NO05G00880.2, NO05G00880.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G00880.2
Unique NameNO05G00880.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1661
Alignment locationchr5:272356..274572 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:272356..274572 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G00880.2 vs.
Match: EWM28214.1 (wd40 repeat-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 362.5 bits (929), Expect = 1.100e-96
Identity = 164/235 (69.79%), Postives = 185/235 (78.72%), Query Frame = 0 
Query:   15 FPSLKRHEHQAEASSVDWNLVGKNTFLSSSWDGSIKHWDPTRPSSLATYLGHDGSCVYNAVWSPRHATRFLSCAADGSVRVWDASLPPSLPPAMGLGGGGMEGGMVQVVRAHEGEVLTADWDKYNEWVVYSGGVDRSVKIWDLRRPSLPLSFLHGHGFAVRRLKASPHQGELIGSVSYDMSFRLWGAAREGGRVGEVWRCEYHTEFVQGLDFDLFMPGRIATCSWDRRVCVWRMP 250
            +P     EH AE SSV WN V K  FLS+SWDGSIK WDP  P+SL+TY GH G CVY  + SPRH  RFLSC  DGS+R+WD  LPPS   ++GLG    EGG VQVVRAHEGEVL+ADWDKY +++VY+GGVDRS+KIWDLRRPSLPL FLHGHG+AVRRLK SPHQ  ++GSVSYDMS R+WG  R GGR GE+WRCE HTEFVQGLDF LF PGRIATC WDRRVCVW +P
Sbjct:  116 YPVAHWQEHSAEVSSVHWNQVVKTNFLSASWDGSIKLWDPHHPTSLSTYCGHTG-CVYAGIHSPRHPHRFLSCGTDGSLRIWDTKLPPSHATSLGLGRA--EGGAVQVVRAHEGEVLSADWDKYQDFLVYTGGVDRSIKIWDLRRPSLPLGFLHGHGYAVRRLKTSPHQEGVLGSVSYDMSCRVWGPTRAGGRAGELWRCEEHTEFVQGLDFHLFWPGRIATCGWDRRVCVWTLP 347
The following BLAST results are available for this feature:
BLAST of NO05G00880.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28214.11.100e-9669.79wd40 repeat-containing protein [Nannochloropsis ga... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G00880NO05G00880Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G00880.2NO05G00880.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G00880.2.cds1NO05G00880.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00880.2.cds2NO05G00880.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G00880.2 ID=NO05G00880.2|Name=NO05G00880.2|organism=Nannochloropsis oceanica|type=mRNA|length=1661bp
ACAGGCAACACTTCAATCTAGGTTATTTTCTTGGGCTTGGGGATTTCCAG
ATCCCCATGTCCAGCCACAAAGCATCTTAGGGCACGCAACCGAAAAGCGA
CTCCGAAAAGTTCAAGCGCTGCTTCCTCCATCCTAATACCTGCGGCCCCT
GACAACGACAACCAACCATTCCTTCAAATTCAGGCTGGCCTCATGCCGCG
TCCTGGCGGATTTCCTCCGCAACCGGGTGGCCCGCCACCGGGAGGTCATG
GGCACAAACCAGGAGAGCCCGTGCCGGATGCAGTCTTTCATACGCAATTC
CAGTGCTGCTCGGTGGAATTCAGTCCTTTCCACGAAGGCCGCCTGGCAGT
GGCCACGGCTCAATACTTTGGGATCATTGGAAATGGCCGACAGTACATTT
TGGAAATGGGCCCTGATGGCCACTTACGCGAAAGCAGAAATTTCCTCACG
CAAGAAGGGCTGTACGACTGCTCCTGGAGTGAAGTGAATGAGAACCAGCT
CGTTTCTGCCTCGGCAGACGGTAGCCTAAAGCTGTGGGACACCATGACCT
CTGATGACTACCCCATCGCGCATTGAATATTCCCTCTCCATTCTCTTCCC
CTCCCTCAAAAGGCACGAACACCAAGCCGAAGCCTCGTCGGTTGACTGGA
