NO05G00870.1, NO05G00870.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G00870.1
Unique NameNO05G00870.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1180
Alignment locationchr5:269678..272110 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:269678..272110 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G00870.1 vs.
Match: EWM28239.1 (endothelial monocyte-activating polypeptide ii precursor pro-emap ii family protein [Nannochloropsis gaditana])

HSP 1 Score: 464.2 bits (1193), Expect = 3.800e-127
Identity = 252/366 (68.85%), Postives = 290/366 (79.23%), Query Frame = 0 
Query:    1 MKWLVLACVVIMLLRSVSGFTTRTLTPSTRKMTPMASR----TAHGFSRSSSRGRAKNGGIVRVPFLNQGLAKAAHTRLFSTTEDANPAPAAAAAADDAELQTL---WLDDRKTALRLSW---PPSSIPASSFSYRVSYTRDGIPNQVTAGGGSEDVVLRGLEGGSVYEVAVVRVEGESLKETMVGKTKVETAKAPEAPKGELTELSRLEIRTGKIVEVSRHPEADGLYVEKIDLGEPSGARTIVSGLVKYQTEEQLLGREVVVLANLKPRALKGITSHGMLLCASNEDHTVVMPLSPPAGVAVGELITFEGHVAAPEPPGNRAGKAFDRVADDLSAGEDMVATYKGIPFMTSKGPVKSGMKGSIS 357
            MK +VL C ++MLLRS S FTTR L   T+K    A +    T HG S +  R   ++ GI RVPFLNQGLA+AAHTRLFSTTED   AP+  +A+ + EL  L   W D  KT+LR+SW   P S+ P  S +YR+ Y+RDG+PN++T GG S + ++RGL  GS Y+VAVVRVE E L E +VG+ ++ET K  EAPKGELTELSRLEIRTGKI+E+SRHPEADGLYVEKIDLGE  G RTIVSGLVKYQTEE+LLGREVVVLANLKPRALKGITSHGMLLCASNEDHTVV PLSPP GVA+GELITFEGH AAPEPPGNRAGKAFDRVA++L AGEDM+ATYKGIPFMTSKGPV +GM GSIS
Sbjct:    1 MKRIVLMCALVMLLRSASAFTTRALVSGTQKSRMTARKALSVTRHGSSLTRKR---RHQGIDRVPFLNQGLAQAAHTRLFSTTED-TAAPSTTSASTEEELPQLLLHWSDSAKTSLRVSWTDTPSSTTP--SHAYRIDYSRDGVPNRLTLGGTSREAMIRGLHAGSQYDVAVVRVEREGLAEKVVGRARLETGKVVEAPKGELTELSRLEIRTGKILEISRHPEADGLYVEKIDLGEADGPRTIVSGLVKYQTEEELLGREVVVLANLKPRALKGITSHGMLLCASNEDHTVVKPLSPPPGVALGELITFEGHRAAPEPPGNRAGKAFDRVAEELGAGEDMIATYKGIPFMTSKGPVTTGMAGSIS 360
The following BLAST results are available for this feature:
BLAST of NO05G00870.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28239.13.800e-12768.85endothelial monocyte-activating polypeptide ii pre... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G00870NO05G00870Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G00870.1NO05G00870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G00870.1.cds1NO05G00870.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00870.1.cds2NO05G00870.