NO05G00830.1, NO05G00830.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO05G00830.1
Unique Name	NO05G00830.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2153
Alignment location	chr5:260670..262822 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr5	genome	chr5:260670..262822 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO05G00830.1 vs.

BLAST of NO05G00830.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO05G00830	NO05G00830	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO05G00830.1	NO05G00830.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO05G00830.1.cds1	NO05G00830.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr5:260670..262822+
coding sequence from alignment at chr5:260670..262822+

mRNA sequence

>NO05G00830.1 ID=NO05G00830.1|Name=NO05G00830.1|organism=Nannochloropsis oceanica|type=mRNA|length=2153bp
ATGCAGGAGGAGAGGTTGGCGGCAAGGAAGGCAGCGAAACTGGCGGCTCG
CGCGGCGGAGAGAGGAGGAGTGGGGAGGAAAAGAGGGAAGAGGAAGGGGA
AGAAGCAGAGAGACTCTTCTCCTTCCTCGTCTTTCTCGGATGGGGGAAGC
GACGGTAGTGACAAGGAGGAGGGGGAGGGAGGGAGGGAGGGAGGGGTGGA
GGGTAAGAGGAAGAGCAGGCGAACGACGGTAAGGAGGAGGGTCAAGGGAG
TGAACAGCAACACCAGCAGCAGTAGCAGCAGCAGCTCTTCCTCCTCCTCT
TCCTCTTCGTCGGAGAGCGAAACAGAAGACGGAGGGAGGTCGGATGGGGA
GGGAGTGGATGGGGTACCTCCGGCGAAACGAGCGCGTTTAGAAGGGGACG
AGGAAGGGACGAGGAAGTTGCGGGCGTTACTGACACGTTACTTTGATGAG
GGGAAGTATAAGGATGTCCGGGTGTCGGAAATTGTGGTGGTGGCGAAGGA
GGAGTGTGGGCTAGAGGGGGTGGAGGCGGCGGTGTTGAAGACAGTGGTGA
CTGCCATGTTCAAAGAGATCGCCTTGGGGAGGATGTGGAGGAAGGCGAGA
GAGGAGGAGAGAACGGCGAGGAGGGAGGAGAGGAGGAGGGAGAAGGAGGA
GAGGAGGAGGGAGAAGGAGGAGAGGAGGAGGGAGAAGGAGGAGGAACGGA
GGGAGAGGAGGGAGAGGGAGGCGGTGATCGCTGAGAGGAAGAAGAAGGTG
GCCGACGCAGCCAAGGCACGGCGGGCCGCCAATGCAACTGCGAAAAAGGC
TCGCGCTGCTTCTGCTGCTGCTGCTGCTGCGGCTGCTTCGTCCTCTTCCT
CTTCCTCCTCTGACGAGGAAGAAGCCGACCTGAGCGGAGCCCAAAAGAAG
AGGGCTGAGGAAGGAAAGGAGGGAGGGAAGGAGGTATTGCCCGTGAGCCG
TGCCGCGATGAGTACTTACTTGGAGGAGATGCTGGAGGGAGTGTCCCTCG
AACAAACCTCCGCCAAGACCATCATGACACGTCTGCGCGATCATTTTGAA
CTAAACCCCGAGGAGTACATGGCTGTGCGCGGACCAGCAAGGGAGATTCT
GTCAGACATTGTGACTCGGGCGATGAGCTTGAGCCAGTTGGAGGCGGAGG
AGGAGGGGGGGGAGACGATGAATATGAGAGTAGAGGTCGAGGGAGGGAGG
GAGGTAGGTAGGGGTCATGGGTCTTTGGGCTCCTTCGGCGCAGGGGTGGC
GAGTGTGGGGTCGGTAGGTGGGGGGATGATGTCGCCTGCAGATATGTTTT
TAGAACAGGCGTTTGCGGTGGTAGGAGGGGAAGGGGATGAGGAAGGAATG
GAGGGTGGGCGCCTTCAGACGACGGCGGAGGAAGTGGAAGAGGACATGGC
AGCGTTGATGGCAGATTTCGATGGGGAGGAGAACGGTGGGGAGGGGGAGC
GGGAGAGGGAGGGAGAGAAACTGTCGCAGCACGAGGGAAAGTGTGCTGTG
TCCATCCCACTGGATGGGGATTTCCAGGCGGGGGATGACGAGGGGGAGGC
TGACAAGGAGAACATGGCAGCGTCGTCGTCTCTGCCTGCTCTTGCACATG
CGGGCAAGGGCATAGCGACGAAAGAGGGCACCATAAGGCAGGAGGAAGGA
GAGAAGGACGGCATGATGCTGGCTGAGCAGGAGGAGGACGAGGAGACGGG
CATAGATGCCCGAATGGCGGTGGGTGGAGGGGTGTCGCAGGATTACTAGT
CGGGATGTGACGAGAGATATAGTGGGAGGGGAAAGGATCCCTGGGCATTG
GTGGATAGAGGGGCAGGTCGAGGAAAGGACGGGCAATAAATAGAGACTTT
CATGGAAAAGAAGTGAAGTTATACCGCGACGGCGAAAAGAATGAAAATAA
GTCTATACCCCTTCACGAAGGCGTGTAAAGCAAGAATCGATATTTCCCTT
CCACACAAGGCTCACCGCCATCTTTGCAACATTAACCTCCTGACTACATG
CCCCTCGTTACAGCTTTAATACCTGTTTACGGCATCCACCAGGCCTCTGT
CATGCTGGTTCGAGGCTGTTGTAGCGTCTTCATCCGCCATGGTGGAGGTT
TTTGGTCAGTCTTCTGAGCATTGATGACCTCAAAGTGCTTATGGGCCAGT
GTC

