NO05G00990.1, NO05G00990.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G00990.1
Unique NameNO05G00990.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1033
Alignment locationchr5:297415..298447 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:297415..298447 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G00990.1 vs.
Match: XP_005853633.1 (hypothetical protein NGA_2085600, partial [Nannochloropsis gaditana CCMP526]; EKU22727.1 hypothetical protein NGA_2085600, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 242.7 bits (618), Expect = 9.000e-61
Identity = 130/175 (74.29%), Postives = 149/175 (85.14%), Query Frame = 0 
Query:    1 MMGILLLLALVATSATTTLGFIMPAAHPIASPVRTLVTAVAAAPSAVVVETFILPMGDDSRLKIRCESETFKDLALRVNALLASFRNIKAANAAEDKKGPAPREPSLEFLTKNFETHLEMECNPNIYPDAFHATVFVKVKNEVLEVTSQCQLSALVDALKLYKQTYKIKMEASNA 176
            M  +L LLA +AT+A +T+ F++PA H + S V+T   AV  A  AVVVETFILPMGDDSRLKIRC+ ETFKDLALRVNALLASFR IKAANAAEDK GPAPREPSLEFL  +FET LEMECNPNIYPDAFHA VFVKV+N+VLEVTSQCQLSALVDALKLYK TYK++++A+ +
Sbjct:   10 MRSVLFLLA-IATAARSTVSFVLPAKHQV-SHVQTSAAAVVGASPAVVVETFILPMGDDSRLKIRCKPETFKDLALRVNALLASFRAIKAANAAEDKTGPAPREPSLEFLVTDFETRLEMECNPNIYPDAFHAAVFVKVQNDVLEVTSQCQLSALVDALKLYKSTYKVELDANKS 182
The following BLAST results are available for this feature:
BLAST of NO05G00990.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853633.19.000e-6174.29hypothetical protein NGA_2085600, partial [Nannoch... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G00990NO05G00990Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G00990.1NO05G00990.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G00990.1.cds1NO05G00990.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G00990.1 ID=NO05G00990.1|Name=NO05G00990.1|organism=Nannochloropsis oceanica|type=mRNA|length=1033bp
CTTCATTCCTACTCTCTCGACCCTTCTTGTAAAAGTTCGAGCGTGCTTCA
GTCAACCAACCCCCGCACAGGAGCTGTCTTGTCGTTATTTATTCCACTTT
TTCCTCCTTGCTTCTGACTTCATGCCACGCTCGCGCTTGCACCGCACGCA
TCCCCGTGAGAAACGACGGCAACATCAACAACCGCAGGATACACTGCCGT
CGTGCTCGTGTTTGTTCCGTGCACAGGCAAATCAGGAAGAACGCACGTCA
GACACGCATTGATCCCATTTAAGCACCATTCTTACAATGCTCTTGCTCGC
TTTCTCTTCCTGTTCCACTCCCTGGCTCACGTAAATCGCCTTTCCTCCAC
TATCCACCACACGCACAGACCTCCTCCCTCCCTCCTCTCTTCAAGCCAAG
CATGATGGGCATTCTCCTCCTCCTCGCATTGGTCGCCACAAGCGCAACCA
CCACCCTGGGCTTCATAATGCCTGCTGCACATCCCATAGCCTCACCCGTC
CGCACGCTCGTCACCGCCGTCGCTGCCGCCCCCAGTGCGGTGGTAGTGGA
GACGTTCATATTGCCCATGGGTGACGACTCACGCTTGAAAATCCGCTGCG
AGTCAGAAACTTTCAAAGACCTGGCTTTACGCGTGAATGCACTATTGGCT
TCTTTCCGCAATATTAAGGCCGCCAATGCAGCAGAGGACAAGAAGGGACC
AGCACCTCGCGAGCCGTCTTTGGAATTCTTGACGAAGAACTTTGAGACGC
ATTTGGAGATGGAATGCAACCCCAATATTTACCCCGATGCGTTCCATGCG
ACGGTATTTGTGAAGGTCAAAAATGAAGTGTTGGAGGTTACGTCGCAGTG
TCAGTTGAGTGCGTTAGTGGATGCTTTAAAGCTCTACAAGCAGACTTACA
AGATCAAGATGGAGGCGAGCAATGCAGAGCCGAGCAACTAGGCCAGCAAG
