NO05G00980.1, NO05G00980.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G00980.1
Unique NameNO05G00980.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1437
Alignment locationchr5:295944..297380 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:295944..297380 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G00980.1 vs.
Match: EWM28246.1 (hypothetical protein Naga_100004g7 [Nannochloropsis gaditana])

HSP 1 Score: 401.7 bits (1031), Expect = 2.000e-108
Identity = 204/299 (68.23%), Postives = 237/299 (79.26%), Query Frame = 0 
Query:   14 LLLIILVLPATLVHSFVTSTNRAPAGYNPPRATVRMMATATQHVVVGKGRVGEALAKMLGPKAIMVGRTDPVPSEGTGPIYIATRNDDLAAVIEKTPPNRRKDLVFMQNGMLGTFLERSALQDNTQVLVYFAVAKKGEAPTDGVTDLNPEGLTAAHGEWANDLAATLRAAGLSCHVLEKEPFRAAMFEKLIWISSFMLVGAAHGGITVGEVEQSHRPQVVALIKELKSAVEE-LDVTFKEGVEDRLCAYTRSVAHFPTAIKEFQWRNGFFWDISQAAAKAGKADPCATHSAMLQQLGVV 312
            ++L IL LPA  V  FV   +  P+      +TV M AT TQHVVVGKGRVGEAL KMLG   +MVGR DPVP EGTGPIY+ATRNDDLAAV+EKTP  RRKDLVF+QNGMLG FL+   L+DNTQ LVYFAVA+KG+ PTDGVTDLNP GLTA +GEWA D   TL  AGL CH+L+K  F+AAMFEKL+WIS+FMLVG+ HGGITVGEVE+SHR  VVALI+ELK A+E    VTF++GVEDRLCAY RSVAHFPTA+KEF WRNGFFW +S+ A   G+ADPC +HSAML+Q+G +
Sbjct:    8 VILFILQLPA-FVQGFVIPRSWVPS-CKARESTVLMTAT-TQHVVVGKGRVGEALGKMLGSSTVMVGRNDPVPIEGTGPIYVATRNDDLAAVVEKTPEARRKDLVFLQNGMLGPFLKTYGLEDNTQALVYFAVARKGDVPTDGVTDLNPNGLTAVYGEWATDFEETLTKAGLKCHILDKGRFQAAMFEKLMWISAFMLVGSVHGGITVGEVEKSHREDVVALIQELKKALERHAKVTFQDGVEDRLCAYARSVAHFPTAVKEFPWRNGFFWKLSEEAVGRGEADPCPSHSAMLKQVGAL 303
The following BLAST results are available for this feature:
BLAST of NO05G00980.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28246.12.000e-10868.23hypothetical protein Naga_100004g7 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G00980NO05G00980Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G00980.1NO05G00980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G00980.1.cds1NO05G00980.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G00980.1 ID=NO05G00980.1|Name=NO05G00980.1|organism=Nannochloropsis oceanica|type=mRNA|length=1437bp
GGCGTTGGTCGATGTTCTCGGTAGCTCGTTTTACCCCTTAAAGCCTGACC
ATTGACTCAAAAACCTATAACTTGTTAGCACAAGAATTGTGAATATGCAC
ATTTTTTTATTCGATGTTTATTTTTTTGTCCACGTATACGACAAAAGCCA
CCGTTTTCAGGCACCCGGACCGAGGGTACCTGGAACTCAATTCCCTTCCC
GGAAAAAGCACCCACGTACAATGCATGCGAACACCCCATGGCCCCCTTTA
TACATACCAGTGCGTGTCGCTGTAACGAATCTCGTTCATGCCATGGTTTT
GAAGTGTATTGCATGCTCTCCTCTTACTACAGCCAACCTCCCCATCCACC
