NO05G00970.2, NO05G00970.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G00970.2
Unique NameNO05G00970.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1893
Alignment locationchr5:293882..295943 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:293882..295943 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO05G00970.2 vs.
Match: EWM28154.1 (beta-ketoacyl synthase [Nannochloropsis gaditana])

HSP 1 Score: 609.0 bits (1569), Expect = 1.100e-170
Identity = 308/408 (75.49%), Postives = 352/408 (86.27%), Query Frame = 0 
Query:    1 MAVARRGVVVTGIGIVSPLGVGTKATWDALLAGRIGVRALDAEKDNILKLANMPSRIAAPVDQSLILPPPGEEGNWSRLSPFIRYAMLAADEALDHAQWHPSTPTEKERSGVYIGTGIGCLDEIVEANRIIHSGGGVRRLSPHFVPKILGNLATGNVSIRHGLQGPNHASITACASGAHAVGDAFRMIQFGDADVVVAGGTEACINAISLGGFSRLRALSTKYNDAPRQASRPFDSGRDGFVIGEGAAVLVLEEKAHARARGAKALAEVIGYGMAGDAHHITAPSPDGGGAFRAMRSALKNAGVAGRKGEGGSEGVRMGEVDYVNAHATSTPVGDTIEGNAIQRLLVEHRKEKGERSDTESYQKKQMYVSSTKGATGHLLGAAGALEAAFTVLALRDGVVPGTANLER 409
            M++ RR VVV+GIGI+SPLG+G KATWDALLAGRIGVRALDAEKD I +L  +P+RIAA VDQ+ + PPPGEEGNW RLSPFIRYA+LAA+EAL HAQWHP T  +KER+GVYIGTGIGCL+EIVEA R++ SGGG+RR+SPHFVPKILGNLATGNVSIRHGLQGPNHASITACASGAHA+GDAFR++Q+GDADV+VAGGTEACINA+ LGGFSRLRALST+YND P +ASRPFD+ RDGFV+GEGAAVLVLEE+ HA ARG K LAE++GYGMAGDAHHITAPSPDGGGAFRAMR+AL +A   G        GVR+ EV +VNAHATSTPVGD IEG A+QRL  EH ++    +     +  +M VS+TKGATGHLLGAAGALE+AFTVLALRDGVVPGTANLER
Sbjct:    1 MSLVRRRVVVSGIGIISPLGIGRKATWDALLAGRIGVRALDAEKDKIPELPALPARIAATVDQAQVRPPPGEEGNWPRLSPFIRYALLAAEEALHHAQWHPRTSHDKERTGVYIGTGIGCLEEIVEAQRVMASGGGIRRVSPHFVPKILGNLATGNVSIRHGLQGPNHASITACASGAHAIGDAFRLVQYGDADVMVAGGTEACINALCLGGFSRLRALSTRYNDEPERASRPFDADRDGFVVGEGAAVLVLEEREHALARGVKPLAEIVGYGMAGDAHHITAPSPDGGGAFRAMRAALGSAKEVG--------GVRLWEVGHVNAHATSTPVGDVIEGQALQRLWEEHCRQDKRGAG----RNARMDVSATKGATGHLLGAAGALESAFTVLALRDGVVPGTANLER 396
The following BLAST results are available for this feature:
BLAST of NO05G00970.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28154.11.100e-17075.49beta-ketoacyl synthase [Nannochloropsis gaditana][more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G00970NO05G00970Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G00970.2NO05G00970.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G00970.2.cds1NO05G00970.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00970.2.cds2NO05G00970.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G00970.2 ID=NO05G00970.2|Name=NO05G00970.2|organism=Nannochloropsis oceanica|type=mRNA|length=1893bp
