NO05G00910.1, NO05G00910.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G00910.1
Unique NameNO05G00910.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1858
Alignment locationchr5:280057..282931 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:280057..282931 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO05G00910.1 vs.
Match: XP_005853695.1 (argininosuccinate synthetase [Nannochloropsis gaditana CCMP526]; EKU22666.1 argininosuccinate synthetase [Nannochloropsis gaditana CCMP526]; EWM28271.1 argininosuccinate synthase [Nannochloropsis gaditana])

HSP 1 Score: 737.6 bits (1903), Expect = 2.100e-209
Identity = 356/383 (92.95%), Postives = 371/383 (96.87%), Query Frame = 0
Query:   16 MAEKPKCVLAYSGGLDTSVILVWLIEKGFDVICYCANVGQYKEDFEKVREKAMKCGASKVYIEDLREEFVKEYVFWAVKANAQYEGRYLLGTSLARPVIAKRQVEIAQKEGAKWLSHGATGKGNDQVRFELCALALDATIQTLAPWREKEFIEQFKGRQDLLDYAAAHNIQVEATKKAPYSVDENLYHTSYESGMLEDPMVPPLKEMFKMTVDPEDAPDKSEKIRIDFQAGVPVKVTNHDDGTVKTDALELFLYLNDLAGKHGVGRIDIVENRFVGIKSRGVYETPGGQILREAHMDLEGLCIDREVLRLKEGHQLEFSRLCYNGFWFAPEMELTMAAIDWTQKHVTGGVELSLYKGNVTVLGRESPFSLYSADLASMDIEGG 399
            MA KPKCVLAYSGGLDTSVILVWLIEKGFDVICYCANVGQ KEDF+KVREKA+KCGASKVYIEDLREEFVK+YVFWAVKANAQYEGRYLLGTSLARPVIAKRQVEIAQKEGAKWLSHGATGKGNDQVRFELCA ALDA IQTLAPWRE EFIE+FKGRQDLLDYAAAHNIQVEATKKA YSVDENLYHTSYESGMLEDPMVPPLKEMFKMTVDPEDAPDK+EK+RIDF+ GVPVKVTNHDDGTVKT+ LELFLYLN+LAGKHGVGRIDIVENRFVGIKSRGVYETPGGQILR AHMDLEGLC+DREVLRLKEGHQLEFSRLCYNGFWFAPEMELT A+ID+TQ+ V GGVELSLYKGNVTVLGRESP+SLYSADLASM+IEGG
Sbjct:    1 MAGKPKCVLAYSGGLDTSVILVWLIEKGFDVICYCANVGQLKEDFDKVREKALKCGASKVYIEDLREEFVKDYVFWAVKANAQYEGRYLLGTSLARPVIAKRQVEIAQKEGAKWLSHGATGKGNDQVRFELCAQALDAAIQTLAPWRETEFIERFKGRQDLLDYAAAHNIQVEATKKASYSVDENLYHTSYESGMLEDPMVPPLKEMFKMTVDPEDAPDKAEKVRIDFEEGVPVKVTNHDDGTVKTEPLELFLYLNELAGKHGVGRIDIVENRFVGIKSRGVYETPGGQILRVAHMDLEGLCVDREVLRLKEGHQLEFSRLCYNGFWFAPEMELTKASIDFTQRRVAGGVELSLYKGNVTVLGRESPYSLYSADLASMEIEGG 383          
The following BLAST results are available for this feature:
