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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr5 | genome | chr5:266768..269446 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G00860.1 vs.
Match: EWM28267.1 (gtp-binding protein [Nannochloropsis gaditana]) HSP 1 Score: 983.0 bits (2540), Expect = 4.700e-283 Identity = 518/682 (75.95%), Postives = 565/682 (82.84%), Query Frame = 0
Query: 14 PCGVCRRERRRRKRPASALHPPSSMRLTLLMAACVGWTASRSCVQAFVGPTAPLKSCSSRTSGFVQQHQTSSSITSLLQQQKISRSFSDAVTPLGMARGRSGTSSSGKGKQRTRKEASRPSNPSSPSSPSSKSQEEEDLLFFNSAMSGPVADDEDDDGSSLDEEGDDYVFNPADFPMLEGEIDFFGDMDGLEEESATPAAAAAAAATDVAPTTSVPKRAAKLPVIAVIGRPNVGKSTIVNRLCKTMSTEPDAIVYDYEGVTRDRIYRKAEWNGRMFEVVDTGGLIFDEDQDNLFAPQIREQALLALEESVAAILVVDGQVGVTTLDEEIAKFLRLKKNKPIYVVVNKCETQNMGEAMASMFWKLGLGEPYPVSGLHGTGVAEVLEAMLPHIYHVDEAERDEAIKVAIVGRPNVGKSSLLNRLYGKERAIVSDIAGTTRDAVDAMVEANGKMYKFIDTAGIRRRKKVEYGNEFLMVNRALKAVRRADVVLLVVDVVEGVNDQDKILAQRIADDGRACVIVANKWDAVEKDDKTFNEAVVYVKEELFAVSWADVLFTSALTGQRCHKVFEAVDKAAKAHRMRVKTSILNEVLGEALKWQRPPTVKSSQQGRVYYCNQVATEPPAVVVFCNNPKLFPDSYKRYLDRKFRESLDLTGTPIRWHFRGKKLRQLAKTGSPVPYGMPGS 696
P G R R RP A P +R + +AAC WT S VQ F P PL + VQ T+ S + +Q + R+ +T L MARG SG S+GKGKQR RK+ + P +P S S S + F SG + DD D + +D+EGDDYVFNPADFP+LEGEIDFFGD+DGLEE + A D + + K+A KLPV+AVIGRPNVGKSTIVNRLC+TMSTEPDAIVYDYEGVTRDRIYRKAEWNGR+FEVVDTGGLIFDEDQDNLFAPQIREQALLALEESVAAILVVDGQVGVTTLDEE+AKFLRL+KNKPI+V VNKCET NMGEAMASMFWKLGLGEP+PVSGLHGTGVAE+LE MLPHIY V+EAER+EAIKVAIVGRPNVGKSSLLNRLYGKERAIVSD+AGTTRDAVDA+VE NGK Y+FIDTAGIRRRKKVEYGNEFLMVNRALKAVRRADVVLLVVDVVEG+NDQDKILAQRIA+DGRACVIVANKWDAVEKDD+TFNEAVVYVKEELFAVSWADVLFTSALTGQRCHK+F+A+DKA+ AHR RVKTSILNEVLGEAL WQRPPTVKSSQQGRVYYCNQVATEPP+VVVFCNNPKLFPDSYKRYLDRKFRESLDLTGTPIRW+FRGKKLRQLAK GSPVPYGMPGS
