NO05G00950.1, NO05G00950.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO05G00950.1
Unique Name	NO05G00950.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2166
Alignment location	chr5:289999..292164 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr5	genome	chr5:289999..292164 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO05G00950.1 vs.
Match: EWM28283.1 (hypothetical protein Naga_100004g10 [Nannochloropsis gaditana])

HSP 1 Score: 302.0 bits (772), Expect = 5.000e-78
Identity = 247/623 (39.65%), Postives = 320/623 (51.36%), Query Frame = 0

Query:  108 HRS---DSNKTKVKSRLPDAAFTFDDDKEEEKEEMEDEEEDEV--RRPVSKVPRRQRLTAGLSLPLVTRIQPQHLEGRQKEDEEEEEGEEAAAV----ESGEGEEEESIITDTEILAATTATRQQSPLQALRRRRAVNGDGTGSNRSDHSFGTTSTSTSTSTR--MGAPTTMPSKRPPSSSLRLPHAHPVRNSRLNSHSFHSSSSFTSSNMPNPTPFPSSLYSSKL-VSVRQKQRGRGRWWVLRWWPFPSVSSWDMRKWVVPQDCAFKRGWDMLTVVLATVVLCSDAASLIQQHQNPPSHPSSSSSSSPSTFLSSDNNLGDSSNPSFSSSSSSSSLDPSSLYHLLLLEAIWFLVDLALSFRTEVEIVLDDDDAAAAAIAAGHVMGRQAGGGGGGGGAAAAAAAAAAGESETETILLLRDPRAIAIQYLSRDFWLDLCLSFPWLAIAALLLTPKRKKRNAMRRALGHVGRGLGGFLGKLKNGVGSKIPRFLRPDNVKRFFVWTRLLEVKKVDGVKHVVKYRKEYRGLRMCIRGIKWLCRFPVASFIWRVHRKLEAHLVVAVEEVWGDDREEERKAKVWRAGQSRRGGMALSPSLLMVEEEWGGYKGEENRSFHGGE-DGERGGG 718
            HRS   DS++  V+  + +   +   D+EEE++ +E++EE+E        + PRR                         ED+E ++G          E+G  E E   I D+E+ A       +    +       +  G+  +   H  G       TS R   GA   M    PP SS   P  H     R             SS  P+P PFPS L  ++  V  R K RGRGRWW+LRW P PS      R WV+ QD  +KR WDMLTV++A +VLC DAASL+  H  P   P     SSP               PS   SS+S    PS     L   +++              ++L +     A +A       +AG                  E+ETET++LL DP AIA+QYL+RDFWLDLC SFPWLAI+ALLL PK+KKRN +RRA+GHVGRG+GG LG++K GVG KIPR LRP NVKRF  WT++L+VKKVDGVKHVVKYR  YRGLR+ IR ++WLCRFPV SF+WRV+RKLEAHLVVA+ +  G + E +   KVWRA  +R  G   S      E+    ++ + NR FH GE D E  GG
Sbjct:  143 HRSMLQDSSEDFVE-HVRNGILSLSPDREEEEDSVEEKEEEEWDGTEEEGRCPRRGF-----------------------EDKERKKGTREPVWRGKGEAGGCEREAKRIVDSEVEACGPCPPPRRYPVSEESAGRESASGSVFSSYYHGKGENHALRETSPRGPAGAKRMMRIYAPPPSSPSCPPLHRRPRPRC-----------LSSPSPSP-PFPSLLSLTRSQVPTRPKPRGRGRWWLLRWRPLPSWFGRHSRPWVLRQDSPWKRAWDMLTVLVALLVLCYDAASLVHLHPGP--FPPGPIPSSP---------------PSAPPSSASFQASPSPAPSPLDATSLY-------------HLLLLETFWFLADLALAFRTEVEAG---------------VDSEAETETLVLLTDPHAIAVQYLTRDFWLDLCFSFPWLAISALLLAPKQKKRNLLRRAIGHVGRGVGGLLGRVKRGVGEKIPRMLRPGNVKRFLEWTKVLDVKKVDGVKHVVKYRSGYRGLRLFIRALRWLCRFPVVSFLWRVYRKLEAHLVVALPDGEGGEEERKTPGKVWRARHTRSRGTHAS---TRQEDYEVKFREKANRKFHTGEVDREAIGG 681

The following BLAST results are available for this feature:

BLAST of NO05G00950.1 vs.