ACTTGGTCGGTAAAAACACTTTTCTCTCGTCCTCGTGGGACGGCAGCATC
AAGCATTGGGACCCCACCCGTCCTTCCTCCCTCGCTACCTACCTCGGCCA
CGACGGGTCTTGCGTGTATAACGCGGTCTGGTCTCCACGCCACGCGACTC
GTTTCCTGTCCTGTGCTGCGGATGGCAGCGTCCGTGTGTGGGATGCCTCC
CTCCCTCCCTCCCTGCCCCCGGCTATGGGCTTGGGGGGAGGAGGGATGGA
GGGCGGAATGGTGCAGGTGGTAAGGGCGCATGAGGGGGAAGTGCTGACGG
CTGATTGGGACAAGTATAATGAGTGGGTCGTGTATTCGGGAGGGGTGGAC
AGGTCCGTCAAAATTTGGGATTTGCGGCGACCCTCCCTCCCTCTCTCCTT
CCTCCATGGGCACGGGTTTGCGGTCCGTCGACTGAAGGCTAGTCCGCACC
AGGGGGAGTTGATAGGCTCGGTGTCGTACGATATGTCCTTTAGGCTGTGG
GGGGCAGCGAGGGAGGGGGGGAGGGTGGGGGAGGTGTGGCGGTGTGAGTA
CCACACGGAGTTTGTGCAAGGGCTGGACTTTGATTTGTTTATGCCTGGGA
GAATCGCAACATGCTCCTGGGACCGGCGGGTGTGCGTGTGGAGGATGCCA
TTTTTGTAGAGAAGAGAGGGATGTGAAGGGGGAGAAGGTCCTTTGTAAAG
GGAAGAAAGGAATGAGTGGGTGGAAGGGGGAATGGATGGGAGGAGGGTGT
TTTGTATAAGGAGGGAGGAAAGGAAGGAAGGAAGGAAGGAAGGAATAAAG
GAAGGAAGGAAAGAGAAAGAGAATATGCATAGAATGATTACACATGTGCA
GGAAAGCAATTGGCTCGCACATCTGACAAAACAATTGAGAAAATGTTGGT
GGTAAAGGAAAAGCACGACACGTAGTAGCATATGGAGTAAAGTGCACATA
ACACACCCGCAAGTTAAATCCTCCAATTCACTTGAGAAAGAAAACAAAGA
TGCAACATGAA
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protein sequence of NO05G00880.2

>NO05G00880.2-protein ID=NO05G00880.2-protein|Name=NO05G00880.2|organism=Nannochloropsis oceanica|type=polypeptide|length=252bp
MTTPSRIEYSLSILFPSLKRHEHQAEASSVDWNLVGKNTFLSSSWDGSIK
HWDPTRPSSLATYLGHDGSCVYNAVWSPRHATRFLSCAADGSVRVWDASL
PPSLPPAMGLGGGGMEGGMVQVVRAHEGEVLTADWDKYNEWVVYSGGVDR
SVKIWDLRRPSLPLSFLHGHGFAVRRLKASPHQGELIGSVSYDMSFRLWG
AAREGGRVGEVWRCEYHTEFVQGLDFDLFMPGRIATCSWDRRVCVWRMPF
L*
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mRNA from alignment at chr5:272356..274572-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G00880.2 ID=NO05G00880.2|Name=NO05G00880.2|organism=Nannochloropsis oceanica|type=mRNA|length=2217bp|location=Sequence derived from alignment at chr5:272356..274572- (Nannochloropsis oceanica)
ACAGGCAACACTTCAATCTAGGTTATTTTCTTGGGCTTGGGGATTTCCAG
ATCCCCATGTCCAGCCACAAAGCATCTTAGGGCACGCAACCGAAAAGCGA
CTCCGAAAAGTTCAAGCGCTGCTTCCTCCATCCTAATACCTGCGGCCCCT
GACAACGACAACCAACCATTCCTTCAAATTCAGGCTGGCCTCATGCCGCG
TCCTGGCGGATTTCCTCCGCAACCGGGTGGCCCGCCACCGGGAGGTCATG
GGCACAAACCAGGAGAGCCCGTGCCGGATGCAGTCTTTCATACGCAATTC
CAGTGCTGCTCGGTACGTAGTCGTACATGTACCTCTTTGTTTGTATGCTC
TGCTGTCCGTCAACGCCATGAGCCGTCGTGTATTTGTGTGCGTCTGTGCT
TCTAATCACAGTAATCCTCATCGAATTGGAATGCACTCACCCACTTCCTC
CCTCTTTCCCTCCCCACCCTGTCGCTTCAGGTGGAATTCAGTCCTTTCCA
CGAAGGCCGCCTGGCAGTGGCCACGGCTCAATACTTTGGGATCATTGGAA
ATGGCCGACAGTACATTTTGGAAGTAAGTCTTTGAACGTCATTCAGTCGT
GGAAAGTGCTGAATGAGAGAGGAATAATCAAGACTCCCTCCCTCCCTCTC
CTCCCCTCTGGCAACGAAGAGAATGCAATATGCTTTCAATGCTTTGAAGC
TTTGTTTTCTTACTAATAAAGAGCCGAGCGAATCCTTCACTCTGTGAATG
AGACAAATCGGAATTTAATCGTATCTACCTTCCTTCATCCTTCCCCTCCT