Sbjct: 10 PSGSDNWRLRPRSRPGMAHRQPFHVRFFISVAACAAWTGRYSSVQGFAPPARPLHTKIEGMHCHVQPLSTAQSFSVHREQPHLDRTPKRKLTLLTMARGNSGGRSTGKGKQRGRKDTTAPGSPPSSDSSFPSSTRGD----FEEEGSGDIDDDVD---ALMDDEGDDYVFNPADFPLLEGEIDFFGDLDGLEETEES-RVLPGAQPLDTSGGITPKKKAVKLPVLAVIGRPNVGKSTIVNRLCRTMSTEPDAIVYDYEGVTRDRIYRKAEWNGRVFEVVDTGGLIFDEDQDNLFAPQIREQALLALEESVAAILVVDGQVGVTTLDEEVAKFLRLQKNKPIFVAVNKCETPNMGEAMASMFWKLGLGEPFPVSGLHGTGVAEMLERMLPHIYEVEEAEREEAIKVAIVGRPNVGKSSLLNRLYGKERAIVSDVAGTTRDAVDALVEVNGKSYRFIDTAGIRRRKKVEYGNEFLMVNRALKAVRRADVVLLVVDVVEGINDQDKILAQRIAEDGRACVIVANKWDAVEKDDRTFNEAVVYVKEELFAVSWADVLFTSALTGQRCHKIFDAIDKASAAHRQRVKTSILNEVLGEALVWQRPPTVKSSQQGRVYYCNQVATEPPSVVVFCNNPKLFPDSYKRYLDRKFRESLDLTGTPIRWYFRGKKLRQLAKQGSPVPYGMPGS 683
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G00860.1 ID=NO05G00860.1|Name=NO05G00860.1|organism=Nannochloropsis oceanica|type=mRNA|length=2424bp
AGATGTCCAACTCGTCGATGCTCCCGCCGTGCGACTCCATCCCCTGCGGC
GTTTGCAGAAGAGAGAGAAGGCGACGCAAACGCCCAGCTTCCGCCCTCCA
TCCCCCCTCTAGTATGCGCTTGACCCTTCTCATGGCGGCCTGTGTAGGGT
GGACAGCGAGTCGTTCGTGCGTGCAAGCATTCGTGGGGCCCACCGCACCT
CTCAAAAGTTGCAGCAGCCGGACCAGCGGCTTTGTCCAGCAGCATCAGAC
CTCTTCCTCTATCACCTCCCTCCTCCAGCAGCAGAAAATAAGCAGGAGCT
TTAGCGACGCCGTCACTCCCCTCGGTATGGCCCGTGGTCGCAGCGGCACC
AGCAGCAGCGGCAAGGGCAAGCAACGCACCAGGAAGGAAGCATCCCGCCC
TTCCAACCCTTCCTCTCCCTCCTCCCCCAGCAGCAAAAGCCAGGAGGAAG
AGGATTTACTATTTTTCAATAGTGCCATGAGTGGTCCTGTTGCCGATGAC
GAGGACGACGATGGCTCGTCGTTGGATGAGGAGGGAGACGACTACGTGTT
TAATCCTGCAGATTTCCCAATGCTCGAGGGAGAGATTGATTTCTTTGGGG
ATATGGATGGGTTGGAGGAAGAGTCTGCCACCCCTGCTGCAGCAGCAGCA
GCGGCGGCGACCGATGTGGCACCTACCACGTCCGTGCCTAAGCGTGCGGC
GAAGCTGCCGGTCATTGCAGTGATAGGCCGACCGAACGTCGGGAAATCCA
CGATTGTGAACCGACTTTGCAAGACCATGAGCACTGAGCCTGATGCCATC
GTGTACGACTACGAGGGGGTGACCCGTGATCGGATCTATAGGAAGGCGGA
GTGGAACGGGAGAATGTTCGAGGTAGTGGATACAGGCGGACTTATCTTTG
ATGAAGACCAGGACAACCTGTTTGCGCCGCAGATTCGGGAGCAGGCCTTG
TTGGCGCTTGAGGAGAGTGTGGCGGCTATACTGGTGGTCGATGGACAGGT
TGGGGTGACGACGTTGGACGAGGAAATTGCCAAATTCTTGAGGTTGAAGA
AGAACAAGCCGATTTATGTGGTGGTCAACAAGTGTGAGACACAGAACATG
GGCGAGGCCATGGCGTCCATGTTCTGGAAATTGGGTCTGGGGGAACCGTA
TCCCGTGAGTGGGCTGCACGGGACGGGGGTAGCGGAGGTGCTTGAAGCCA
