NO05G00840.1, NO05G00840.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G00840.1
Unique NameNO05G00840.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1497
Alignment locationchr5:262995..264693 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:262995..264693 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G00840.1 vs.
Match: EWM28288.1 (hypothetical protein Naga_100004g21 [Nannochloropsis gaditana])

HSP 1 Score: 258.8 bits (660), Expect = 2.900e-65
Identity = 174/435 (40.00%), Postives = 240/435 (55.17%), Query Frame = 0 
Query:   22 IRRSGSCSDKSNCAISQALGR---------SAAPSSPPSLCPTTLSAA----WKQHQHLLLYNSRRGMSSDSAPPSSFANPR---ASTSSPQEGVAPGSVAA--------EEEEKEKPPPFQDVAFPWRTAPRMHLSFLQAA-SKWLSDVFPQAFIRGLFYMSVGKLMEAPAEDLREILFRSTRFAFIQAVRGIFEGQCKTPPPAWEYTNDELNPPSSEWELGYPPLSEMMEPKLLEMYQDVVARFRANNREVRLELESIHPISMHDFKLVIGPPRGTPLPPGATKHTRGGVTVIVPQMPEGGEEMEGRGGGQEMGMGNNGQSFMAAVR-GSKNHMI-FQMAVTFKCRELFCVKDVETDEAVQGQEEMRETEHVCRFEIDFDNRAQLSQEWRLVDIDDW---MNGNVYLTGMPDDGEMSTE-RSGEGAHGRRKDD 426
            IR SGS  D S C   ++  R         S+ P + P +   T  A     W+  +    +N     SS SA  S+        AS SS   G    + AA        ++   +KP P Q+VAFPWR APR   +   A+  +W + +  QA +RG F   + K ME     ++E LFR  RFAFIQ VRGIF+GQCKTP P  E++ ++  PPSS W++GYPPLS MM+  L+  Y+DV+ARF+AN REVRLELESI P++MHD+++ +GPPRG+P      KH   G+T    Q  +    M                +  A VR  S+N  I F +AVTF+CRELFCV++ +T E +QG++ +RE +HV RF+++ D +AQ++Q+WR+VDID W     G V      + GE S + R G GA  R KDD
Sbjct:   16 IRPSGS--DTSRCKGGRSCNRPLRRAWRSLSSFPPTSPLVASITGKAERQHKWRSPRRACSHNLSSSPSSRSAASSTLKASEKIEASASSRLSGGGGEAAAASPVDITFIDDNASQKPLPVQEVAFPWRPAPRRPAAPRYASYGEWFTQILFQATLRGTFNKLLSKEMECLPRAVQERLFRYMRFAFIQGVRGIFDGQCKTPRPTLEFSREDPTPPSSTWDMGYPPLSAMMDEALVMTYKDVMARFKANKREVRLELESIVPVAMHDYRMSMGPPRGSPQRAAMAKHKFFGLTTFSDQPIDIDGPMT--------------DTLAAYVRVMSRNPRIGFHIAVTFRCRELFCVRNTDTGEVLQGEDGIREVDHVARFDVELDQKAQVTQDWRIVDIDGWTQAREGEVE-EDEEEKGEPSGDRREGGGAQERGKDD 433
The following BLAST results are available for this feature:
BLAST of NO05G00840.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28288.12.900e-6540.00hypothetical protein Naga_100004g21 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G00840NO05G00840Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G00840.1NO05G00840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G00840.1.cds1NO05G00840.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00840.1.cds2NO05G00840.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G00840.1 ID=NO05G00840.1|Name=NO05G00840.1|organism=Nannochloropsis oceanica|type=mRNA|length=1497bp
CAGACACAGGCGGTTAGCCATCTTCTGCTCCCCGCCGGCATATCACACCA
GCGCAGGGCAGCACTCAAAGCAAGCAAGCATGATGCGTAGCATGGCACAC
TCTGCGCGGCGAGGGCCGCTTGTCAATATGGGTTTGAGAGGTATTCGTAG
GAGCGGCAGCTGCAGCGACAAAAGCAACTGTGCCATCAGTCAGGCATTGG
GCCGCTCCGCAGCACCATCATCTCCTCCATCGCTGTGCCCCACCACCCTC
TCCGCTGCATGGAAGCAGCATCAGCACCTATTGCTCTACAATTCGCGACG
GGGCATGTCGTCTGATTCAGCCCCTCCCTCGTCGTTTGCCAATCCCAGGG
CAAGCACATCGTCACCGCAGGAGGGCGTCGCACCAGGAAGCGTAGCAGCT
GAGGAGGAAGAGAAGGAGAAGCCGCCTCCTTTCCAGGACGTGGCATTTCC
TTGGCGCACCGCCCCACGCATGCATCTCTCCTTCCTTCAAGCTGCCAGCA
AATGGCTCTCCGATGTATTTCCGCAGGCCTTCATCCGTGGACTGTTTTAC
ATGTCTGTTGGAAAGCTGATGGAGGCCCCTGCTGAAGACCTTCGTGAAAT
TCTCTTCCGGTCCACCCGCTTCGCCTTCATCCAAGCCGTCCGTGGGATCT
TTGAGGGGCAATGCAAGACCCCTCCTCCTGCGTGGGAGTATACCAACGAT
GAGCTCAACCCTCCTTCCTCCGAATGGGAATTGGGGTACCCGCCTCTGTC
TGAAATGATGGAGCCGAAGCTTTTAGAGATGTACCAAGACGTCGTTGCGC
GTTTCCGGGCCAACAATCGAGAGGTTCGGTTAGAATTGGAGAGCATCCAT
CCAATTTCAATGCATGATTTCAAGTTGGTCATTGGCCCTCCGCGGGGCAC
GCCCTTACCGCCGGGCGCGACGAAGCACACAAGGGGAGGCGTGACGGTGA
TTGTACCGCAAATGCCCGAGGGAGGGGAGGAGATGGAAGGGAGAGGAGGA
GGACAGGAGATGGGCATGGGAAACAATGGCCAGTCGTTCATGGCGGCGGT
GAGGGGGTCCAAAAACCATATGATTTTCCAGATGGCCGTGACTTTTAAGT
GCAGAGAGCTGTTCTGTGTGAAGGATGTAGAGACGGATGAGGCGGTTCAA
GGACAGGAAGAAATGCGGGAAACGGAGCATGTTTGTCGGTTTGAGATCGA
CTTTGATAATCGCGCGCAGTTGAGCCAAGAATGGCGGTTGGTGGACATCG
ACGACTGGATGAATGGGAATGTCTACCTCACCGGCATGCCCGACGATGGA
GAGATGTCAACCGAGAGAAGTGGGGAGGGTGCGCATGGTCGGCGGAAAGA
TGACTGAGTCCTATCGGAAGAAGAGAAGATTATTAGAGCGGAGGGATTGT
ACATTGAGGACCGAGGGTGAGAGAGAAATAGAGCGCCAAAGAAAAACCAA
GAGGGCAAAAATGTTGCAGACATATGACAAGATATAAGCTAAAAACT
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protein sequence of NO05G00840.1

>NO05G00840.1-protein ID=NO05G00840.1-protein|Name=NO05G00840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=426bp
