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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr5 | genome | chr5:280057..282931 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G00910.1 vs.
Match: XP_005853695.1 (argininosuccinate synthetase [Nannochloropsis gaditana CCMP526]; EKU22666.1 argininosuccinate synthetase [Nannochloropsis gaditana CCMP526]; EWM28271.1 argininosuccinate synthase [Nannochloropsis gaditana]) HSP 1 Score: 737.6 bits (1903), Expect = 2.100e-209 Identity = 356/383 (92.95%), Postives = 371/383 (96.87%), Query Frame = 0
Query: 16 MAEKPKCVLAYSGGLDTSVILVWLIEKGFDVICYCANVGQYKEDFEKVREKAMKCGASKVYIEDLREEFVKEYVFWAVKANAQYEGRYLLGTSLARPVIAKRQVEIAQKEGAKWLSHGATGKGNDQVRFELCALALDATIQTLAPWREKEFIEQFKGRQDLLDYAAAHNIQVEATKKAPYSVDENLYHTSYESGMLEDPMVPPLKEMFKMTVDPEDAPDKSEKIRIDFQAGVPVKVTNHDDGTVKTDALELFLYLNDLAGKHGVGRIDIVENRFVGIKSRGVYETPGGQILREAHMDLEGLCIDREVLRLKEGHQLEFSRLCYNGFWFAPEMELTMAAIDWTQKHVTGGVELSLYKGNVTVLGRESPFSLYSADLASMDIEGG 399
MA KPKCVLAYSGGLDTSVILVWLIEKGFDVICYCANVGQ KEDF+KVREKA+KCGASKVYIEDLREEFVK+YVFWAVKANAQYEGRYLLGTSLARPVIAKRQVEIAQKEGAKWLSHGATGKGNDQVRFELCA ALDA IQTLAPWRE EFIE+FKGRQDLLDYAAAHNIQVEATKKA YSVDENLYHTSYESGMLEDPMVPPLKEMFKMTVDPEDAPDK+EK+RIDF+ GVPVKVTNHDDGTVKT+ LELFLYLN+LAGKHGVGRIDIVENRFVGIKSRGVYETPGGQILR AHMDLEGLC+DREVLRLKEGHQLEFSRLCYNGFWFAPEMELT A+ID+TQ+ V GGVELSLYKGNVTVLGRESP+SLYSADLASM+IEGG
Sbjct: 1 MAGKPKCVLAYSGGLDTSVILVWLIEKGFDVICYCANVGQLKEDFDKVREKALKCGASKVYIEDLREEFVKDYVFWAVKANAQYEGRYLLGTSLARPVIAKRQVEIAQKEGAKWLSHGATGKGNDQVRFELCAQALDAAIQTLAPWRETEFIERFKGRQDLLDYAAAHNIQVEATKKASYSVDENLYHTSYESGMLEDPMVPPLKEMFKMTVDPEDAPDKAEKVRIDFEEGVPVKVTNHDDGTVKTEPLELFLYLNELAGKHGVGRIDIVENRFVGIKSRGVYETPGGQILRVAHMDLEGLCVDREVLRLKEGHQLEFSRLCYNGFWFAPEMELTKASIDFTQRRVAGGVELSLYKGNVTVLGRESPYSLYSADLASMEIEGG 383
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G00910.1 ID=NO05G00910.1|Name=NO05G00910.1|organism=Nannochloropsis oceanica|type=mRNA|length=1858bp GCTGGCGACAGTTGTGGATGGCTTCAGGGCGAGGAGGCTATGGCGGCGGT GGTTTCTTTGTGTCATTTCCTTTCCTCACAGTCAGATTTCTGATTTTATG ACAACAAGATGATGCGTTATATAACTCCAGTCATGTCCATGGCTTTATCC CAGCATCTGAGCCTTTGCATTCCCTTATCATGCAACATACACACAGATCT ATCCATCCAATCAACCCCCAAACCATGGCCGAGAAGCCCAAGTGCGTTCT AGCATACAGCGGTGGCTTGGATACGTCTGTAATCCTCGTCTGGCTCATTG AAAAGGGTTTCGATGTCATTTGCTATTGCGCCAATGTTGGCCAGTATAAA GAGGACTTTGAGAAGGTCCGAGAGAAGGCCATGAAGTGTGGTGCATCCAA