TGTTGCCGCATATCTACCACGTGGACGAGGCGGAGAGGGATGAAGCGATT
AAGGTGGCCATTGTAGGTAGGCCGAACGTAGGGAAAAGCTCGCTTTTGAA
CCGGTTGTATGGGAAGGAGCGGGCGATTGTTTCGGACATTGCCGGCACGA
CTCGCGACGCGGTCGATGCAATGGTGGAGGCGAATGGAAAGATGTATAAG
TTTATTGATACGGCGGGGATCCGGCGGAGGAAGAAGGTGGAATATGGGAA
TGAGTTTTTGATGGTCAATCGGGCGTTGAAGGCGGTGAGACGCGCGGATG
TTGTCTTGCTGGTGGTGGATGTTGTGGAGGGGGTGAACGACCAGGACAAG
ATCCTGGCGCAGCGCATCGCGGACGATGGACGGGCGTGTGTGATTGTGGC
GAACAAGTGGGATGCAGTCGAGAAGGACGACAAGACGTTCAACGAGGCTG
TGGTCTACGTGAAAGAGGAGCTGTTCGCCGTCAGTTGGGCTGACGTCCTC
TTCACCTCCGCCCTGACGGGGCAGCGCTGCCACAAGGTTTTCGAGGCTGT
TGACAAGGCAGCAAAGGCCCATCGCATGCGCGTCAAGACCAGCATCTTGA
ATGAAGTCCTGGGCGAGGCGTTGAAATGGCAACGACCGCCCACCGTGAAA
AGCTCTCAGCAAGGCCGCGTGTACTATTGCAATCAGGTTGCGACCGAGCC
CCCCGCAGTGGTAGTGTTCTGCAACAACCCAAAGCTGTTCCCTGATTCCT
ATAAAAGGTATTTAGATCGTAAATTCCGGGAGTCTCTTGACTTGACTGGC
ACGCCGATTAGATGGCATTTCCGGGGGAAGAAATTGAGGCAGCTGGCTAA
GACTGGCAGCCCCGTGCCTTATGGCATGCCTGGGAGTTAAAGAGACGGAG
GGGAGGGAGAAGGGAGGAGGGAGAGAGGGGGGGAGTGGTGGGCACATACA
ATCGGTAGGTGGGAGGCCTGGGGGAGTTACGGAGGAGGGGATGGAGGACT
GGAGAGAAAGAGGGAGGGAGGGATTGAGATCTGCATGTAAGTAAATAACG
AAGGGGATGATCTAGGGAGAGGAAGGACTTGGGCGGAGGGGGTCTTGGTG
GTAAGAACACAGAGTGCATTCTGGATTAAGAAAAAGGGCACGATCGAGAT
GGCAAATAAAAATAAAGAGAAAGAAGGAAAAAGCTGAATGCAACGCACAG
CTACTTGACTTGGCAGTGATGACG back to topprotein sequence of NO05G00860.1 >NO05G00860.1-protein ID=NO05G00860.1-protein|Name=NO05G00860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=696bp
MSNSSMLPPCDSIPCGVCRRERRRRKRPASALHPPSSMRLTLLMAACVGW
TASRSCVQAFVGPTAPLKSCSSRTSGFVQQHQTSSSITSLLQQQKISRSF
SDAVTPLGMARGRSGTSSSGKGKQRTRKEASRPSNPSSPSSPSSKSQEEE
DLLFFNSAMSGPVADDEDDDGSSLDEEGDDYVFNPADFPMLEGEIDFFGD
MDGLEEESATPAAAAAAAATDVAPTTSVPKRAAKLPVIAVIGRPNVGKST
IVNRLCKTMSTEPDAIVYDYEGVTRDRIYRKAEWNGRMFEVVDTGGLIFD
EDQDNLFAPQIREQALLALEESVAAILVVDGQVGVTTLDEEIAKFLRLKK
NKPIYVVVNKCETQNMGEAMASMFWKLGLGEPYPVSGLHGTGVAEVLEAM
LPHIYHVDEAERDEAIKVAIVGRPNVGKSSLLNRLYGKERAIVSDIAGTT
RDAVDAMVEANGKMYKFIDTAGIRRRKKVEYGNEFLMVNRALKAVRRADV