MMRSMAHSARRGPLVNMGLRGIRRSGSCSDKSNCAISQALGRSAAPSSPP
SLCPTTLSAAWKQHQHLLLYNSRRGMSSDSAPPSSFANPRASTSSPQEGV
APGSVAAEEEEKEKPPPFQDVAFPWRTAPRMHLSFLQAASKWLSDVFPQA
FIRGLFYMSVGKLMEAPAEDLREILFRSTRFAFIQAVRGIFEGQCKTPPP
AWEYTNDELNPPSSEWELGYPPLSEMMEPKLLEMYQDVVARFRANNREVR
LELESIHPISMHDFKLVIGPPRGTPLPPGATKHTRGGVTVIVPQMPEGGE
EMEGRGGGQEMGMGNNGQSFMAAVRGSKNHMIFQMAVTFKCRELFCVKDV
ETDEAVQGQEEMRETEHVCRFEIDFDNRAQLSQEWRLVDIDDWMNGNVYL
TGMPDDGEMSTERSGEGAHGRRKDD*
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mRNA from alignment at chr5:262995..264693+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G00840.1 ID=NO05G00840.1|Name=NO05G00840.1|organism=Nannochloropsis oceanica|type=mRNA|length=1699bp|location=Sequence derived from alignment at chr5:262995..264693+ (Nannochloropsis oceanica)
CAGACACAGGCGGTTAGCCATCTTCTGCTCCCCGCCGGCATATCACACCA
GCGCAGGGCAGCACTCAAAGCAAGCAAGCATGATGCGTAGCATGGCACAC
TCTGCGCGGCGAGGGCCGCTTGTCAATATGGGTTTGAGAGGTATTCGTAG
GAGCGGCAGCTGCAGCGACAAAAGCAACTGTGCCATCAGTCAGGCATTGG
GCCGCTCCGCAGCACCATCATCTCCTCCATCGCTGTGCCCCACCACCCTC
TCCGCTGCATGGAAGCAGCATCAGCACCTATTGCTCTACAATTCGCGACG
GGGCATGTCGTCTGATTCAGCCCCTCCCTCGTCGTTTGCCAATCCCAGGG
CAAGCACATCGTCACCGCAGGAGGGCGTCGCACCAGGAAGCGTAGCAGCT
GAGGAGGAAGAGAAGGAGAAGCCGCCTCCTTTCCAGGACGTGGCATTTCC
TTGGCGCACCGCCCCACGCATGCATCTCTCCTTCCTTCAAGCTGCCAGCA
AATGGCTCTCCGATGTATTTCCGCAGGCCTTCATCCGTGGACTGTTTTAC
ATGTCTGTTGGAAAGCTGATGGAGGCCCCTGCTGAAGACCTTCGTGAAAT
TCTCTTCCGGTCCACCCGCTTCGCCTTCATCCAAGCCGTCCGTGGGATCT
TTGAGGGGCAATGCAAGACCCCTCCTCCTGCGTGGGAGTATACCAACGAT
GAGCTCAACCCTCCTTCCTCCGAATGGGAATTGGGGTACCCGCCTCTGTC
TGAAATGATGGAGCCGAAGCTTTTAGAGATGTACCAAGACGTCGTTGCGC
GTTTCCGGGCCAACAATCGAGAGGTTCGGTTAGAATTGGAGAGCATCCAT
CCAATTTCAATGCATGATTTCAAGTTGGTCATTGGCCCTCCGCGGGGCAC
GCCCTTACCGCCGGGCGCGACGAAGCACACAAGGGGAGGCGTGACGGTGA
TTGTACCGCAAATGCCCGAGGGAGGGGAGGAGATGGAAGGGAGAGGAGGA
GGACAGGAGATGGGCATGGGAAACAATGGCCAGTCGTTCATGGCGGCGGT
GAGGGGGTCCAAAAACCATATGATTTTCCAGATGGCCGTGACTTTTAAGT
GCAGAGAGCTGTTCTGTGTGAAGGATGTAGAGACGGATGAGGCGGTTCAA
GGACAGGAAGAAATGCGGGAAACGGAGCATGTTTGTCGGTTTGAGATCGA
CTTTGATAATCGCGCGCAGGTAAGGCATTTGGAGGGGAGGATGCAGAGAT
CTACGCCGTAACAGGGAGGGAGAGAGAGGGAATGAAACGGAAGCGGTAGG