protein sequence of NO05G00830.1

>NO05G00830.1-protein ID=NO05G00830.1-protein|Name=NO05G00830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=583bp
MQEERLAARKAAKLAARAAERGGVGRKRGKRKGKKQRDSSPSSSFSDGGS
DGSDKEEGEGGREGGVEGKRKSRRTTVRRRVKGVNSNTSSSSSSSSSSSS
SSSSESETEDGGRSDGEGVDGVPPAKRARLEGDEEGTRKLRALLTRYFDE
GKYKDVRVSEIVVVAKEECGLEGVEAAVLKTVVTAMFKEIALGRMWRKAR
EEERTARREERRREKEERRREKEERRREKEEERRERREREAVIAERKKKV
ADAAKARRAANATAKKARAASAAAAAAAASSSSSSSSDEEEADLSGAQKK
RAEEGKEGGKEVLPVSRAAMSTYLEEMLEGVSLEQTSAKTIMTRLRDHFE
LNPEEYMAVRGPAREILSDIVTRAMSLSQLEAEEEGGETMNMRVEVEGGR
EVGRGHGSLGSFGAGVASVGSVGGGMMSPADMFLEQAFAVVGGEGDEEGM
EGGRLQTTAEEVEEDMAALMADFDGEENGGEGEREREGEKLSQHEGKCAV
SIPLDGDFQAGDDEGEADKENMAASSSLPALAHAGKGIATKEGTIRQEEG
EKDGMMLAEQEEDEETGIDARMAVGGGVSQDY*