VLLVVDVVEGVNDQDKILAQRIADDGRACVIVANKWDAVEKDDKTFNEAV
VYVKEELFAVSWADVLFTSALTGQRCHKVFEAVDKAAKAHRMRVKTSILN
EVLGEALKWQRPPTVKSSQQGRVYYCNQVATEPPAVVVFCNNPKLFPDSY
KRYLDRKFRESLDLTGTPIRWHFRGKKLRQLAKTGSPVPYGMPGS* back to topmRNA from alignment at chr5:266768..269446- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G00860.1 ID=NO05G00860.1|Name=NO05G00860.1|organism=Nannochloropsis oceanica|type=mRNA|length=2679bp|location=Sequence derived from alignment at chr5:266768..269446- (Nannochloropsis oceanica)
AGATGTCCAACTCGTCGATGCTCCCGCCGTGCGACTCCATCCCCTGCGGC
GTTTGCAGAAGAGAGAGAAGGCGACGCAAACGCCCAGCTTCCGCCCTCCA
TCCCCCCTCTAGTATGCGCTTGACCCTTCTCATGGCGGCCTGTGTAGGGT
GGACAGCGAGTCGTTCGTGCGTGCAAGCATTCGTGGGGCCCACCGCACCT
CTCAAAAGTTGCAGCAGCCGGACCAGCGGCTTTGTCCAGGTAGGAAGAGC
AGTGATTGGACGACAGGAGTGTTGGGGGAAGAGAGGCATAGCCAAAAGTG
TGCTGCTGCTGCGGCAGGCGCGAGATATTATTCACATGGAGAGAGTCTCC
GCATTTGAAGAGCGAGGGGATCCTATGTTTTAATGCTTTCTCGTCTTGTG
GCCCCATGAATATTTGTGGAATCATCATGCGACAGTCATTGCCTCCCATG
ATTGGCAAACCCACTTACCCACGCTCCGCCCCACCCATACACAGCAGCAT
CAGACCTCTTCCTCTATCACCTCCCTCCTCCAGCAGCAGAAAATAAGCAG
GAGCTTTAGCGACGCCGTCACTCCCCTCGGTATGGCCCGTGGTCGCAGCG
GCACCAGCAGCAGCGGCAAGGGCAAGCAACGCACCAGGAAGGAAGCATCC
CGCCCTTCCAACCCTTCCTCTCCCTCCTCCCCCAGCAGCAAAAGCCAGGA
GGAAGAGGATTTACTATTTTTCAATAGTGCCATGAGTGGTCCTGTTGCCG
ATGACGAGGACGACGATGGCTCGTCGTTGGATGAGGAGGGAGACGACTAC
GTGTTTAATCCTGCAGATTTCCCAATGCTCGAGGGAGAGATTGATTTCTT
TGGGGATATGGATGGGTTGGAGGAAGAGTCTGCCACCCCTGCTGCAGCAG
CAGCAGCGGCGGCGACCGATGTGGCACCTACCACGTCCGTGCCTAAGCGT
GCGGCGAAGCTGCCGGTCATTGCAGTGATAGGCCGACCGAACGTCGGGAA
ATCCACGATTGTGAACCGACTTTGCAAGACCATGAGCACTGAGCCTGATG
CCATCGTGTACGACTACGAGGGGGTGACCCGTGATCGGATCTATAGGAAG
GCGGAGTGGAACGGGAGAATGTTCGAGGTAGTGGATACAGGCGGACTTAT
CTTTGATGAAGACCAGGACAACCTGTTTGCGCCGCAGATTCGGGAGCAGG
CCTTGTTGGCGCTTGAGGAGAGTGTGGCGGCTATACTGGTGGTCGATGGA
CAGGTTGGGGTGACGACGTTGGACGAGGAAATTGCCAAATTCTTGAGGTT
GAAGAAGAACAAGCCGATTTATGTGGTGGTCAACAAGTGTGAGACACAGA