BLAST of NO05G00950.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM28283.1	5.000e-78	39.65	hypothetical protein Naga_100004g10 [Nannochlorops...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO05G00950	NO05G00950	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO05G00950.1	NO05G00950.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO05G00950.1.cds1	NO05G00950.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr5:289999..292164-
coding sequence from alignment at chr5:289999..292164-

mRNA sequence

>NO05G00950.1 ID=NO05G00950.1|Name=NO05G00950.1|organism=Nannochloropsis oceanica|type=mRNA|length=2166bp
ATGGACTTCACAACATTCACAGGCTTTTCTGATACGCCACCCGCGAGCGG
GTGCGACCGGGGAGGCCTGTTTGTCAACTGCCAATCGGAAGCGATGCCCC
ACTATACTCCACCTCCGCCCGGCACCATGAGTAATTATATGGCCAACAAA
AAGCGCAGGCGCGATCGACGTGCTTATCCAATCCCCACCGCCCAGCTTGA
CCACATCAACTCCGGGGGGGTGTCGGTCGCCTCCTCCCCCTCCTCGTCCT
CCCCATCTGCAGCGCAACAAGCGCAAATGCACAAAGAGGGCAGGTGCACG
CACTGCACTTACCGCATCGCACATCGATCTGATAGCAACAAGACCAAGGT
AAAAAGTCGTTTGCCAGATGCGGCTTTTACATTTGATGATGACAAGGAAG
AGGAGAAGGAAGAGATGGAGGACGAAGAAGAGGACGAGGTGCGACGACCT
GTTTCTAAAGTACCCCGACGACAGCGCCTCACGGCCGGCCTTTCCTTGCC
CTTGGTAACAAGAATACAGCCCCAACATCTCGAAGGACGACAAAAAGAGG
ACGAAGAGGAGGAGGAGGGGGAGGAGGCGGCAGCGGTGGAAAGCGGGGAA
GGGGAGGAGGAGGAGTCGATAATTACAGACACGGAGATTCTGGCCGCGAC
GACCGCAACGCGGCAACAATCTCCGCTGCAAGCACTCCGACGGCGTCGAG
CCGTCAATGGTGATGGCACTGGCAGTAACAGGAGCGACCACTCCTTTGGC
ACCACCAGCACCAGCACCAGCACCAGCACCAGAATGGGAGCACCAACGAC
AATGCCATCCAAAAGGCCACCTTCTTCCTCCCTCCGCCTCCCGCACGCTC
ATCCTGTCCGCAACAGCCGACTTAACAGCCATTCTTTCCATTCATCGTCC
TCCTTCACCTCCTCCAACATGCCCAACCCTACCCCCTTCCCCTCCTCCCT
CTACAGCAGCAAGCTCGTCTCTGTCCGCCAAAAGCAACGAGGGCGTGGTC
GATGGTGGGTATTGCGGTGGTGGCCCTTCCCATCGGTTTCATCTTGGGAC
ATGAGGAAGTGGGTCGTGCCACAAGACTGCGCCTTCAAGAGAGGGTGGGA
CATGCTGACGGTGGTTCTGGCAACTGTCGTCTTGTGTAGTGACGCGGCCT
CCCTGATACAGCAACACCAAAACCCGCCCTCCCACCCTTCCTCCTCCTCG
TCTTCCTCGCCGTCAACCTTCCTGTCCAGTGACAATAATTTGGGCGACAG
TTCCAACCCATCTTTCTCCTCGTCCTCCTCCTCGTCCTCCCTCGATCCTT
CCTCTCTCTATCACCTTCTCCTCCTGGAAGCGATTTGGTTTTTGGTCGAC
TTGGCCCTCTCTTTCCGTACCGAAGTGGAAATCGTGCTCGATGATGATGA
TGCTGCTGCTGCGGCTATTGCTGCCGGTCACGTGATGGGGAGACAGGCAG
GGGGAGGAGGAGGAGGAGGAGGAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCGGGGGAGAGTGAAACCGAAACAATCCTCCTCCTCCGCGACCCCCGCGC
CATCGCTATTCAATACCTGAGTCGGGATTTTTGGTTGGACTTGTGCCTTT
CCTTCCCGTGGTTGGCGATTGCTGCCTTACTGCTTACGCCAAAGCGGAAG
AAGCGGAATGCAATGAGGCGGGCCTTGGGACACGTGGGCAGAGGGTTAGG
TGGATTTCTAGGGAAGTTGAAAAATGGGGTCGGCTCGAAGATACCGCGAT
TCTTGCGGCCCGACAATGTGAAGAGGTTCTTCGTGTGGACTAGGCTGTTG
GAGGTGAAGAAGGTGGATGGCGTGAAGCATGTGGTGAAGTATAGGAAGGA
ATATAGAGGATTGAGGATGTGTATTCGGGGAATTAAGTGGTTGTGTCGTT
TCCCGGTCGCCTCGTTTATTTGGCGCGTACATCGAAAATTGGAGGCTCAC
TTGGTGGTGGCGGTGGAGGAAGTTTGGGGGGATGACCGGGAGGAAGAGAG
GAAGGCAAAGGTTTGGAGGGCGGGGCAGTCGAGGAGGGGAGGGATGGCAT
TGTCGCCGTCCTTGTTGATGGTGGAGGAGGAGTGGGGAGGTTACAAAGGA
GAGGAGAATAGATCATTCCATGGTGGGGAGGACGGGGAGAGAGGGGGGGG
GGAGGCGGAGGGATAG