TCTTCCCCTAACCCGACCCAAGCACAGGAAAGCACGCAAGCATGCGTGCT
GCCCTGTCCTCGTCGTCGACCACGATTGTGCTGCTCCTCATCATCCTCGT
ACTACCCGCCACCCTCGTCCACAGCTTTGTCACCTCCACAAACCGTGCGC
CTGCAGGTTACAACCCCCCAAGAGCAACCGTCCGGATGATGGCAACCGCT
ACACAGCACGTCGTTGTCGGCAAAGGTCGAGTGGGGGAAGCTTTGGCAAA
AATGCTCGGGCCTAAGGCCATCATGGTAGGGCGGACAGACCCTGTCCCTT
CGGAAGGTACGGGCCCTATCTACATCGCCACACGGAACGACGACCTTGCC
GCCGTCATCGAAAAGACACCCCCCAATCGTCGCAAGGACCTTGTATTCAT
GCAAAACGGGATGCTAGGCACTTTCCTCGAAAGGTCTGCCCTTCAGGATA
ACACACAAGTTCTCGTGTACTTTGCTGTGGCCAAAAAGGGGGAGGCGCCG
ACGGACGGCGTCACTGACCTTAACCCTGAAGGGCTGACCGCGGCTCATGG
AGAGTGGGCAAATGACCTAGCAGCGACGCTCAGAGCCGCAGGGTTAAGCT
GTCACGTTTTAGAGAAAGAACCGTTTCGGGCGGCCATGTTTGAGAAGCTC
ATTTGGATATCATCGTTTATGTTGGTTGGTGCTGCGCACGGAGGGATTAC
GGTGGGGGAGGTGGAGCAGAGTCATCGACCACAAGTTGTGGCGCTCATCA
AGGAGCTGAAAAGTGCAGTGGAAGAATTAGATGTGACCTTCAAGGAAGGA
GTCGAAGATCGCTTGTGTGCATACACACGATCTGTGGCGCATTTCCCGAC
GGCGATCAAGGAGTTTCAATGGCGGAATGGTTTCTTTTGGGACATTTCAC
AGGCCGCAGCCAAGGCCGGGAAGGCTGATCCGTGTGCGACGCACTCGGCA
ATGCTCCAGCAATTAGGAGTGGTTTAGAGCTGATTATAATGAAGAGGACA
TAGGACTGAGATTTGAGGAGTTTGAAGGAGATCGGAGATGGCAAGTAAAG
AATTGAAATGAGCGTAGCTGTGTTCTCATCCCGAGCA
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protein sequence of NO05G00980.1

>NO05G00980.1-protein ID=NO05G00980.1-protein|Name=NO05G00980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=312bp
MRAALSSSSTTIVLLLIILVLPATLVHSFVTSTNRAPAGYNPPRATVRMM
ATATQHVVVGKGRVGEALAKMLGPKAIMVGRTDPVPSEGTGPIYIATRND
DLAAVIEKTPPNRRKDLVFMQNGMLGTFLERSALQDNTQVLVYFAVAKKG
EAPTDGVTDLNPEGLTAAHGEWANDLAATLRAAGLSCHVLEKEPFRAAMF
EKLIWISSFMLVGAAHGGITVGEVEQSHRPQVVALIKELKSAVEELDVTF
KEGVEDRLCAYTRSVAHFPTAIKEFQWRNGFFWDISQAAAKAGKADPCAT
HSAMLQQLGVV*
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mRNA from alignment at chr5:295944..297380-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G00980.1 ID=NO05G00980.1|Name=NO05G00980.1|organism=Nannochloropsis oceanica|type=mRNA|length=1437bp|location=Sequence derived from alignment at chr5:295944..297380- (Nannochloropsis oceanica)
GGCGTTGGTCGATGTTCTCGGTAGCTCGTTTTACCCCTTAAAGCCTGACC
ATTGACTCAAAAACCTATAACTTGTTAGCACAAGAATTGTGAATATGCAC
ATTTTTTTATTCGATGTTTATTTTTTTGTCCACGTATACGACAAAAGCCA
CCGTTTTCAGGCACCCGGACCGAGGGTACCTGGAACTCAATTCCCTTCCC
GGAAAAAGCACCCACGTACAATGCATGCGAACACCCCATGGCCCCCTTTA
TACATACCAGTGCGTGTCGCTGTAACGAATCTCGTTCATGCCATGGTTTT
GAAGTGTATTGCATGCTCTCCTCTTACTACAGCCAACCTCCCCATCCACC
TCTTCCCCTAACCCGACCCAAGCACAGGAAAGCACGCAAGCATGCGTGCT