BLAST of NO05G00910.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853695.12.100e-20992.95argininosuccinate synthetase [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G00910NO05G00910Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G00910.1NO05G00910.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G00910.1.cds1NO05G00910.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00910.1.cds2NO05G00910.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00910.1.cds3NO05G00910.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00910.1.cds4NO05G00910.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00910.1.cds5NO05G00910.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00910.1.cds6NO05G00910.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G00910.1 ID=NO05G00910.1|Name=NO05G00910.1|organism=Nannochloropsis oceanica|type=mRNA|length=1858bp
GCTGGCGACAGTTGTGGATGGCTTCAGGGCGAGGAGGCTATGGCGGCGGT
GGTTTCTTTGTGTCATTTCCTTTCCTCACAGTCAGATTTCTGATTTTATG
ACAACAAGATGATGCGTTATATAACTCCAGTCATGTCCATGGCTTTATCC
CAGCATCTGAGCCTTTGCATTCCCTTATCATGCAACATACACACAGATCT
ATCCATCCAATCAACCCCCAAACCATGGCCGAGAAGCCCAAGTGCGTTCT
AGCATACAGCGGTGGCTTGGATACGTCTGTAATCCTCGTCTGGCTCATTG
AAAAGGGTTTCGATGTCATTTGCTATTGCGCCAATGTTGGCCAGTATAAA
GAGGACTTTGAGAAGGTCCGAGAGAAGGCCATGAAGTGTGGTGCATCCAA
GGTGTACATTGAGGATCTTCGCGAGGAGTTTGTGAAGGAGTACGTCTTTT
GGGCTGTCAAGGCCAACGCCCAATATGAAGGCCGCTACCTCCTCGGCACC
TCCCTCGCCCGTCCTGTTATCGCCAAGCGCCAAGTCGAGATTGCTCAAAA
AGAGGGGGCGAAGTGGTTGTCGCACGGGGCCACCGGGAAAGGAAACGACC
AAGTGCGGTTCGAGTTGTGTGCTCTGGCGTTGGATGCCACCATTCAGACG
TTAGCCCCCTGGAGGGAAAAGGAGTTCATTGAGCAGTTTAAGGGACGACA
GGACCTGTTGGATTACGCGGCGGCACATAACATCCAGGTGGAAGCGACCA
AGAAAGCCCCTTACTCCGTGGACGAGAACCTCTACCACACGTCCTACGAG
AGCGGGATGCTCGAAGACCCCATGGTGCCCCCTCTCAAGGAGATGTTCAA
GATGACGGTCGACCCCGAGGATGCCCCTGATAAGTCCGAGAAAATCCGCA
TTGACTTCCAGGCTGGGGTGCCCGTGAAGGTGACCAACCACGACGACGGC
ACGGTGAAGACGGACGCGCTGGAGCTGTTTTTGTACCTAAATGACCTGGC
TGGGAAGCACGGCGTAGGGCGCATAGACATAGTGGAGAATCGCTTTGTTG
GCATTAAATCCCGGGGGGTGTATGAGACCCCGGGGGGTCAGATTCTGCGG
GAGGCGCATATGGACTTGGAAGGGTTGTGCATTGACCGAGAGGTGCTGCG
GTTGAAGGAAGGGCACCAGTTGGAGTTTTCCCGCCTGTGTTACAACGGGT
TTTGGTTCGCGCCTGAAATGGAGTTAACCATGGCAGCGATTGACTGGACG