protein sequence of NO05G00950.1

>NO05G00950.1-protein ID=NO05G00950.1-protein|Name=NO05G00950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=722bp
MDFTTFTGFSDTPPASGCDRGGLFVNCQSEAMPHYTPPPPGTMSNYMANK
KRRRDRRAYPIPTAQLDHINSGGVSVASSPSSSSPSAAQQAQMHKEGRCT
HCTYRIAHRSDSNKTKVKSRLPDAAFTFDDDKEEEKEEMEDEEEDEVRRP
VSKVPRRQRLTAGLSLPLVTRIQPQHLEGRQKEDEEEEEGEEAAAVESGE
GEEEESIITDTEILAATTATRQQSPLQALRRRRAVNGDGTGSNRSDHSFG
TTSTSTSTSTRMGAPTTMPSKRPPSSSLRLPHAHPVRNSRLNSHSFHSSS
SFTSSNMPNPTPFPSSLYSSKLVSVRQKQRGRGRWWVLRWWPFPSVSSWD
MRKWVVPQDCAFKRGWDMLTVVLATVVLCSDAASLIQQHQNPPSHPSSSS
SSSPSTFLSSDNNLGDSSNPSFSSSSSSSSLDPSSLYHLLLLEAIWFLVD
LALSFRTEVEIVLDDDDAAAAAIAAGHVMGRQAGGGGGGGGAAAAAAAAA
AGESETETILLLRDPRAIAIQYLSRDFWLDLCLSFPWLAIAALLLTPKRK
KRNAMRRALGHVGRGLGGFLGKLKNGVGSKIPRFLRPDNVKRFFVWTRLL
EVKKVDGVKHVVKYRKEYRGLRMCIRGIKWLCRFPVASFIWRVHRKLEAH
LVVAVEEVWGDDREEERKAKVWRAGQSRRGGMALSPSLLMVEEEWGGYKG
EENRSFHGGEDGERGGGEAEG*