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00870.1.cds3NO05G00870.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00870.1.cds4NO05G00870.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00870.1.cds5NO05G00870.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00870.1.cds6NO05G00870.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00870.1.cds7NO05G00870.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G00870.1 ID=NO05G00870.1|Name=NO05G00870.1|organism=Nannochloropsis oceanica|type=mRNA|length=1180bp
AACAGGGCGACGGCAACGAAGAAGACAAAGAGAAGCTTGAGATGAAGTGG
CTGGTGTTGGCGTGCGTCGTAATCATGTTGCTGCGTAGTGTTTCGGGCTT
TACCACGCGGACACTCACGCCCAGCACTCGCAAAATGACTCCCATGGCCT
CCAGGACTGCCCATGGCTTCTCCCGCTCAAGCAGCAGGGGAAGGGCCAAG
AACGGTGGGATTGTGCGCGTACCGTTCTTGAATCAAGGTCTGGCCAAGGC
GGCGCACACTAGGTTGTTCAGCACCACGGAGGACGCTAATCCTGCTCCGG
CTGCTGCAGCCGCGGCGGACGATGCTGAGCTGCAAACCCTCTGGCTCGAT
GACAGGAAGACAGCATTACGCCTGTCGTGGCCCCCCTCCTCCATCCCTGC
CTCGTCGTTCTCGTACCGCGTCAGCTACACGCGCGATGGGATACCAAATC
AAGTGACTGCAGGAGGGGGTTCGGAAGATGTAGTGTTGCGAGGGCTGGAG
GGAGGGAGCGTTTATGAAGTAGCGGTAGTGCGGGTGGAAGGAGAGTCATT
GAAGGAGACGATGGTGGGAAAGACCAAGGTGGAGACGGCTAAGGCACCTG
AGGCCCCCAAAGGGGAATTAACCGAGCTCTCTCGCCTCGAGATCCGCACG
GGCAAGATCGTGGAGGTTAGCCGACACCCCGAAGCGGATGGTTTGTACGT
GGAGAAGATTGATCTGGGAGAACCCTCCGGAGCCCGCACCATTGTCTCCG
GCCTGGTGAAATATCAAACAGAAGAGCAATTGCTCGGACGGGAGGTCGTC
GTCCTGGCCAACCTCAAGCCCCGTGCTCTGAAAGGCATCACATCCCACGG
CATGCTGCTGTGCGCTAGCAACGAAGATCACACCGTCGTCATGCCTCTCT
CGCCCCCTGCTGGCGTGGCAGTGGGGGAGCTGATTACCTTCGAAGGCCAC
GTGGCGGCACCAGAGCCCCCAGGAAATAGAGCGGGAAAGGCCTTTGATCG
CGTAGCGGACGATCTTTCTGCGGGGGAGGACATGGTTGCCACTTACAAGG
GCATTCCCTTTATGACGAGCAAGGGACCGGTGAAGAGTGGGATGAAGGGC
AGCATCTCCTAACCGATGAGAAGGGACGAGTGGGATGAAGGGCAGCATCT
CCTAACTGATGAGAAGGGACGAGTGGGATG
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protein sequence of NO05G00870.1

>NO05G00870.1-protein ID=NO05G00870.1-protein|Name=NO05G00870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=357bp
MKWLVLACVVIMLLRSVSGFTTRTLTPSTRKMTPMASRTAHGFSRSSSRG
RAKNGGIVRVPFLNQGLAKAAHTRLFSTTEDANPAPAAAAAADDAELQTL
WLDDRKTALRLSWPPSSIPASSFSYRVSYTRDGIPNQVTAGGGSEDVVLR
GLEGGSVYEVAVVRVEGESLKETMVGKTKVETAKAPEAPKGELTELSRLE
IRTGKIVEVSRHPEADGLYVEKIDLGEPSGARTIVSGLVKYQTEEQLLGR