mRNA from alignment at chr5:260670..262822+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO05G00830.1 ID=NO05G00830.1|Name=NO05G00830.1|organism=Nannochloropsis oceanica|type=mRNA|length=2153bp|location=Sequence derived from alignment at chr5:260670..262822+ (Nannochloropsis oceanica)
ATGCAGGAGGAGAGGTTGGCGGCAAGGAAGGCAGCGAAACTGGCGGCTCG
CGCGGCGGAGAGAGGAGGAGTGGGGAGGAAAAGAGGGAAGAGGAAGGGGA
AGAAGCAGAGAGACTCTTCTCCTTCCTCGTCTTTCTCGGATGGGGGAAGC
GACGGTAGTGACAAGGAGGAGGGGGAGGGAGGGAGGGAGGGAGGGGTGGA
GGGTAAGAGGAAGAGCAGGCGAACGACGGTAAGGAGGAGGGTCAAGGGAG
TGAACAGCAACACCAGCAGCAGTAGCAGCAGCAGCTCTTCCTCCTCCTCT
TCCTCTTCGTCGGAGAGCGAAACAGAAGACGGAGGGAGGTCGGATGGGGA
GGGAGTGGATGGGGTACCTCCGGCGAAACGAGCGCGTTTAGAAGGGGACG
AGGAAGGGACGAGGAAGTTGCGGGCGTTACTGACACGTTACTTTGATGAG
GGGAAGTATAAGGATGTCCGGGTGTCGGAAATTGTGGTGGTGGCGAAGGA
GGAGTGTGGGCTAGAGGGGGTGGAGGCGGCGGTGTTGAAGACAGTGGTGA
CTGCCATGTTCAAAGAGATCGCCTTGGGGAGGATGTGGAGGAAGGCGAGA
GAGGAGGAGAGAACGGCGAGGAGGGAGGAGAGGAGGAGGGAGAAGGAGGA
GAGGAGGAGGGAGAAGGAGGAGAGGAGGAGGGAGAAGGAGGAGGAACGGA
GGGAGAGGAGGGAGAGGGAGGCGGTGATCGCTGAGAGGAAGAAGAAGGTG
GCCGACGCAGCCAAGGCACGGCGGGCCGCCAATGCAACTGCGAAAAAGGC
TCGCGCTGCTTCTGCTGCTGCTGCTGCTGCGGCTGCTTCGTCCTCTTCCT
CTTCCTCCTCTGACGAGGAAGAAGCCGACCTGAGCGGAGCCCAAAAGAAG
AGGGCTGAGGAAGGAAAGGAGGGAGGGAAGGAGGTATTGCCCGTGAGCCG
TGCCGCGATGAGTACTTACTTGGAGGAGATGCTGGAGGGAGTGTCCCTCG
AACAAACCTCCGCCAAGACCATCATGACACGTCTGCGCGATCATTTTGAA
CTAAACCCCGAGGAGTACATGGCTGTGCGCGGACCAGCAAGGGAGATTCT
GTCAGACATTGTGACTCGGGCGATGAGCTTGAGCCAGTTGGAGGCGGAGG
AGGAGGGGGGGGAGACGATGAATATGAGAGTAGAGGTCGAGGGAGGGAGG
GAGGTAGGTAGGGGTCATGGGTCTTTGGGCTCCTTCGGCGCAGGGGTGGC
GAGTGTGGGGTCGGTAGGTGGGGGGATGATGTCGCCTGCAGATATGTTTT
TAGAACAGGCGTTTGCGGTGGTAGGAGGGGAAGGGGATGAGGAAGGAATG
GAGGGTGGGCGCCTTCAGACGACGGCGGAGGAAGTGGAAGAGGACATGGC
AGCGTTGATGGCAGATTTCGATGGGGAGGAGAACGGTGGGGAGGGGGAGC
GGGAGAGGGAGGGAGAGAAACTGTCGCAGCACGAGGGAAAGTGTGCTGTG
TCCATCCCACTGGATGGGGATTTCCAGGCGGGGGATGACGAGGGGGAGGC
TGACAAGGAGAACATGGCAGCGTCGTCGTCTCTGCCTGCTCTTGCACATG
CGGGCAAGGGCATAGCGACGAAAGAGGGCACCATAAGGCAGGAGGAAGGA
GAGAAGGACGGCATGATGCTGGCTGAGCAGGAGGAGGACGAGGAGACGGG
CATAGATGCCCGAATGGCGGTGGGTGGAGGGGTGTCGCAGGATTACTAGT
CGGGATGTGACGAGAGATATAGTGGGAGGGGAAAGGATCCCTGGGCATTG
GTGGATAGAGGGGCAGGTCGAGGAAAGGACGGGCAATAAATAGAGACTTT
CATGGAAAAGAAGTGAAGTTATACCGCGACGGCGAAAAGAATGAAAATAA
GTCTATACCCCTTCACGAAGGCGTGTAAAGCAAGAATCGATATTTCCCTT
CCACACAAGGCTCACCGCCATCTTTGCAACATTAACCTCCTGACTACATG
CCCCTCGTTACAGCTTTAATACCTGTTTACGGCATCCACCAGGCCTCTGT
CATGCTGGTTCGAGGCTGTTGTAGCGTCTTCATCCGCCATGGTGGAGGTT
TTTGGTCAGTCTTCTGAGCATTGATGACCTCAAAGTGCTTATGGGCCAGT
GTC