mRNA from alignment at chr5:289999..292164-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO05G00950.1 ID=NO05G00950.1|Name=NO05G00950.1|organism=Nannochloropsis oceanica|type=mRNA|length=2166bp|location=Sequence derived from alignment at chr5:289999..292164- (Nannochloropsis oceanica)
ATGGACTTCACAACATTCACAGGCTTTTCTGATACGCCACCCGCGAGCGG
GTGCGACCGGGGAGGCCTGTTTGTCAACTGCCAATCGGAAGCGATGCCCC
ACTATACTCCACCTCCGCCCGGCACCATGAGTAATTATATGGCCAACAAA
AAGCGCAGGCGCGATCGACGTGCTTATCCAATCCCCACCGCCCAGCTTGA
CCACATCAACTCCGGGGGGGTGTCGGTCGCCTCCTCCCCCTCCTCGTCCT
CCCCATCTGCAGCGCAACAAGCGCAAATGCACAAAGAGGGCAGGTGCACG
CACTGCACTTACCGCATCGCACATCGATCTGATAGCAACAAGACCAAGGT
AAAAAGTCGTTTGCCAGATGCGGCTTTTACATTTGATGATGACAAGGAAG
AGGAGAAGGAAGAGATGGAGGACGAAGAAGAGGACGAGGTGCGACGACCT
GTTTCTAAAGTACCCCGACGACAGCGCCTCACGGCCGGCCTTTCCTTGCC
CTTGGTAACAAGAATACAGCCCCAACATCTCGAAGGACGACAAAAAGAGG
ACGAAGAGGAGGAGGAGGGGGAGGAGGCGGCAGCGGTGGAAAGCGGGGAA
GGGGAGGAGGAGGAGTCGATAATTACAGACACGGAGATTCTGGCCGCGAC
GACCGCAACGCGGCAACAATCTCCGCTGCAAGCACTCCGACGGCGTCGAG
CCGTCAATGGTGATGGCACTGGCAGTAACAGGAGCGACCACTCCTTTGGC
ACCACCAGCACCAGCACCAGCACCAGCACCAGAATGGGAGCACCAACGAC
AATGCCATCCAAAAGGCCACCTTCTTCCTCCCTCCGCCTCCCGCACGCTC
ATCCTGTCCGCAACAGCCGACTTAACAGCCATTCTTTCCATTCATCGTCC
TCCTTCACCTCCTCCAACATGCCCAACCCTACCCCCTTCCCCTCCTCCCT
CTACAGCAGCAAGCTCGTCTCTGTCCGCCAAAAGCAACGAGGGCGTGGTC
GATGGTGGGTATTGCGGTGGTGGCCCTTCCCATCGGTTTCATCTTGGGAC
ATGAGGAAGTGGGTCGTGCCACAAGACTGCGCCTTCAAGAGAGGGTGGGA
CATGCTGACGGTGGTTCTGGCAACTGTCGTCTTGTGTAGTGACGCGGCCT
CCCTGATACAGCAACACCAAAACCCGCCCTCCCACCCTTCCTCCTCCTCG
TCTTCCTCGCCGTCAACCTTCCTGTCCAGTGACAATAATTTGGGCGACAG
TTCCAACCCATCTTTCTCCTCGTCCTCCTCCTCGTCCTCCCTCGATCCTT
CCTCTCTCTATCACCTTCTCCTCCTGGAAGCGATTTGGTTTTTGGTCGAC
TTGGCCCTCTCTTTCCGTACCGAAGTGGAAATCGTGCTCGATGATGATGA
TGCTGCTGCTGCGGCTATTGCTGCCGGTCACGTGATGGGGAGACAGGCAG
GGGGAGGAGGAGGAGGAGGAGGAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCGGGGGAGAGTGAAACCGAAACAATCCTCCTCCTCCGCGACCCCCGCGC
CATCGCTATTCAATACCTGAGTCGGGATTTTTGGTTGGACTTGTGCCTTT
CCTTCCCGTGGTTGGCGATTGCTGCCTTACTGCTTACGCCAAAGCGGAAG
AAGCGGAATGCAATGAGGCGGGCCTTGGGACACGTGGGCAGAGGGTTAGG
TGGATTTCTAGGGAAGTTGAAAAATGGGGTCGGCTCGAAGATACCGCGAT
TCTTGCGGCCCGACAATGTGAAGAGGTTCTTCGTGTGGACTAGGCTGTTG
GAGGTGAAGAAGGTGGATGGCGTGAAGCATGTGGTGAAGTATAGGAAGGA
ATATAGAGGATTGAGGATGTGTATTCGGGGAATTAAGTGGTTGTGTCGTT
TCCCGGTCGCCTCGTTTATTTGGCGCGTACATCGAAAATTGGAGGCTCAC
TTGGTGGTGGCGGTGGAGGAAGTTTGGGGGGATGACCGGGAGGAAGAGAG
GAAGGCAAAGGTTTGGAGGGCGGGGCAGTCGAGGAGGGGAGGGATGGCAT
TGTCGCCGTCCTTGTTGATGGTGGAGGAGGAGTGGGGAGGTTACAAAGGA
GAGGAGAATAGATCATTCCATGGTGGGGAGGACGGGGAGAGAGGGGGGGG
GGAGGCGGAGGGATAG