GCCCTGTCCTCGTCGTCGACCACGATTGTGCTGCTCCTCATCATCCTCGT
ACTACCCGCCACCCTCGTCCACAGCTTTGTCACCTCCACAAACCGTGCGC
CTGCAGGTTACAACCCCCCAAGAGCAACCGTCCGGATGATGGCAACCGCT
ACACAGCACGTCGTTGTCGGCAAAGGTCGAGTGGGGGAAGCTTTGGCAAA
AATGCTCGGGCCTAAGGCCATCATGGTAGGGCGGACAGACCCTGTCCCTT
CGGAAGGTACGGGCCCTATCTACATCGCCACACGGAACGACGACCTTGCC
GCCGTCATCGAAAAGACACCCCCCAATCGTCGCAAGGACCTTGTATTCAT
GCAAAACGGGATGCTAGGCACTTTCCTCGAAAGGTCTGCCCTTCAGGATA
ACACACAAGTTCTCGTGTACTTTGCTGTGGCCAAAAAGGGGGAGGCGCCG
ACGGACGGCGTCACTGACCTTAACCCTGAAGGGCTGACCGCGGCTCATGG
AGAGTGGGCAAATGACCTAGCAGCGACGCTCAGAGCCGCAGGGTTAAGCT
GTCACGTTTTAGAGAAAGAACCGTTTCGGGCGGCCATGTTTGAGAAGCTC
ATTTGGATATCATCGTTTATGTTGGTTGGTGCTGCGCACGGAGGGATTAC
GGTGGGGGAGGTGGAGCAGAGTCATCGACCACAAGTTGTGGCGCTCATCA
AGGAGCTGAAAAGTGCAGTGGAAGAATTAGATGTGACCTTCAAGGAAGGA
GTCGAAGATCGCTTGTGTGCATACACACGATCTGTGGCGCATTTCCCGAC
GGCGATCAAGGAGTTTCAATGGCGGAATGGTTTCTTTTGGGACATTTCAC
AGGCCGCAGCCAAGGCCGGGAAGGCTGATCCGTGTGCGACGCACTCGGCA
ATGCTCCAGCAATTAGGAGTGGTTTAGAGCTGATTATAATGAAGAGGACA
TAGGACTGAGATTTGAGGAGTTTGAAGGAGATCGGAGATGGCAAGTAAAG
AATTGAAATGAGCGTAGCTGTGTTCTCATCCCGAGCA
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Coding sequence (CDS) from alignment at chr5:295944..297380-

>NO05G00980.1 ID=NO05G00980.1|Name=NO05G00980.1|organism=Nannochloropsis oceanica|type=CDS|length=936bp|location=Sequence derived from alignment at chr5:295944..297380- (Nannochloropsis oceanica)
ATGCGTGCTGCCCTGTCCTCGTCGTCGACCACGATTGTGCTGCTCCTCAT
CATCCTCGTACTACCCGCCACCCTCGTCCACAGCTTTGTCACCTCCACAA
ACCGTGCGCCTGCAGGTTACAACCCCCCAAGAGCAACCGTCCGGATGATG
GCAACCGCTACACAGCACGTCGTTGTCGGCAAAGGTCGAGTGGGGGAAGC
TTTGGCAAAAATGCTCGGGCCTAAGGCCATCATGGTAGGGCGGACAGACC
CTGTCCCTTCGGAAGGTACGGGCCCTATCTACATCGCCACACGGAACGAC
GACCTTGCCGCCGTCATCGAAAAGACACCCCCCAATCGTCGCAAGGACCT
TGTATTCATGCAAAACGGGATGCTAGGCACTTTCCTCGAAAGGTCTGCCC
TTCAGGATAACACACAAGTTCTCGTGTACTTTGCTGTGGCCAAAAAGGGG
GAGGCGCCGACGGACGGCGTCACTGACCTTAACCCTGAAGGGCTGACCGC
GGCTCATGGAGAGTGGGCAAATGACCTAGCAGCGACGCTCAGAGCCGCAG
GGTTAAGCTGTCACGTTTTAGAGAAAGAACCGTTTCGGGCGGCCATGTTT
GAGAAGCTCATTTGGATATCATCGTTTATGTTGGTTGGTGCTGCGCACGG
AGGGATTACGGTGGGGGAGGTGGAGCAGAGTCATCGACCACAAGTTGTGG
CGCTCATCAAGGAGCTGAAAAGTGCAGTGGAAGAATTAGATGTGACCTTC
AAGGAAGGAGTCGAAGATCGCTTGTGTGCATACACACGATCTGTGGCGCA
TTTCCCGACGGCGATCAAGGAGTTTCAATGGCGGAATGGTTTCTTTTGGG
ACATTTCACAGGCCGCAGCCAAGGCCGGGAAGGCTGATCCGTGTGCGACG
CACTCGGCAATGCTCCAGCAATTAGGAGTGGTTTAG
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Synonyms
Publications