TCGAGGAATGGGACATATGTGGGTCAGTGATATGCAGAATTGGAAATTAT
GGGACTTTGGAAGAAAAATACGTGAACTGATTA
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protein sequence of NO05G00990.1

>NO05G00990.1-protein ID=NO05G00990.1-protein|Name=NO05G00990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=180bp
MMGILLLLALVATSATTTLGFIMPAAHPIASPVRTLVTAVAAAPSAVVVE
TFILPMGDDSRLKIRCESETFKDLALRVNALLASFRNIKAANAAEDKKGP
APREPSLEFLTKNFETHLEMECNPNIYPDAFHATVFVKVKNEVLEVTSQC
QLSALVDALKLYKQTYKIKMEASNAEPSN*
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mRNA from alignment at chr5:297415..298447-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G00990.1 ID=NO05G00990.1|Name=NO05G00990.1|organism=Nannochloropsis oceanica|type=mRNA|length=1033bp|location=Sequence derived from alignment at chr5:297415..298447- (Nannochloropsis oceanica)
CTTCATTCCTACTCTCTCGACCCTTCTTGTAAAAGTTCGAGCGTGCTTCA
GTCAACCAACCCCCGCACAGGAGCTGTCTTGTCGTTATTTATTCCACTTT
TTCCTCCTTGCTTCTGACTTCATGCCACGCTCGCGCTTGCACCGCACGCA
TCCCCGTGAGAAACGACGGCAACATCAACAACCGCAGGATACACTGCCGT
CGTGCTCGTGTTTGTTCCGTGCACAGGCAAATCAGGAAGAACGCACGTCA
GACACGCATTGATCCCATTTAAGCACCATTCTTACAATGCTCTTGCTCGC
TTTCTCTTCCTGTTCCACTCCCTGGCTCACGTAAATCGCCTTTCCTCCAC
TATCCACCACACGCACAGACCTCCTCCCTCCCTCCTCTCTTCAAGCCAAG
CATGATGGGCATTCTCCTCCTCCTCGCATTGGTCGCCACAAGCGCAACCA
CCACCCTGGGCTTCATAATGCCTGCTGCACATCCCATAGCCTCACCCGTC
CGCACGCTCGTCACCGCCGTCGCTGCCGCCCCCAGTGCGGTGGTAGTGGA
GACGTTCATATTGCCCATGGGTGACGACTCACGCTTGAAAATCCGCTGCG
AGTCAGAAACTTTCAAAGACCTGGCTTTACGCGTGAATGCACTATTGGCT
TCTTTCCGCAATATTAAGGCCGCCAATGCAGCAGAGGACAAGAAGGGACC
AGCACCTCGCGAGCCGTCTTTGGAATTCTTGACGAAGAACTTTGAGACGC
ATTTGGAGATGGAATGCAACCCCAATATTTACCCCGATGCGTTCCATGCG
ACGGTATTTGTGAAGGTCAAAAATGAAGTGTTGGAGGTTACGTCGCAGTG
TCAGTTGAGTGCGTTAGTGGATGCTTTAAAGCTCTACAAGCAGACTTACA
AGATCAAGATGGAGGCGAGCAATGCAGAGCCGAGCAACTAGGCCAGCAAG
TCGAGGAATGGGACATATGTGGGTCAGTGATATGCAGAATTGGAAATTAT
GGGACTTTGGAAGAAAAATACGTGAACTGATTA
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Coding sequence (CDS) from alignment at chr5:297415..298447-

>NO05G00990.1 ID=NO05G00990.1|Name=NO05G00990.1|organism=Nannochloropsis oceanica|type=CDS|length=540bp|location=Sequence derived from alignment at chr5:297415..298447- (Nannochloropsis oceanica)
ATGATGGGCATTCTCCTCCTCCTCGCATTGGTCGCCACAAGCGCAACCAC
CACCCTGGGCTTCATAATGCCTGCTGCACATCCCATAGCCTCACCCGTCC
GCACGCTCGTCACCGCCGTCGCTGCCGCCCCCAGTGCGGTGGTAGTGGAG
ACGTTCATATTGCCCATGGGTGACGACTCACGCTTGAAAATCCGCTGCGA
GTCAGAAACTTTCAAAGACCTGGCTTTACGCGTGAATGCACTATTGGCTT
CTTTCCGCAATATTAAGGCCGCCAATGCAGCAGAGGACAAGAAGGGACCA
GCACCTCGCGAGCCGTCTTTGGAATTCTTGACGAAGAACTTTGAGACGCA
TTTGGAGATGGAATGCAACCCCAATATTTACCCCGATGCGTTCCATGCGA
CGGTATTTGTGAAGGTCAAAAATGAAGTGTTGGAGGTTACGTCGCAGTGT
CAGTTGAGTGCGTTAGTGGATGCTTTAAAGCTCTACAAGCAGACTTACAA
GATCAAGATGGAGGCGAGCAATGCAGAGCCGAGCAACTAG
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Synonyms
Publications