Coding sequence (CDS) from alignment at chr5:289999..292164-

>NO05G00950.1 ID=NO05G00950.1|Name=NO05G00950.1|organism=Nannochloropsis oceanica|type=CDS|length=2166bp|location=Sequence derived from alignment at chr5:289999..292164- (Nannochloropsis oceanica)
ATGGACTTCACAACATTCACAGGCTTTTCTGATACGCCACCCGCGAGCGG
GTGCGACCGGGGAGGCCTGTTTGTCAACTGCCAATCGGAAGCGATGCCCC
ACTATACTCCACCTCCGCCCGGCACCATGAGTAATTATATGGCCAACAAA
AAGCGCAGGCGCGATCGACGTGCTTATCCAATCCCCACCGCCCAGCTTGA
CCACATCAACTCCGGGGGGGTGTCGGTCGCCTCCTCCCCCTCCTCGTCCT
CCCCATCTGCAGCGCAACAAGCGCAAATGCACAAAGAGGGCAGGTGCACG
CACTGCACTTACCGCATCGCACATCGATCTGATAGCAACAAGACCAAGGT
AAAAAGTCGTTTGCCAGATGCGGCTTTTACATTTGATGATGACAAGGAAG
AGGAGAAGGAAGAGATGGAGGACGAAGAAGAGGACGAGGTGCGACGACCT
GTTTCTAAAGTACCCCGACGACAGCGCCTCACGGCCGGCCTTTCCTTGCC
CTTGGTAACAAGAATACAGCCCCAACATCTCGAAGGACGACAAAAAGAGG
ACGAAGAGGAGGAGGAGGGGGAGGAGGCGGCAGCGGTGGAAAGCGGGGAA
GGGGAGGAGGAGGAGTCGATAATTACAGACACGGAGATTCTGGCCGCGAC
GACCGCAACGCGGCAACAATCTCCGCTGCAAGCACTCCGACGGCGTCGAG
CCGTCAATGGTGATGGCACTGGCAGTAACAGGAGCGACCACTCCTTTGGC
ACCACCAGCACCAGCACCAGCACCAGCACCAGAATGGGAGCACCAACGAC
AATGCCATCCAAAAGGCCACCTTCTTCCTCCCTCCGCCTCCCGCACGCTC
ATCCTGTCCGCAACAGCCGACTTAACAGCCATTCTTTCCATTCATCGTCC
TCCTTCACCTCCTCCAACATGCCCAACCCTACCCCCTTCCCCTCCTCCCT
CTACAGCAGCAAGCTCGTCTCTGTCCGCCAAAAGCAACGAGGGCGTGGTC
GATGGTGGGTATTGCGGTGGTGGCCCTTCCCATCGGTTTCATCTTGGGAC
ATGAGGAAGTGGGTCGTGCCACAAGACTGCGCCTTCAAGAGAGGGTGGGA
CATGCTGACGGTGGTTCTGGCAACTGTCGTCTTGTGTAGTGACGCGGCCT
CCCTGATACAGCAACACCAAAACCCGCCCTCCCACCCTTCCTCCTCCTCG
TCTTCCTCGCCGTCAACCTTCCTGTCCAGTGACAATAATTTGGGCGACAG
TTCCAACCCATCTTTCTCCTCGTCCTCCTCCTCGTCCTCCCTCGATCCTT
CCTCTCTCTATCACCTTCTCCTCCTGGAAGCGATTTGGTTTTTGGTCGAC
TTGGCCCTCTCTTTCCGTACCGAAGTGGAAATCGTGCTCGATGATGATGA
TGCTGCTGCTGCGGCTATTGCTGCCGGTCACGTGATGGGGAGACAGGCAG
GGGGAGGAGGAGGAGGAGGAGGAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCGGGGGAGAGTGAAACCGAAACAATCCTCCTCCTCCGCGACCCCCGCGC
CATCGCTATTCAATACCTGAGTCGGGATTTTTGGTTGGACTTGTGCCTTT
CCTTCCCGTGGTTGGCGATTGCTGCCTTACTGCTTACGCCAAAGCGGAAG
AAGCGGAATGCAATGAGGCGGGCCTTGGGACACGTGGGCAGAGGGTTAGG
TGGATTTCTAGGGAAGTTGAAAAATGGGGTCGGCTCGAAGATACCGCGAT
TCTTGCGGCCCGACAATGTGAAGAGGTTCTTCGTGTGGACTAGGCTGTTG
GAGGTGAAGAAGGTGGATGGCGTGAAGCATGTGGTGAAGTATAGGAAGGA
ATATAGAGGATTGAGGATGTGTATTCGGGGAATTAAGTGGTTGTGTCGTT
TCCCGGTCGCCTCGTTTATTTGGCGCGTACATCGAAAATTGGAGGCTCAC
TTGGTGGTGGCGGTGGAGGAAGTTTGGGGGGATGACCGGGAGGAAGAGAG
GAAGGCAAAGGTTTGGAGGGCGGGGCAGTCGAGGAGGGGAGGGATGGCAT
TGTCGCCGTCCTTGTTGATGGTGGAGGAGGAGTGGGGAGGTTACAAAGGA
GAGGAGAATAGATCATTCCATGGTGGGGAGGACGGGGAGAGAGGGGGGGG
GGAGGCGGAGGGATAG

Synonyms

Publications