GGTGTACATTGAGGATCTTCGCGAGGAGTTTGTGAAGGAGTACGTCTTTT GGGCTGTCAAGGCCAACGCCCAATATGAAGGCCGCTACCTCCTCGGCACC TCCCTCGCCCGTCCTGTTATCGCCAAGCGCCAAGTCGAGATTGCTCAAAA AGAGGGGGCGAAGTGGTTGTCGCACGGGGCCACCGGGAAAGGAAACGACC AAGTGCGGTTCGAGTTGTGTGCTCTGGCGTTGGATGCCACCATTCAGACG TTAGCCCCCTGGAGGGAAAAGGAGTTCATTGAGCAGTTTAAGGGACGACA GGACCTGTTGGATTACGCGGCGGCACATAACATCCAGGTGGAAGCGACCA AGAAAGCCCCTTACTCCGTGGACGAGAACCTCTACCACACGTCCTACGAG AGCGGGATGCTCGAAGACCCCATGGTGCCCCCTCTCAAGGAGATGTTCAA GATGACGGTCGACCCCGAGGATGCCCCTGATAAGTCCGAGAAAATCCGCA TTGACTTCCAGGCTGGGGTGCCCGTGAAGGTGACCAACCACGACGACGGC ACGGTGAAGACGGACGCGCTGGAGCTGTTTTTGTACCTAAATGACCTGGC TGGGAAGCACGGCGTAGGGCGCATAGACATAGTGGAGAATCGCTTTGTTG GCATTAAATCCCGGGGGGTGTATGAGACCCCGGGGGGTCAGATTCTGCGG GAGGCGCATATGGACTTGGAAGGGTTGTGCATTGACCGAGAGGTGCTGCG GTTGAAGGAAGGGCACCAGTTGGAGTTTTCCCGCCTGTGTTACAACGGGT TTTGGTTCGCGCCTGAAATGGAGTTAACCATGGCAGCGATTGACTGGACG CAGAAGCACGTGACGGGAGGAGTGGAGTTGAGTCTGTACAAGGGGAATGT GACGGTGCTGGGACGAGAGAGTCCGTTTTCGCTATACTCGGCGGATTTGG CGAGCATGGATATTGAGGGGGGGGTTCGGCGTTTGATTACGACCCGATGG ATGCCCAGGGATTTATTCGTATTAATGGTGTGAGGCTCAAGGCGTACAAT GCGCTGCAGAGGACGTTTCAGAAGTAATCATATTGAGTGATGGGGAGGGA GAAGAGGACCGGGACGGAGGAGGACTGCTGGAAGACACAGGTGGAGGCAA ACGTGACGAAAGCAGAACGTAGAAATGCAAGAGACGAGGAAGGGGTAAGA GAGGAAAGAGCAGAAGGAGAAAGATTAAGTTACAGAGGGGAGAAAGGAGT AATTGCATATCGGGAAATGCAAAGAAAAACGTTTTTGAGGAGAGTGGACG ATGAGTACTACAACCATCGAATGTGTCGCGGTGCCGGCGATATGAGTGAG TTTTGGAATGGAGGCTTCGGAAGGAGACAGTTGTCTGAGTCACTCGAGCA AAAGCACAACACAACATAATATGAATGCTTTGAAGAACTACGCGAGAGTC CTTGCAGG back to topprotein sequence of NO05G00910.1 >NO05G00910.1-protein ID=NO05G00910.1-protein|Name=NO05G00910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=418bp MQHTHRSIHPINPQTMAEKPKCVLAYSGGLDTSVILVWLIEKGFDVICYC ANVGQYKEDFEKVREKAMKCGASKVYIEDLREEFVKEYVFWAVKANAQYE GRYLLGTSLARPVIAKRQVEIAQKEGAKWLSHGATGKGNDQVRFELCALA LDATIQTLAPWREKEFIEQFKGRQDLLDYAAAHNIQVEATKKAPYSVDEN LYHTSYESGMLEDPMVPPLKEMFKMTVDPEDAPDKSEKIRIDFQAGVPVK VTNHDDGTVKTDALELFLYLNDLAGKHGVGRIDIVENRFVGIKSRGVYET PGGQILREAHMDLEGLCIDREVLRLKEGHQLEFSRLCYNGFWFAPEMELT MAAIDWTQKHVTGGVELSLYKGNVTVLGRESPFSLYSADLASMDIEGGVR RLITTRWMPRDLFVLMV* back to topmRNA from alignment at chr5:280057..282931+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G00910.1 ID=NO05G00910.1|Name=NO05G00910.1|organism=Nannochloropsis oceanica|type=mRNA|length=2875bp|location=Sequence derived from alignment at chr5:280057..282931+ (Nannochloropsis oceanica) GCTGGCGACAGTTGTGGATGGCTTCAGGGCGAGGAGGCTATGGCGGCGGT