CAGAAGCACGTGACGGGAGGAGTGGAGTTGAGTCTGTACAAGGGGAATGT
GACGGTGCTGGGACGAGAGAGTCCGTTTTCGCTATACTCGGCGGATTTGG
CGAGCATGGATATTGAGGGGGGGGTTCGGCGTTTGATTACGACCCGATGG
ATGCCCAGGGATTTATTCGTATTAATGGTGTGAGGCTCAAGGCGTACAAT
GCGCTGCAGAGGACGTTTCAGAAGTAATCATATTGAGTGATGGGGAGGGA
GAAGAGGACCGGGACGGAGGAGGACTGCTGGAAGACACAGGTGGAGGCAA
ACGTGACGAAAGCAGAACGTAGAAATGCAAGAGACGAGGAAGGGGTAAGA
GAGGAAAGAGCAGAAGGAGAAAGATTAAGTTACAGAGGGGAGAAAGGAGT
AATTGCATATCGGGAAATGCAAAGAAAAACGTTTTTGAGGAGAGTGGACG
ATGAGTACTACAACCATCGAATGTGTCGCGGTGCCGGCGATATGAGTGAG
TTTTGGAATGGAGGCTTCGGAAGGAGACAGTTGTCTGAGTCACTCGAGCA
AAAGCACAACACAACATAATATGAATGCTTTGAAGAACTACGCGAGAGTC
CTTGCAGG
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protein sequence of NO05G00910.1

>NO05G00910.1-protein ID=NO05G00910.1-protein|Name=NO05G00910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=418bp
MQHTHRSIHPINPQTMAEKPKCVLAYSGGLDTSVILVWLIEKGFDVICYC
ANVGQYKEDFEKVREKAMKCGASKVYIEDLREEFVKEYVFWAVKANAQYE
GRYLLGTSLARPVIAKRQVEIAQKEGAKWLSHGATGKGNDQVRFELCALA
LDATIQTLAPWREKEFIEQFKGRQDLLDYAAAHNIQVEATKKAPYSVDEN
LYHTSYESGMLEDPMVPPLKEMFKMTVDPEDAPDKSEKIRIDFQAGVPVK
VTNHDDGTVKTDALELFLYLNDLAGKHGVGRIDIVENRFVGIKSRGVYET
PGGQILREAHMDLEGLCIDREVLRLKEGHQLEFSRLCYNGFWFAPEMELT
MAAIDWTQKHVTGGVELSLYKGNVTVLGRESPFSLYSADLASMDIEGGVR
RLITTRWMPRDLFVLMV*
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mRNA from alignment at chr5:280057..282931+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G00910.1 ID=NO05G00910.1|Name=NO05G00910.1|organism=Nannochloropsis oceanica|type=mRNA|length=2875bp|location=Sequence derived from alignment at chr5:280057..282931+ (Nannochloropsis oceanica)
GCTGGCGACAGTTGTGGATGGCTTCAGGGCGAGGAGGCTATGGCGGCGGT GGTTTCTTTGTGTCATTTCCTTTCCTCACAGTCAGATTTCTGATTTTATG ACAACAAGATGATGCGTTATATAACTCCAGTCATGTCCATGGCTTTATCC CAGCATCTGAGCCTTTGCATTCCCTTATCATGCAACATACACACAGATCT ATCCATCCAATCAACCCCCAAACCATGGCCGAGAAGCCCAAGTGCGTTCT AGCATACAGCGGTGGCTTGGATACGTCTGTAATCCTCGTCTGGCTCATTG AAAAGGTACGTTGTAACCGAATTAGCGTGCGGATGCGCCTGATTGTTTCG GAGGTGCATTTTTAGTTTTAGCCTCCCCACCCACTCCAGCCTTATGTCCT CACCGAACCTTTCTTGTTTTCCTTCCAACGTAGGGTTTCGATGTCATTTG CTATTGCGCCAATGTTGGCCAGTATAAAGAGGACTTTGAGAAGGTCCGAG