EVVVLANLKPRALKGITSHGMLLCASNEDHTVVMPLSPPAGVAVGELITF
EGHVAAPEPPGNRAGKAFDRVADDLSAGEDMVATYKGIPFMTSKGPVKSG
MKGSIS*
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mRNA from alignment at chr5:269678..272110+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G00870.1 ID=NO05G00870.1|Name=NO05G00870.1|organism=Nannochloropsis oceanica|type=mRNA|length=2433bp|location=Sequence derived from alignment at chr5:269678..272110+ (Nannochloropsis oceanica)
AACAGGGCGACGGCAACGAAGAAGACAAAGAGAAGCTTGAGATGAAGTGG
CTGGTGTTGGCGTGCGTCGTAATCATGTTGCTGCGTAGTGTTTCGGGTAA
GTGCAATTCGTGTGCTGCTTGTGATGATCAGGATCGAGGAAGGGATGACT
CATTGCCGTATTATGCGCCGCTGCCGCTACCACTGATTCTGCAGCCGCGG
TTGCAGAGTTTGTCTGTTACCATACTACGAAGAGGTCGACTTGTTCACAC
TCCTCTGCGTTGTTATCTCGTCCTCTGACGAGCATCGTCATGATGACTCG
ATCGATCATTCCACTAAGTGCAAATCACCCCCTTTCCCTAATTCCATCCT
GTCCTTTCCTGTCAAGGCTTTACCACGCGGACACTCACGCCCAGCACTCG
CAAAATGACTCCCATGGCCTCCAGGACTGCCCATGGCTTCTCCCGCTCAA
GCAGCAGGGGAAGGGCCAAGAACGGTGGGATTGTGCGCGTACCGTTCTTG
AATCAAGGTCTGGCCAAGGCGGCGCACACTAGGTTGTTCAGCACCACGGA
GGACGCTAATCCTGCTCCGGCTGCTGCAGCCGCGGCGGACGATGCTGAGG
TAGGTTGATGAGAGGGAGGGAAGTGTGTGTATGCCTCTGTTTGTATATAT
ATATATATATATATATATATAGAGAGAGAGAGAGAGAGAGAGAGAGAGTG
ATGTACGAGGGTGTATGGTACGTTCTTTTTCGCCTGTGGTAGTTCCATAT
TCGGTCGCTCCTATCGTACGTCCTCCAACAAAGCCCGCTCCTCCTCCTCC
TTCTCCTCCTCCTTCTCCTCCTCCTTCTCCTCCTCTTCCCGCCTATAGCT
GCAAACCCTCTGGCTCGATGACAGGAAGACAGCATTACGCCTGTCGTGGC
CCCCCTCCTCCATCCCTGCCTCGTCGTTCTCGTACCGCGTCAGCTACACG
CGCGATGGGATACCAAATCAAGTGACTGCAGGAGGGGGTTCGGAAGATGT
AGTGTTGCGAGGGCTGGAGGGAGGGAGCGTTTATGAAGTAGCGGTAGTGC
GGGTGGAAGGAGAGTCATTGAAGGAGACGATGGTGGGAAAGACCAAGGTG
GAGACGGCTAAGGTACATAGATTGATTGCCTGCATGCCAGGGAGTATTAA
GAGCGAGGAGAGGAAGATGCGGGAGTCAATGTGGGCAAAATGCTCTCGCT
TCTGGTTGCCTTTTGTATGTCTCTCTCATTATGTATTTATGGCTTTGGAT
ACATCCCTGTTTATTTTCTGTCATCCGTTTTTCATGCCTTTCGGAAGCTC
GCGAAGTGTGACTCGATGAATATCACTAAGCCACCAATCATCCACTCTTT
GGAACCCCTCCAACAGGCACCTGAGGCCCCCAAAGGGGAATTAACCGAGC
TCTCTCGCCTCGAGATCCGCACGGGCAAGATCGTGGAGGTTAGCCGACAC
CCCGAAGCGGATGGTTTGTACGTGGAGAAGATTGATCTGGGGTGAGTTTA
TTTGGTCATTGATTTTAAGCACTTTGTAATTTTAATGTTTTGATGCTGGC
GTTATCATAAGTTGGTGGATTTGTCACGATTAACACAGCCCTCCCTCCCT
CCCTCCCAACCTCCTCCCCCCCCCCCCCAGAGAACCCTCCGGAGCCCGCA
CCATTGTCTCCGGCCTGGTGAAATATCAAACAGAAGAGCAATTGCTCGGA