AGATGGGCCCTGATGGCCACTTACGCGAAAGCAGAAATTTCCTCACGCAA
GAAGGGCTGTACGACTGCTCCTGGAGTGAAGTGAATGAGAACCAGCTCGT
TTCTGCCTCGGCAGACGGTAGCCTAAAGCTGTGGGACACCATGACCTCTG
ATGACTACCCCATCGCGCATTGGTATGTGCCCTTCCTCCTCCTCTCTCTC
TCCCTCCTTTTCTCTTCGTAGTGGTCGCACGCTCCTCCTCTGTGTCCTTC
TTCTTTATCTTCTGAGAGTTCTAAGCGGAAAGGCAAGCGACGCTCCTACT
TCTTTCCGCTTCTTTTCGTAACCGCCTACAGAATATTCCCTCTCCATTCT
CTTCCCCTCCCTCAAAAGGCACGAACACCAAGCCGAAGCCTCGTCGGTTG
ACTGGAACTTGGTCGGTAAAAACACTTTTCTCTCGTCCTCGTGGGACGGC
AGCATCAAGCATTGGGACCCCACCCGTCCTTCCTCCCTCGCTACCTACCT
CGGCCACGACGGGTCTTGCGTGTATAACGCGGTCTGGTCTCCACGCCACG
CGACTCGTTTCCTGTCCTGTGCTGCGGATGGCAGCGTCCGTGTGTGGGAT
GCCTCCCTCCCTCCCTCCCTGCCCCCGGCTATGGGCTTGGGGGGAGGAGG
GATGGAGGGCGGAATGGTGCAGGTGGTAAGGGCGCATGAGGGGGAAGTGC
TGACGGCTGATTGGGACAAGTATAATGAGTGGGTCGTGTATTCGGGAGGG
GTGGACAGGTCCGTCAAAATTTGGGATTTGCGGCGACCCTCCCTCCCTCT
CTCCTTCCTCCATGGGCACGGGTTTGCGGTCCGTCGACTGAAGGCTAGTC
CGCACCAGGGGGAGTTGATAGGCTCGGTGTCGTACGATATGTCCTTTAGG
CTGTGGGGGGCAGCGAGGGAGGGGGGGAGGGTGGGGGAGGTGTGGCGGTG
TGAGTACCACACGGAGTTTGTGCAAGGGCTGGACTTTGATTTGTTTATGC
CTGGGAGAATCGCAACATGCTCCTGGGACCGGCGGGTGTGCGTGTGGAGG
ATGCCATTTTTGTAGAGAAGAGAGGGATGTGAAGGGGGAGAAGGTCCTTT
GTAAAGGGAAGAAAGGAATGAGTGGGTGGAAGGGGGAATGGATGGGAGGA
GGGTGTTTTGTATAAGGAGGGAGGAAAGGAAGGAAGGAAGGAAGGAAGGA
ATAAAGGAAGGAAGGAAAGAGAAAGAGAATATGCATAGAATGATTACACA
TGTGCAGGAAAGCAATTGGCTCGCACATCTGACAAAACAATTGAGAAAAT
GTTGGTGGTAAAGGAAAAGCACGACACGTAGTAGCATATGGAGTAAAGTG
CACATAACACACCCGCAAGTTAAATCCTCCAATTCACTTGAGAAAGAAAA
CAAAGATGCAACATGAA
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Coding sequence (CDS) from alignment at chr5:272356..274572-

>NO05G00880.2 ID=NO05G00880.2|Name=NO05G00880.2|organism=Nannochloropsis oceanica|type=CDS|length=756bp|location=Sequence derived from alignment at chr5:272356..274572- (Nannochloropsis oceanica)
ATGACTACCCCATCGCGCATTGAATATTCCCTCTCCATTCTCTTCCCCTC
CCTCAAAAGGCACGAACACCAAGCCGAAGCCTCGTCGGTTGACTGGAACT
TGGTCGGTAAAAACACTTTTCTCTCGTCCTCGTGGGACGGCAGCATCAAG
CATTGGGACCCCACCCGTCCTTCCTCCCTCGCTACCTACCTCGGCCACGA
CGGGTCTTGCGTGTATAACGCGGTCTGGTCTCCACGCCACGCGACTCGTT
TCCTGTCCTGTGCTGCGGATGGCAGCGTCCGTGTGTGGGATGCCTCCCTC
CCTCCCTCCCTGCCCCCGGCTATGGGCTTGGGGGGAGGAGGGATGGAGGG
CGGAATGGTGCAGGTGGTAAGGGCGCATGAGGGGGAAGTGCTGACGGCTG
ATTGGGACAAGTATAATGAGTGGGTCGTGTATTCGGGAGGGGTGGACAGG
TCCGTCAAAATTTGGGATTTGCGGCGACCCTCCCTCCCTCTCTCCTTCCT
CCATGGGCACGGGTTTGCGGTCCGTCGACTGAAGGCTAGTCCGCACCAGG
GGGAGTTGATAGGCTCGGTGTCGTACGATATGTCCTTTAGGCTGTGGGGG
GCAGCGAGGGAGGGGGGGAGGGTGGGGGAGGTGTGGCGGTGTGAGTACCA
CACGGAGTTTGTGCAAGGGCTGGACTTTGATTTGTTTATGCCTGGGAGAA
TCGCAACATGCTCCTGGGACCGGCGGGTGTGCGTGTGGAGGATGCCATTT
TTGTAG
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Synonyms
Publications