GGTTTCTTTGTGTCATTTCCTTTCCTCACAGTCAGATTTCTGATTTTATG
ACAACAAGATGATGCGTTATATAACTCCAGTCATGTCCATGGCTTTATCC
CAGCATCTGAGCCTTTGCATTCCCTTATCATGCAACATACACACAGATCT
ATCCATCCAATCAACCCCCAAACCATGGCCGAGAAGCCCAAGTGCGTTCT
AGCATACAGCGGTGGCTTGGATACGTCTGTAATCCTCGTCTGGCTCATTG
AAAAGGTACGTTGTAACCGAATTAGCGTGCGGATGCGCCTGATTGTTTCG
GAGGTGCATTTTTAGTTTTAGCCTCCCCACCCACTCCAGCCTTATGTCCT
CACCGAACCTTTCTTGTTTTCCTTCCAACGTAGGGTTTCGATGTCATTTG
CTATTGCGCCAATGTTGGCCAGTATAAAGAGGACTTTGAGAAGGTCCGAG
AGAAGGCCATGAAGTGTGGTGCATCCAAGGTAAGATTCGGTGGACTAAGA
AGTGACGGCTGGCGGGAGAGTATCTTTTCTCAAAGTAAAGCGGGCGAACA
TGTCGCATTACGCAAATAGCTCACATGCAAACATTCCCCAACATTCATCG
CAATTGTCAATAGGTGTACATTGAGGATCTTCGCGAGGAGTTTGTGAAGG
AGTACGTCTTTTGGGCTGTCAAGGTGAGCATTAGATGTGGGAATCTTGGC
AGCAGGTCGACCTCCCCTTTTCTCTCTCGTGCCTTTTCCCTTCTTATCTC
CCCGCCTATGGACCCGATCGAGAACAAATGGAGGGGTTAAAATTATGAAG
GTAGTCTCCTTTATTTTGCGCATGAGCAGCGACATCCATTTCTCTCTTTT
TATGGGTAACATAACATATAACCCCCCCACCCCCCTTCCTCCCTCCCTCC
CTTCCTTCCCCTCTCCCTCCCCTCCCCCCTCCTCTTTCCACAGGCCAACG
CCCAATATGAAGGCCGCTACCTCCTCGGCACCTCCCTCGCCCGTCCTGTT
ATCGCCAAGCGCCAAGTCGAGATTGCTCAAAAAGAGGGGGCGAAGTGGTT
GTCGCACGGGGCCACCGGGAAAGGAAACGACCAAGTGCGGTTCGAGTTGT
GTGCTCTGGCGTTGGATGCCACCATTCAGACGTTAGCCCCCTGGAGGGAA
AAGGAGTTCATTGAGCAGTTTAAGGGACGACAGGACCTGTTGGATTACGC
GGCGGCACATAACATCCAGGTCCAGGAGGGAGGGAGGGACGGAGGGAGGG
TCAGAGGGAGGGACGGAGGGCGTGAGGGGGTGCCCGCTTCCTTCTTTTTT
TTCAAGAGAAGTTTTTTTCTTCCAGGAAAAATTAGCATTTCCTGAATATG
AGGAAATATAAATAGCTTTCACTCATTCGTTATCCTCCCTCCCCCTCCAT
TGACCAGGTGGAAGCGACCAAGAAAGCCCCTTACTCCGTGGACGAGAACC
TCTACCACACGTCCTACGAGAGCGGGATGCTCGAAGACCCCATGGTGCCC
CCTCTCAAGGAGATGTTCAAGATGACGGTCGACCCCGAGGATGCCCCTGA
TAAGGTATTTCGTCGTCGTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTT
TTTCTCTCTCTCTCTTTTTCTCTCTCTTTCTTTCTTCCTTTTCATTCCCC
TTCCCCTCTTTCCTCCGCCCTCCCGCCCTCCCTGCGCCTCTTCTCCCGTT
CTTCCTTTCCTCCTTCATGCCATGTTGTTTCCTTCACTAGGAATCGGCTG
GTATTGAGAGGACAGACGAGCCCACAACAGGACCAAGTAAGCATCACAGA
GTCACCTCTTTCCCTCCCACCCTCTTTCCCTCCCTCCCTCCTTTCCCCCA
GTCCGAGAAAATCCGCATTGACTTCCAGGCTGGGGTGCCCGTGAAGGTGA
CCAACCACGACGACGGCACGGTGAAGACGGACGCGCTGGAGCTGTTTTTG
TACCTAAATGACCTGGCTGGGAAGCACGGCGTAGGGCGCATAGACATAGT
GGAGAATCGCTTTGTTGGCATTAAATCCCGGGGGGTGTATGAGACCCCGG
GGGGTCAGATTCTGCGGGAGGCGCATATGGACTTGGAAGGGTTGTGCATT
GACCGAGAGGTGCTGCGGTTGAAGGAAGGGCACCAGTTGGAGTTTTCCCG