AGAAGGCCATGAAGTGTGGTGCATCCAAGGTAAGATTCGGTGGACTAAGA AGTGACGGCTGGCGGGAGAGTATCTTTTCTCAAAGTAAAGCGGGCGAACA TGTCGCATTACGCAAATAGCTCACATGCAAACATTCCCCAACATTCATCG CAATTGTCAATAGGTGTACATTGAGGATCTTCGCGAGGAGTTTGTGAAGG AGTACGTCTTTTGGGCTGTCAAGGTGAGCATTAGATGTGGGAATCTTGGC AGCAGGTCGACCTCCCCTTTTCTCTCTCGTGCCTTTTCCCTTCTTATCTC CCCGCCTATGGACCCGATCGAGAACAAATGGAGGGGTTAAAATTATGAAG GTAGTCTCCTTTATTTTGCGCATGAGCAGCGACATCCATTTCTCTCTTTT TATGGGTAACATAACATATAACCCCCCCACCCCCCTTCCTCCCTCCCTCC CTTCCTTCCCCTCTCCCTCCCCTCCCCCCTCCTCTTTCCACAGGCCAACG CCCAATATGAAGGCCGCTACCTCCTCGGCACCTCCCTCGCCCGTCCTGTT ATCGCCAAGCGCCAAGTCGAGATTGCTCAAAAAGAGGGGGCGAAGTGGTT GTCGCACGGGGCCACCGGGAAAGGAAACGACCAAGTGCGGTTCGAGTTGT GTGCTCTGGCGTTGGATGCCACCATTCAGACGTTAGCCCCCTGGAGGGAA AAGGAGTTCATTGAGCAGTTTAAGGGACGACAGGACCTGTTGGATTACGC GGCGGCACATAACATCCAGGTCCAGGAGGGAGGGAGGGACGGAGGGAGGG TCAGAGGGAGGGACGGAGGGCGTGAGGGGGTGCCCGCTTCCTTCTTTTTT TTCAAGAGAAGTTTTTTTCTTCCAGGAAAAATTAGCATTTCCTGAATATG AGGAAATATAAATAGCTTTCACTCATTCGTTATCCTCCCTCCCCCTCCAT TGACCAGGTGGAAGCGACCAAGAAAGCCCCTTACTCCGTGGACGAGAACC TCTACCACACGTCCTACGAGAGCGGGATGCTCGAAGACCCCATGGTGCCC CCTCTCAAGGAGATGTTCAAGATGACGGTCGACCCCGAGGATGCCCCTGA TAAGGTATTTCGTCGTCGTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTT TTTCTCTCTCTCTCTTTTTCTCTCTCTTTCTTTCTTCCTTTTCATTCCCC TTCCCCTCTTTCCTCCGCCCTCCCGCCCTCCCTGCGCCTCTTCTCCCGTT CTTCCTTTCCTCCTTCATGCCATGTTGTTTCCTTCACTAGGAATCGGCTG GTATTGAGAGGACAGACGAGCCCACAACAGGACCAAGTAAGCATCACAGA GTCACCTCTTTCCCTCCCACCCTCTTTCCCTCCCTCCCTCCTTTCCCCCA GTCCGAGAAAATCCGCATTGACTTCCAGGCTGGGGTGCCCGTGAAGGTGA CCAACCACGACGACGGCACGGTGAAGACGGACGCGCTGGAGCTGTTTTTG TACCTAAATGACCTGGCTGGGAAGCACGGCGTAGGGCGCATAGACATAGT GGAGAATCGCTTTGTTGGCATTAAATCCCGGGGGGTGTATGAGACCCCGG GGGGTCAGATTCTGCGGGAGGCGCATATGGACTTGGAAGGGTTGTGCATT GACCGAGAGGTGCTGCGGTTGAAGGAAGGGCACCAGTTGGAGTTTTCCCG CCTGTGTTACAACGGGTTTTGGTTCGCGCCTGAAATGGAGTTAACCATGG CAGCGATTGACTGGACGCAGAAGCACGTGACGGGAGGAGTGGAGTTGAGT CTGTACAAGGGGAATGTGACGGTGCTGGGACGAGAGAGTCCGTTTTCGCT ATACTCGGCGGATTTGGCGAGCATGGATATTGAGGGGGGGGTTCGGCGTT TGATTACGACCCGATGGATGCCCAGGGATTTATTCGTATTAATGGTGTGA GGCTCAAGGCGTACAATGCGCTGCAGAGGACGTTTCAGAAGTAATCATAT