ACATGGGCGAGGCCATGGCGTCCATGTTCTGGAAATTGGGTCTGGGGGAA
CCGTATCCCGTGAGTGGGCTGCACGGGACGGGGGTAGCGGAGGTGCTTGA
AGCCATGTTGCCGCATATCTACCACGTGGACGAGGCGGAGAGGGATGAAG
CGATTAAGGTGGCCATTGTAGGTAGGCCGAACGTAGGGAAAAGCTCGCTT
TTGAACCGGTTGTATGGGAAGGAGCGGGCGATTGTTTCGGACATTGCCGG
CACGACTCGCGACGCGGTCGATGCAATGGTGGAGGCGAATGGAAAGATGT
ATAAGTTTATTGATACGGCGGGGATCCGGCGGAGGAAGAAGGTGGAATAT
GGGAATGAGTTTTTGATGGTCAATCGGGCGTTGAAGGCGGTGAGACGCGC
GGATGTTGTCTTGCTGGTGGTGGATGTTGTGGAGGGGGTGAACGACCAGG
ACAAGATCCTGGCGCAGCGCATCGCGGACGATGGACGGGCGTGTGTGATT
GTGGCGAACAAGTGGGATGCAGTCGAGAAGGACGACAAGACGTTCAACGA
GGCTGTGGTCTACGTGAAAGAGGAGCTGTTCGCCGTCAGTTGGGCTGACG
TCCTCTTCACCTCCGCCCTGACGGGGCAGCGCTGCCACAAGGTTTTCGAG
GCTGTTGACAAGGCAGCAAAGGCCCATCGCATGCGCGTCAAGACCAGCAT
CTTGAATGAAGTCCTGGGCGAGGCGTTGAAATGGCAACGACCGCCCACCG
TGAAAAGCTCTCAGCAAGGCCGCGTGTACTATTGCAATCAGGTTGCGACC
GAGCCCCCCGCAGTGGTAGTGTTCTGCAACAACCCAAAGCTGTTCCCTGA
TTCCTATAAAAGGTATTTAGATCGTAAATTCCGGGAGTCTCTTGACTTGA
CTGGCACGCCGATTAGATGGCATTTCCGGGGGAAGAAATTGAGGCAGCTG
GCTAAGACTGGCAGCCCCGTGCCTTATGGCATGCCTGGGAGTTAAAGAGA
CGGAGGGGAGGGAGAAGGGAGGAGGGAGAGAGGGGGGGAGTGGTGGGCAC
ATACAATCGGTAGGTGGGAGGCCTGGGGGAGTTACGGAGGAGGGGATGGA
GGACTGGAGAGAAAGAGGGAGGGAGGGATTGAGATCTGCATGTAAGTAAA
TAACGAAGGGGATGATCTAGGGAGAGGAAGGACTTGGGCGGAGGGGGTCT
TGGTGGTAAGAACACAGAGTGCATTCTGGATTAAGAAAAAGGGCACGATC
GAGATGGCAAATAAAAATAAAGAGAAAGAAGGAAAAAGCTGAATGCAACG
CACAGCTACTTGACTTGGCAGTGATGACG back to topCoding sequence (CDS) from alignment at chr5:266768..269446- >NO05G00860.1 ID=NO05G00860.1|Name=NO05G00860.1|organism=Nannochloropsis oceanica|type=CDS|length=2088bp|location=Sequence derived from alignment at chr5:266768..269446- (Nannochloropsis oceanica)
ATGTCCAACTCGTCGATGCTCCCGCCGTGCGACTCCATCCCCTGCGGCGT
TTGCAGAAGAGAGAGAAGGCGACGCAAACGCCCAGCTTCCGCCCTCCATC
CCCCCTCTAGTATGCGCTTGACCCTTCTCATGGCGGCCTGTGTAGGGTGG
ACAGCGAGTCGTTCGTGCGTGCAAGCATTCGTGGGGCCCACCGCACCTCT
CAAAAGTTGCAGCAGCCGGACCAGCGGCTTTGTCCAGCAGCATCAGACCT
CTTCCTCTATCACCTCCCTCCTCCAGCAGCAGAAAATAAGCAGGAGCTTT