CCTGTGTTACAACGGGTTTTGGTTCGCGCCTGAAATGGAGTTAACCATGG
CAGCGATTGACTGGACGCAGAAGCACGTGACGGGAGGAGTGGAGTTGAGT
CTGTACAAGGGGAATGTGACGGTGCTGGGACGAGAGAGTCCGTTTTCGCT
ATACTCGGCGGATTTGGCGAGCATGGATATTGAGGGGGGGGTTCGGCGTT
TGATTACGACCCGATGGATGCCCAGGGATTTATTCGTATTAATGGTGTGA
GGCTCAAGGCGTACAATGCGCTGCAGAGGACGTTTCAGAAGTAATCATAT
TGAGTGATGGGGAGGGAGAAGAGGACCGGGACGGAGGAGGACTGCTGGAA
GACACAGGTGGAGGCAAACGTGACGAAAGCAGAACGTAGAAATGCAAGAG
ACGAGGAAGGGGTAAGAGAGGAAAGAGCAGAAGGAGAAAGATTAAGTTAC
AGAGGGGAGAAAGGAGTAATTGCATATCGGGAAATGCAAAGAAAAACGTT
TTTGAGGAGAGTGGACGATGAGTACTACAACCATCGAATGTGTCGCGGTG
CCGGCGATATGAGTGAGTTTTGGAATGGAGGCTTCGGAAGGAGACAGTTG
TCTGAGTCACTCGAGCAAAAGCACAACACAACATAATATGAATGCTTTGA
AGAACTACGCGAGAGTCCTTGCAGG back to topCoding sequence (CDS) from alignment at chr5:280057..282931+ >NO05G00910.1 ID=NO05G00910.1|Name=NO05G00910.1|organism=Nannochloropsis oceanica|type=CDS|length=1254bp|location=Sequence derived from alignment at chr5:280057..282931+ (Nannochloropsis oceanica) ATGCAACATACACACAGATCTATCCATCCAATCAACCCCCAAACCATGGC CGAGAAGCCCAAGTGCGTTCTAGCATACAGCGGTGGCTTGGATACGTCTG TAATCCTCGTCTGGCTCATTGAAAAGGGTTTCGATGTCATTTGCTATTGC GCCAATGTTGGCCAGTATAAAGAGGACTTTGAGAAGGTCCGAGAGAAGGC CATGAAGTGTGGTGCATCCAAGGTGTACATTGAGGATCTTCGCGAGGAGT TTGTGAAGGAGTACGTCTTTTGGGCTGTCAAGGCCAACGCCCAATATGAA GGCCGCTACCTCCTCGGCACCTCCCTCGCCCGTCCTGTTATCGCCAAGCG CCAAGTCGAGATTGCTCAAAAAGAGGGGGCGAAGTGGTTGTCGCACGGGG CCACCGGGAAAGGAAACGACCAAGTGCGGTTCGAGTTGTGTGCTCTGGCG TTGGATGCCACCATTCAGACGTTAGCCCCCTGGAGGGAAAAGGAGTTCAT TGAGCAGTTTAAGGGACGACAGGACCTGTTGGATTACGCGGCGGCACATA ACATCCAGGTGGAAGCGACCAAGAAAGCCCCTTACTCCGTGGACGAGAAC CTCTACCACACGTCCTACGAGAGCGGGATGCTCGAAGACCCCATGGTGCC CCCTCTCAAGGAGATGTTCAAGATGACGGTCGACCCCGAGGATGCCCCTG ATAAGTCCGAGAAAATCCGCATTGACTTCCAGGCTGGGGTGCCCGTGAAG GTGACCAACCACGACGACGGCACGGTGAAGACGGACGCGCTGGAGCTGTT TTTGTACCTAAATGACCTGGCTGGGAAGCACGGCGTAGGGCGCATAGACA TAGTGGAGAATCGCTTTGTTGGCATTAAATCCCGGGGGGTGTATGAGACC CCGGGGGGTCAGATTCTGCGGGAGGCGCATATGGACTTGGAAGGGTTGTG CATTGACCGAGAGGTGCTGCGGTTGAAGGAAGGGCACCAGTTGGAGTTTT CCCGCCTGTGTTACAACGGGTTTTGGTTCGCGCCTGAAATGGAGTTAACC ATGGCAGCGATTGACTGGACGCAGAAGCACGTGACGGGAGGAGTGGAGTT GAGTCTGTACAAGGGGAATGTGACGGTGCTGGGACGAGAGAGTCCGTTTT CGCTATACTCGGCGGATTTGGCGAGCATGGATATTGAGGGGGGGGTTCGG CGTTTGATTACGACCCGATGGATGCCCAGGGATTTATTCGTATTAATGGT GTGA back to top
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