGGCACTCACCCTCATTCCGCCTGCGGAAAACCAGCCCGTGCT
CGTGCCCGAGGGGTCCTTGGACGAGATAGCCCGTGAAATGAGGCAGCCCG
ACGGCGGGTTGTACCGTTTGCGGGCGCAGCGCAGCGATGCCCCAGCTCCT
GTGATCATGACGAGTGTCCATCTCTGCGACTTGGTCCGTGCGGGGTTCCG
GGAGAATATCACACTGACGCTTGATGTGGATGGACGGCTGTTGGGATTGG
AGTACACGCCGCGCATGAGCCGCTTGTCGCCCACGACATGCCTGGCAATG
AAATCCCCCTTGGACGAAGTCAATCGCAACACCGATGGAACGAGGAGAGA
TGCCGTAGCCGATAGGGGGCCTTCGGCATTCTCTACGCTAATTAAGGCAT
CTGTGGACCAGGCAGGGCAGAGTCTTCCGGTGTTTGTGCCCGGACAGAGG
CCCCCGATGATTCAAATTCGATACGACGAACAGGAACGAAGGCCGGAGGT
GGAGAAGAGTTTTTTACAAAAATATTGGATTTTTATCGTCTTGGCTTTCT
TACTTCTCAACTCAGGGGCAGCGCCACCGGAAGAAGGAGGAGCTGGAGGA
GGCGCGGGGGGTCAAGTACCACCTCTACAACAAGGACATGGGCATGGCGT
GCCCAGGGATGGTGGAGGAGGGCAAAAACGGGACTGA
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Synonyms
Publications