AGCGACGCCGTCACTCCCCTCGGTATGGCCCGTGGTCGCAGCGGCACCAG
CAGCAGCGGCAAGGGCAAGCAACGCACCAGGAAGGAAGCATCCCGCCCTT
CCAACCCTTCCTCTCCCTCCTCCCCCAGCAGCAAAAGCCAGGAGGAAGAG
GATTTACTATTTTTCAATAGTGCCATGAGTGGTCCTGTTGCCGATGACGA
GGACGACGATGGCTCGTCGTTGGATGAGGAGGGAGACGACTACGTGTTTA
ATCCTGCAGATTTCCCAATGCTCGAGGGAGAGATTGATTTCTTTGGGGAT
ATGGATGGGTTGGAGGAAGAGTCTGCCACCCCTGCTGCAGCAGCAGCAGC
GGCGGCGACCGATGTGGCACCTACCACGTCCGTGCCTAAGCGTGCGGCGA
AGCTGCCGGTCATTGCAGTGATAGGCCGACCGAACGTCGGGAAATCCACG
ATTGTGAACCGACTTTGCAAGACCATGAGCACTGAGCCTGATGCCATCGT
GTACGACTACGAGGGGGTGACCCGTGATCGGATCTATAGGAAGGCGGAGT
GGAACGGGAGAATGTTCGAGGTAGTGGATACAGGCGGACTTATCTTTGAT
GAAGACCAGGACAACCTGTTTGCGCCGCAGATTCGGGAGCAGGCCTTGTT
GGCGCTTGAGGAGAGTGTGGCGGCTATACTGGTGGTCGATGGACAGGTTG
GGGTGACGACGTTGGACGAGGAAATTGCCAAATTCTTGAGGTTGAAGAAG
AACAAGCCGATTTATGTGGTGGTCAACAAGTGTGAGACACAGAACATGGG
CGAGGCCATGGCGTCCATGTTCTGGAAATTGGGTCTGGGGGAACCGTATC
CCGTGAGTGGGCTGCACGGGACGGGGGTAGCGGAGGTGCTTGAAGCCATG
TTGCCGCATATCTACCACGTGGACGAGGCGGAGAGGGATGAAGCGATTAA
GGTGGCCATTGTAGGTAGGCCGAACGTAGGGAAAAGCTCGCTTTTGAACC
GGTTGTATGGGAAGGAGCGGGCGATTGTTTCGGACATTGCCGGCACGACT
CGCGACGCGGTCGATGCAATGGTGGAGGCGAATGGAAAGATGTATAAGTT
TATTGATACGGCGGGGATCCGGCGGAGGAAGAAGGTGGAATATGGGAATG
AGTTTTTGATGGTCAATCGGGCGTTGAAGGCGGTGAGACGCGCGGATGTT
GTCTTGCTGGTGGTGGATGTTGTGGAGGGGGTGAACGACCAGGACAAGAT
CCTGGCGCAGCGCATCGCGGACGATGGACGGGCGTGTGTGATTGTGGCGA
ACAAGTGGGATGCAGTCGAGAAGGACGACAAGACGTTCAACGAGGCTGTG
GTCTACGTGAAAGAGGAGCTGTTCGCCGTCAGTTGGGCTGACGTCCTCTT
CACCTCCGCCCTGACGGGGCAGCGCTGCCACAAGGTTTTCGAGGCTGTTG
ACAAGGCAGCAAAGGCCCATCGCATGCGCGTCAAGACCAGCATCTTGAAT
GAAGTCCTGGGCGAGGCGTTGAAATGGCAACGACCGCCCACCGTGAAAAG
CTCTCAGCAAGGCCGCGTGTACTATTGCAATCAGGTTGCGACCGAGCCCC
CCGCAGTGGTAGTGTTCTGCAACAACCCAAAGCTGTTCCCTGATTCCTAT
AAAAGGTATTTAGATCGTAAATTCCGGGAGTCTCTTGACTTGACTGGCAC
GCCGATTAGATGGCATTTCCGGGGGAAGAAATTGAGGCAGCTGGCTAAGA
CTGGCAGCCCCGTGCCTTATGGCATGCCTGGGAGTTAA back to top
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