TCCAGAGGGAAGATTGCTTTGGGGGGGTTCTTCTTCCCATGACCGCGTCT
AGAGACCTGCTTTGCGCAACATTTGCGTTCATCAGAATAAGAATGAGTTT
GATGTGTAACCAATTTCATGCTGTAGTCAAAATCGATGGAAACGTATGTA
AATGAGATGAGGTTTAAAAAGTTTTTAAGTTTAACCTCCTGTCTCATTTT
CTCAATTCCACCCTCCCCACACTCATTCTATCCAAGATTTGTCACACGTG
CCTAAAACAGGCCAAAATCACACACCAAAAAGCATGGCAGTGGCACGGCG
AGGGGTGGTGGTCACAGGAATCGGGATTGTCAGCCCTTTGGGCGTGGGCA
CCAAGGCAACCTGGGATGCCCTCTTGGCGGGGCGCATTGGGGTGCGGGCT
TTGGATGCCGAGAAGGATAATATTCTCAAGCTGGCGAATATGCCTTCGCG
GATAGCTGCCCCTGTCGACCAATCCCTAATCCTTCCTCCACCCGGGGAGG
AAGGCAACTGGTCTCGTCTCTCCCCCTTCATCCGCTATGCTATGCTTGCC
GCCGACGAAGCCTTGGACCACGCCCAGTGGCATCCCTCCACCCCCACCGA
AAAAGAACGCAGCGGTGTTTATATCGGAACGGGCATCGGGTGTCTAGATG
AAATTGTGGAGGCGAACCGCATCATCCATTCAGGAGGGGGGGTCCGTCGT
CTGAGTCCTCATTTCGTCCCCAAAATTCTTGGCAATCTCGCAACTGGTAA
TGTCAGCATCAGACATGGACTGCAGGGGCCCAATCACGCATCCATCACAG
CGTGTGCCAGTGGAGCACATGCAGTGGGGGATGCCTTTCGGATGATTCAA
TTTGGGGATGCAGATGTGGTGGTGGCGGGTGGGACAGAGGCATGCATAAA
TGCCATTTCCCTTGGAGGCTTCTCCCGCCTTCGGGCATTGAGCACAAAGT
ACAACGATGCGCCTCGCCAAGCTTCGCGGCCATTCGATTCGGGAAGAGAC
GGTTTTGTGATTGGAGAGGGTGCAGCGGTATTGGTTTTGGAGGAGAAGGC
GCACGCACGAGCGAGGGGGGCGAAGGCCTTGGCGGAAGTGATAGGCTACG
GCATGGCCGGTGACGCTCACCATATTACTGCTCCTTCTCCTGATGGGGGG
GGCGCGTTTAGAGCTATGCGTTCCGCGTTGAAAAATGCAGGTGTGGCGGG
GAGGAAGGGAGAAGGAGGGAGTGAGGGGGTGAGAATGGGAGAGGTGGATT
ATGTGAACGCTCACGCAACGTCGACGCCGGTGGGGGACACGATTGAGGGA
AATGCGATTCAGCGCCTGCTTGTCGAGCATAGGAAGGAGAAGGGGGAGCG
GTCAGATACGGAGAGCTATCAGAAGAAGCAGATGTATGTCTCGTCGACCA
AGGGGGCAACGGGTCATTTGCTCGGAGCAGCGGGGGCGTTGGAGGCTGCG
TTTACGGTTTTGGCACTGCGGGATGGCGTGGTGCCGGGGACTGCAAATTT
GGAGAGGTGCGTGTTACGTGGCGAAACAAATTGAGAGAAAGAAGCGAAAG
ATTTTCTCATTCGGGATGGACGCATCTCACTTTTACGCACGTCCGATTTC
GGTGCACACATCCCTCAAACATTTTGCACACCCATACACACACAGCCCTG
ACCCCGCGGCGAAGACGTGGGATTTTGAGCTCGTGGGTCAGCAGCTGCAG
CAGAATCCACAAGGCAGCCACATGTCCTTGCCGGGGATGGAGCTCGCCCT
GTCGAACTCATTTGGCTTCGGTGGCGTGAACGTCTCGTTGCTCTTTCGCC
GTTGTACATAGATAAAGAGGGCTAGATTATGTCGGAATGGGATCAAGTAT
TGGTGAAAGAAGGAGAAGAAACTAGACCAACTTTCGGACGGAG
back to top

protein sequence of NO05G00970.2