GATAGATGGAATACTGTTTGGGAAGTTCCTGGTTGAAGTGTGATTCTTTC
TATGCACACGAATCTCACGATTTCCCCCTAATTTTGAAATCATATGCACA
TACACTTCGAACAACTCACAGTTGAGCCAAGAATGGCGGTTGGTGGACAT
CGACGACTGGATGAATGGGAATGTCTACCTCACCGGCATGCCCGACGATG
GAGAGATGTCAACCGAGAGAAGTGGGGAGGGTGCGCATGGTCGGCGGAAA
GATGACTGAGTCCTATCGGAAGAAGAGAAGATTATTAGAGCGGAGGGATT
GTACATTGAGGACCGAGGGTGAGAGAGAAATAGAGCGCCAAAGAAAAACC
AAGAGGGCAAAAATGTTGCAGACATATGACAAGATATAAGCTAAAAACT
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Coding sequence (CDS) from alignment at chr5:262995..264693+

>NO05G00840.1 ID=NO05G00840.1|Name=NO05G00840.1|organism=Nannochloropsis oceanica|type=CDS|length=1278bp|location=Sequence derived from alignment at chr5:262995..264693+ (Nannochloropsis oceanica)
ATGATGCGTAGCATGGCACACTCTGCGCGGCGAGGGCCGCTTGTCAATAT
GGGTTTGAGAGGTATTCGTAGGAGCGGCAGCTGCAGCGACAAAAGCAACT
GTGCCATCAGTCAGGCATTGGGCCGCTCCGCAGCACCATCATCTCCTCCA
TCGCTGTGCCCCACCACCCTCTCCGCTGCATGGAAGCAGCATCAGCACCT
ATTGCTCTACAATTCGCGACGGGGCATGTCGTCTGATTCAGCCCCTCCCT
CGTCGTTTGCCAATCCCAGGGCAAGCACATCGTCACCGCAGGAGGGCGTC
GCACCAGGAAGCGTAGCAGCTGAGGAGGAAGAGAAGGAGAAGCCGCCTCC
TTTCCAGGACGTGGCATTTCCTTGGCGCACCGCCCCACGCATGCATCTCT
CCTTCCTTCAAGCTGCCAGCAAATGGCTCTCCGATGTATTTCCGCAGGCC
TTCATCCGTGGACTGTTTTACATGTCTGTTGGAAAGCTGATGGAGGCCCC
TGCTGAAGACCTTCGTGAAATTCTCTTCCGGTCCACCCGCTTCGCCTTCA
TCCAAGCCGTCCGTGGGATCTTTGAGGGGCAATGCAAGACCCCTCCTCCT
GCGTGGGAGTATACCAACGATGAGCTCAACCCTCCTTCCTCCGAATGGGA
ATTGGGGTACCCGCCTCTGTCTGAAATGATGGAGCCGAAGCTTTTAGAGA
TGTACCAAGACGTCGTTGCGCGTTTCCGGGCCAACAATCGAGAGGTTCGG
TTAGAATTGGAGAGCATCCATCCAATTTCAATGCATGATTTCAAGTTGGT
CATTGGCCCTCCGCGGGGCACGCCCTTACCGCCGGGCGCGACGAAGCACA
CAAGGGGAGGCGTGACGGTGATTGTACCGCAAATGCCCGAGGGAGGGGAG
GAGATGGAAGGGAGAGGAGGAGGACAGGAGATGGGCATGGGAAACAATGG
CCAGTCGTTCATGGCGGCGGTGAGGGGGTCCAAAAACCATATGATTTTCC
AGATGGCCGTGACTTTTAAGTGCAGAGAGCTGTTCTGTGTGAAGGATGTA
GAGACGGATGAGGCGGTTCAAGGACAGGAAGAAATGCGGGAAACGGAGCA
TGTTTGTCGGTTTGAGATCGACTTTGATAATCGCGCGCAGTTGAGCCAAG
AATGGCGGTTGGTGGACATCGACGACTGGATGAATGGGAATGTCTACCTC
ACCGGCATGCCCGACGATGGAGAGATGTCAACCGAGAGAAGTGGGGAGGG
TGCGCATGGTCGGCGGAAAGATGACTGA
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Synonyms
Publications