Coding sequence (CDS) from alignment at chr5:260670..262822+

>NO05G00830.1 ID=NO05G00830.1|Name=NO05G00830.1|organism=Nannochloropsis oceanica|type=CDS|length=1749bp|location=Sequence derived from alignment at chr5:260670..262822+ (Nannochloropsis oceanica)
ATGCAGGAGGAGAGGTTGGCGGCAAGGAAGGCAGCGAAACTGGCGGCTCG
CGCGGCGGAGAGAGGAGGAGTGGGGAGGAAAAGAGGGAAGAGGAAGGGGA
AGAAGCAGAGAGACTCTTCTCCTTCCTCGTCTTTCTCGGATGGGGGAAGC
GACGGTAGTGACAAGGAGGAGGGGGAGGGAGGGAGGGAGGGAGGGGTGGA
GGGTAAGAGGAAGAGCAGGCGAACGACGGTAAGGAGGAGGGTCAAGGGAG
TGAACAGCAACACCAGCAGCAGTAGCAGCAGCAGCTCTTCCTCCTCCTCT
TCCTCTTCGTCGGAGAGCGAAACAGAAGACGGAGGGAGGTCGGATGGGGA
GGGAGTGGATGGGGTACCTCCGGCGAAACGAGCGCGTTTAGAAGGGGACG
AGGAAGGGACGAGGAAGTTGCGGGCGTTACTGACACGTTACTTTGATGAG
GGGAAGTATAAGGATGTCCGGGTGTCGGAAATTGTGGTGGTGGCGAAGGA
GGAGTGTGGGCTAGAGGGGGTGGAGGCGGCGGTGTTGAAGACAGTGGTGA
CTGCCATGTTCAAAGAGATCGCCTTGGGGAGGATGTGGAGGAAGGCGAGA
GAGGAGGAGAGAACGGCGAGGAGGGAGGAGAGGAGGAGGGAGAAGGAGGA
GAGGAGGAGGGAGAAGGAGGAGAGGAGGAGGGAGAAGGAGGAGGAACGGA
GGGAGAGGAGGGAGAGGGAGGCGGTGATCGCTGAGAGGAAGAAGAAGGTG
GCCGACGCAGCCAAGGCACGGCGGGCCGCCAATGCAACTGCGAAAAAGGC
TCGCGCTGCTTCTGCTGCTGCTGCTGCTGCGGCTGCTTCGTCCTCTTCCT
CTTCCTCCTCTGACGAGGAAGAAGCCGACCTGAGCGGAGCCCAAAAGAAG
AGGGCTGAGGAAGGAAAGGAGGGAGGGAAGGAGGTATTGCCCGTGAGCCG
TGCCGCGATGAGTACTTACTTGGAGGAGATGCTGGAGGGAGTGTCCCTCG
AACAAACCTCCGCCAAGACCATCATGACACGTCTGCGCGATCATTTTGAA
CTAAACCCCGAGGAGTACATGGCTGTGCGCGGACCAGCAAGGGAGATTCT
GTCAGACATTGTGACTCGGGCGATGAGCTTGAGCCAGTTGGAGGCGGAGG
AGGAGGGGGGGGAGACGATGAATATGAGAGTAGAGGTCGAGGGAGGGAGG
GAGGTAGGTAGGGGTCATGGGTCTTTGGGCTCCTTCGGCGCAGGGGTGGC
GAGTGTGGGGTCGGTAGGTGGGGGGATGATGTCGCCTGCAGATATGTTTT
TAGAACAGGCGTTTGCGGTGGTAGGAGGGGAAGGGGATGAGGAAGGAATG
GAGGGTGGGCGCCTTCAGACGACGGCGGAGGAAGTGGAAGAGGACATGGC
AGCGTTGATGGCAGATTTCGATGGGGAGGAGAACGGTGGGGAGGGGGAGC
GGGAGAGGGAGGGAGAGAAACTGTCGCAGCACGAGGGAAAGTGTGCTGTG
TCCATCCCACTGGATGGGGATTTCCAGGCGGGGGATGACGAGGGGGAGGC
TGACAAGGAGAACATGGCAGCGTCGTCGTCTCTGCCTGCTCTTGCACATG
CGGGCAAGGGCATAGCGACGAAAGAGGGCACCATAAGGCAGGAGGAAGGA
GAGAAGGACGGCATGATGCTGGCTGAGCAGGAGGAGGACGAGGAGACGGG
CATAGATGCCCGAATGGCGGTGGGTGGAGGGGTGTCGCAGGATTACTAG

Synonyms

Publications