>NO05G00970.2-protein ID=NO05G00970.2-protein|Name=NO05G00970.2|organism=Nannochloropsis oceanica|type=polypeptide|length=417bp
MAVARRGVVVTGIGIVSPLGVGTKATWDALLAGRIGVRALDAEKDNILKL
ANMPSRIAAPVDQSLILPPPGEEGNWSRLSPFIRYAMLAADEALDHAQWH
PSTPTEKERSGVYIGTGIGCLDEIVEANRIIHSGGGVRRLSPHFVPKILG
NLATGNVSIRHGLQGPNHASITACASGAHAVGDAFRMIQFGDADVVVAGG
TEACINAISLGGFSRLRALSTKYNDAPRQASRPFDSGRDGFVIGEGAAVL
VLEEKAHARARGAKALAEVIGYGMAGDAHHITAPSPDGGGAFRAMRSALK
NAGVAGRKGEGGSEGVRMGEVDYVNAHATSTPVGDTIEGNAIQRLLVEHR
KEKGERSDTESYQKKQMYVSSTKGATGHLLGAAGALEAAFTVLALRDGVV
PGTANLERCVLRGETN*
back to top

mRNA from alignment at chr5:293882..295943+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G00970.2 ID=NO05G00970.2|Name=NO05G00970.2|organism=Nannochloropsis oceanica|type=mRNA|length=2062bp|location=Sequence derived from alignment at chr5:293882..295943+ (Nannochloropsis oceanica)
TCCAGAGGGAAGATTGCTTTGGGGGGGTTCTTCTTCCCATGACCGCGTCT
AGAGACCTGCTTTGCGCAACATTTGCGTTCATCAGAATAAGAATGAGTTT
GATGTGTAACCAATTTCATGCTGTAGTCAAAATCGATGGAAACGTATGTA
AATGAGATGAGGTTTAAAAAGTTTTTAAGTTTAACCTCCTGTCTCATTTT
CTCAATTCCACCCTCCCCACACTCATTCTATCCAAGATTTGTCACACGTG
CCTAAAACAGGCCAAAATCACACACCAAAAAGCATGGCAGTGGCACGGCG
AGGGGTGGTGGTCACAGGAATCGGGATTGTCAGCCCTTTGGGCGTGGGCA
CCAAGGCAACCTGGGATGCCCTCTTGGCGGGGCGCATTGGGGTGCGGGCT
TTGGATGCCGAGAAGGATAATATTCTCAAGCTGGCGAATATGCCTTCGCG
GGTGCGTGCTGTGTCAATGTATGACAACGTACATGGGCTGTGGTGGGTGA
AATCTGAGTAAGGGTGATGAATCAAAGTGCGAGCCTTTCTAGCTTCCCTA
TGCTGCCAGTCACACCATTCGTAAGCTCACATAATTCTTGTTCACCAATC
TGTTGTCCCCCGTATTTCAGATAGCTGCCCCTGTCGACCAATCCCTAATC
CTTCCTCCACCCGGGGAGGAAGGCAACTGGTCTCGTCTCTCCCCCTTCAT
CCGCTATGCTATGCTTGCCGCCGACGAAGCCTTGGACCACGCCCAGTGGC
ATCCCTCCACCCCCACCGAAAAAGAACGCAGCGGTGTTTATATCGGAACG
GGCATCGGGTGTCTAGATGAAATTGTGGAGGCGAACCGCATCATCCATTC
AGGAGGGGGGGTCCGTCGTCTGAGTCCTCATTTCGTCCCCAAAATTCTTG
GCAATCTCGCAACTGGTAATGTCAGCATCAGACATGGACTGCAGGGGCCC
AATCACGCATCCATCACAGCGTGTGCCAGTGGAGCACATGCAGTGGGGGA
TGCCTTTCGGATGATTCAATTTGGGGATGCAGATGTGGTGGTGGCGGGTG
GGACAGAGGCATGCATAAATGCCATTTCCCTTGGAGGCTTCTCCCGCCTT
CGGGCATTGAGCACAAAGTACAACGATGCGCCTCGCCAAGCTTCGCGGCC
ATTCGATTCGGGAAGAGACGGTTTTGTGATTGGAGAGGGTGCAGCGGTAT
TGGTTTTGGAGGAGAAGGCGCACGCACGAGCGAGGGGGGCGAAGGCCTTG
GCGGAAGTGATAGGCTACGGCATGGCCGGTGACGCTCACCATATTACTGC
TCCTTCTCCTGATGGGGGGGGCGCGTTTAGAGCTATGCGTTCCGCGTTGA
AAAATGCAGGTGTGGCGGGGAGGAAGGGAGAAGGAGGGAGTGAGGGGGTG