TGAGTGATGGGGAGGGAGAAGAGGACCGGGACGGAGGAGGACTGCTGGAA GACACAGGTGGAGGCAAACGTGACGAAAGCAGAACGTAGAAATGCAAGAG ACGAGGAAGGGGTAAGAGAGGAAAGAGCAGAAGGAGAAAGATTAAGTTAC AGAGGGGAGAAAGGAGTAATTGCATATCGGGAAATGCAAAGAAAAACGTT TTTGAGGAGAGTGGACGATGAGTACTACAACCATCGAATGTGTCGCGGTG CCGGCGATATGAGTGAGTTTTGGAATGGAGGCTTCGGAAGGAGACAGTTG TCTGAGTCACTCGAGCAAAAGCACAACACAACATAATATGAATGCTTTGA AGAACTACGCGAGAGTCCTTGCAGG
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Coding sequence (CDS) from alignment at chr5:280057..282931+

>NO05G00910.1 ID=NO05G00910.1|Name=NO05G00910.1|organism=Nannochloropsis oceanica|type=CDS|length=1254bp|location=Sequence derived from alignment at chr5:280057..282931+ (Nannochloropsis oceanica)
ATGCAACATACACACAGATCTATCCATCCAATCAACCCCCAAACCATGGC
CGAGAAGCCCAAGTGCGTTCTAGCATACAGCGGTGGCTTGGATACGTCTG
TAATCCTCGTCTGGCTCATTGAAAAGGGTTTCGATGTCATTTGCTATTGC
GCCAATGTTGGCCAGTATAAAGAGGACTTTGAGAAGGTCCGAGAGAAGGC
CATGAAGTGTGGTGCATCCAAGGTGTACATTGAGGATCTTCGCGAGGAGT
TTGTGAAGGAGTACGTCTTTTGGGCTGTCAAGGCCAACGCCCAATATGAA
GGCCGCTACCTCCTCGGCACCTCCCTCGCCCGTCCTGTTATCGCCAAGCG
CCAAGTCGAGATTGCTCAAAAAGAGGGGGCGAAGTGGTTGTCGCACGGGG
CCACCGGGAAAGGAAACGACCAAGTGCGGTTCGAGTTGTGTGCTCTGGCG
TTGGATGCCACCATTCAGACGTTAGCCCCCTGGAGGGAAAAGGAGTTCAT
TGAGCAGTTTAAGGGACGACAGGACCTGTTGGATTACGCGGCGGCACATA
ACATCCAGGTGGAAGCGACCAAGAAAGCCCCTTACTCCGTGGACGAGAAC
CTCTACCACACGTCCTACGAGAGCGGGATGCTCGAAGACCCCATGGTGCC
CCCTCTCAAGGAGATGTTCAAGATGACGGTCGACCCCGAGGATGCCCCTG
ATAAGTCCGAGAAAATCCGCATTGACTTCCAGGCTGGGGTGCCCGTGAAG
GTGACCAACCACGACGACGGCACGGTGAAGACGGACGCGCTGGAGCTGTT
TTTGTACCTAAATGACCTGGCTGGGAAGCACGGCGTAGGGCGCATAGACA
TAGTGGAGAATCGCTTTGTTGGCATTAAATCCCGGGGGGTGTATGAGACC
CCGGGGGGTCAGATTCTGCGGGAGGCGCATATGGACTTGGAAGGGTTGTG
CATTGACCGAGAGGTGCTGCGGTTGAAGGAAGGGCACCAGTTGGAGTTTT
CCCGCCTGTGTTACAACGGGTTTTGGTTCGCGCCTGAAATGGAGTTAACC
ATGGCAGCGATTGACTGGACGCAGAAGCACGTGACGGGAGGAGTGGAGTT
GAGTCTGTACAAGGGGAATGTGACGGTGCTGGGACGAGAGAGTCCGTTTT
CGCTATACTCGGCGGATTTGGCGAGCATGGATATTGAGGGGGGGGTTCGG
CGTTTGATTACGACCCGATGGATGCCCAGGGATTTATTCGTATTAATGGT
GTGA
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Synonyms
Publications