CGGGAGGTCGTCGTCCTGGCCAACCTCAAGCCCCGTGCTCTGAAAGGTAC
GTGTCACCCCTTCCCTCCCTCCCCACCTTCCGGCCCTCTGGGCATTAACC
CTCTTTGTTCCCTCCCTCCCTCCCTTCCTCGCTCGTTCCTCCTTCCCAGG
CATCACATCCCACGGCATGCTGCTGTGCGCTAGCAACGAAGATCACACCG
TCGTCATGCCTCTCTCGCCCCCTGCTGGCGTGGCAGTGGGGGAGCTGATT
ACCTTCGAAGGCCACGTGGCGGCACCAGAGCCCCCAGGAAATAGAGCGGG
AAAGGCCTTTGATCGCGTAGCGGACGATCTTTCTGCGGGGGAGGTGCGTC
TTCCGTTTCTTTTGATTTGATTTTTAAAAAAATTGTCTGGGCTTCTCATG
TATAAATGTAAATTGCCTTTTTCAGATAGTTTCATTCTTCGTCTCGCTTT
AATCGATCTACCTCCCTCGCTGCCCTAGGGTATGGTTGACTCTTACCGTC
TTATTGGTGATGAGCTTTCCATTCTTCTTTTCTATTCTCACCCGCCCTCT
CTCCCTCTCTTCCTCCCTCCTTCCTTCCTAGGACATGGTTGCCACTTACA
AGGGCATTCCCTTTATGACGAGCAAGGGACCGGTGAAGAGTGGGATGAAG
GGCAGCATCTCCTAACCGATGAGAAGGGACGAGTGGGATGAAGGGCAGCA
TCTCCTAACTGATGAGAAGGGACGAGTGGGATG
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Coding sequence (CDS) from alignment at chr5:269678..272110+

>NO05G00870.1 ID=NO05G00870.1|Name=NO05G00870.1|organism=Nannochloropsis oceanica|type=CDS|length=1071bp|location=Sequence derived from alignment at chr5:269678..272110+ (Nannochloropsis oceanica)
ATGAAGTGGCTGGTGTTGGCGTGCGTCGTAATCATGTTGCTGCGTAGTGT
TTCGGGCTTTACCACGCGGACACTCACGCCCAGCACTCGCAAAATGACTC
CCATGGCCTCCAGGACTGCCCATGGCTTCTCCCGCTCAAGCAGCAGGGGA
AGGGCCAAGAACGGTGGGATTGTGCGCGTACCGTTCTTGAATCAAGGTCT
GGCCAAGGCGGCGCACACTAGGTTGTTCAGCACCACGGAGGACGCTAATC
CTGCTCCGGCTGCTGCAGCCGCGGCGGACGATGCTGAGCTGCAAACCCTC
TGGCTCGATGACAGGAAGACAGCATTACGCCTGTCGTGGCCCCCCTCCTC
CATCCCTGCCTCGTCGTTCTCGTACCGCGTCAGCTACACGCGCGATGGGA
TACCAAATCAAGTGACTGCAGGAGGGGGTTCGGAAGATGTAGTGTTGCGA
GGGCTGGAGGGAGGGAGCGTTTATGAAGTAGCGGTAGTGCGGGTGGAAGG
AGAGTCATTGAAGGAGACGATGGTGGGAAAGACCAAGGTGGAGACGGCTA
AGGCACCTGAGGCCCCCAAAGGGGAATTAACCGAGCTCTCTCGCCTCGAG
ATCCGCACGGGCAAGATCGTGGAGGTTAGCCGACACCCCGAAGCGGATGG
TTTGTACGTGGAGAAGATTGATCTGGGAGAACCCTCCGGAGCCCGCACCA
TTGTCTCCGGCCTGGTGAAATATCAAACAGAAGAGCAATTGCTCGGACGG
GAGGTCGTCGTCCTGGCCAACCTCAAGCCCCGTGCTCTGAAAGGCATCAC
ATCCCACGGCATGCTGCTGTGCGCTAGCAACGAAGATCACACCGTCGTCA
TGCCTCTCTCGCCCCCTGCTGGCGTGGCAGTGGGGGAGCTGATTACCTTC
GAAGGCCACGTGGCGGCACCAGAGCCCCCAGGAAATAGAGCGGGAAAGGC
CTTTGATCGCGTAGCGGACGATCTTTCTGCGGGGGAGGACATGGTTGCCA
CTTACAAGGGCATTCCCTTTATGACGAGCAAGGGACCGGTGAAGAGTGGG
ATGAAGGGCAGCATCTCCTAA
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Synonyms
Publications