AGAATGGGAGAGGTGGATTATGTGAACGCTCACGCAACGTCGACGCCGGT
GGGGGACACGATTGAGGGAAATGCGATTCAGCGCCTGCTTGTCGAGCATA
GGAAGGAGAAGGGGGAGCGGTCAGATACGGAGAGCTATCAGAAGAAGCAG
ATGTATGTCTCGTCGACCAAGGGGGCAACGGGTCATTTGCTCGGAGCAGC
GGGGGCGTTGGAGGCTGCGTTTACGGTTTTGGCACTGCGGGATGGCGTGG
TGCCGGGGACTGCAAATTTGGAGAGGTGCGTGTTACGTGGCGAAACAAAT
TGAGAGAAAGAAGCGAAAGATTTTCTCATTCGGGATGGACGCATCTCACT
TTTACGCACGTCCGATTTCGGTGCACACATCCCTCAAACATTTTGCACAC
CCATACACACACAGCCCTGACCCCGCGGCGAAGACGTGGGATTTTGAGCT
CGTGGGTCAGCAGCTGCAGCAGAATCCACAAGGCAGCCACATGTCCTTGC
CGGGGATGGAGCTCGCCCTGTCGAACTCATTTGGCTTCGGTGGCGTGAAC
GTCTCGTTGCTCTTTCGCCGTTGTACATAGATAAAGAGGGCTAGATTATG
TCGGAATGGGATCAAGTATTGGTGAAAGAAGGAGAAGAAACTAGACCAAC
TTTCGGACGGAG
back to top

Coding sequence (CDS) from alignment at chr5:293882..295943+

>NO05G00970.2 ID=NO05G00970.2|Name=NO05G00970.2|organism=Nannochloropsis oceanica|type=CDS|length=1251bp|location=Sequence derived from alignment at chr5:293882..295943+ (Nannochloropsis oceanica)
ATGGCAGTGGCACGGCGAGGGGTGGTGGTCACAGGAATCGGGATTGTCAG
CCCTTTGGGCGTGGGCACCAAGGCAACCTGGGATGCCCTCTTGGCGGGGC
GCATTGGGGTGCGGGCTTTGGATGCCGAGAAGGATAATATTCTCAAGCTG
GCGAATATGCCTTCGCGGATAGCTGCCCCTGTCGACCAATCCCTAATCCT
TCCTCCACCCGGGGAGGAAGGCAACTGGTCTCGTCTCTCCCCCTTCATCC
GCTATGCTATGCTTGCCGCCGACGAAGCCTTGGACCACGCCCAGTGGCAT
CCCTCCACCCCCACCGAAAAAGAACGCAGCGGTGTTTATATCGGAACGGG
CATCGGGTGTCTAGATGAAATTGTGGAGGCGAACCGCATCATCCATTCAG
GAGGGGGGGTCCGTCGTCTGAGTCCTCATTTCGTCCCCAAAATTCTTGGC
AATCTCGCAACTGGTAATGTCAGCATCAGACATGGACTGCAGGGGCCCAA
TCACGCATCCATCACAGCGTGTGCCAGTGGAGCACATGCAGTGGGGGATG
CCTTTCGGATGATTCAATTTGGGGATGCAGATGTGGTGGTGGCGGGTGGG
ACAGAGGCATGCATAAATGCCATTTCCCTTGGAGGCTTCTCCCGCCTTCG
GGCATTGAGCACAAAGTACAACGATGCGCCTCGCCAAGCTTCGCGGCCAT
TCGATTCGGGAAGAGACGGTTTTGTGATTGGAGAGGGTGCAGCGGTATTG
GTTTTGGAGGAGAAGGCGCACGCACGAGCGAGGGGGGCGAAGGCCTTGGC
GGAAGTGATAGGCTACGGCATGGCCGGTGACGCTCACCATATTACTGCTC
CTTCTCCTGATGGGGGGGGCGCGTTTAGAGCTATGCGTTCCGCGTTGAAA
AATGCAGGTGTGGCGGGGAGGAAGGGAGAAGGAGGGAGTGAGGGGGTGAG
AATGGGAGAGGTGGATTATGTGAACGCTCACGCAACGTCGACGCCGGTGG
GGGACACGATTGAGGGAAATGCGATTCAGCGCCTGCTTGTCGAGCATAGG
AAGGAGAAGGGGGAGCGGTCAGATACGGAGAGCTATCAGAAGAAGCAGAT
GTATGTCTCGTCGACCAAGGGGGCAACGGGTCATTTGCTCGGAGCAGCGG
GGGCGTTGGAGGCTGCGTTTACGGTTTTGGCACTGCGGGATGGCGTGGTG
CCGGGGACTGCAAATTTGGAGAGGTGCGTGTTACGTGGCGAAACAAATTG
A
back to top
Synonyms
Publications