NO05G00760.1, NO05G00760.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G00760.1
Unique NameNO05G00760.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1527
Alignment locationchr5:244845..246433 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:244845..246433 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO05G00760.1 vs.
Match: EWM28263.1 (ornithine decarboxylase [Nannochloropsis gaditana])

HSP 1 Score: 805.8 bits (2080), Expect = 7.500e-230
Identity = 409/531 (77.02%), Postives = 440/531 (82.86%), Query Frame = 0
Query:    1 MAEVQVDTHVRRSSLDLSMADELSGCGAVLLGAGPLSPRVLHPPPTDALPTVRTLLEQKALHEGLEDAFFVADLGAIIRQHRKWQRCLPRVEPFYAIKCNTDPEVLRTLLPLCAGFDCASKGEIETMLALGVNPSNIIYANPCKPPEHVRYARDHGVHLMTFDNADELAKVKAINPNAKMVLRILTDDSKSVCRFGTKFGAHLPATLPLLQTARHLGMDVVGVSFHVGSGCQDPMAFDDAVRRAKRVFEEGARLG---------------------EDPDIHGKAEGSVTFEEIAAVLGKAIQTHFPDPAVRVIAEPGRFYVAPAFTLATTITSRRAVF------SDAMTAADDSKLEGRA-----SAAVAAGGGRATCAGGMMTTTTTTTTTATSAMMIDESGTEGSGKQADHQKMGLRQVQVSSEEKSFMYYVNDGVYGSFNCLLFDHAQAFPKVLAAKSRAVRHKESVWLGDWYECSVWGPTCDSMDCISKKTLLPELAIGDWLYFEEMGAYTLAAASRFNGFELSSV 500
            MAEVQVDTH+RRSSLDLSM+DELS CGAVLLG GPLSPRVLHPPPTD+LP+VRTLLE KALHEGLEDAFFVADLGA+IRQH+KWQRCLPRVEPFYA+KCNTDPEVLRTLLPLCAGFDCASKGEIETML +GV+PSNIIYANPCK PEH+RYARDHGVHLMTFDNADELAKVKAINP AKMVLRILTDDSKSVCRFGTKFGAHLPAT PLLQTARHLG+DVVGVSFHVGSGCQDPMAFDDAVRRAK+VFEEGARLG                     +DPDIHGKAEGSVTFE IAAVLGKAI THFPDPAVRVIAEPGR+YVAPAFTLATTITSRRAV+       D++ AA+DS L  RA       A    GGRA   GG               ++I+ESG EG  ++     +       + E+KSFMYYVNDGVYGSFNCLLFDHAQAFPKVL+AK+R VRHKES W+G WYECSVWGPTCDSMDCISKKTLLPE+ IGDWLYFEEMGAYTL+AASRFNGFELS V
Sbjct:    1 MAEVQVDTHLRRSSLDLSMSDELSPCGAVLLGPGPLSPRVLHPPPTDSLPSVRTLLEHKALHEGLEDAFFVADLGAVIRQHKKWQRCLPRVEPFYAVKCNTDPEVLRTLLPLCAGFDCASKGEIETMLGMGVSPSNIIYANPCKSPEHIRYARDHGVHLMTFDNADELAKVKAINPQAKMVLRILTDDSKSVCRFGTKFGAHLPATYPLLQTARHLGLDVVGVSFHVGSGCQDPMAFDDAVRRAKKVFEEGARLGYRFSLLDVGGGFPGSEKRHTADDPDIHGKAEGSVTFEAIAAVLGKAIYTHFPDPAVRVIAEPGRYYVAPAFTLATTITSRRAVYHPAVAAGDSLNAANDSTLPQRAVSMDCGPAEVGEGGRAD--GG-----------KPGGVLIEESGAEGPRQETAQGTLS------AGEDKSFMYYVNDGVYGSFNCLLFDHAQAFPKVLSAKARPVRHKESAWVGAWYECSVWGPTCDSMDCISKKTLLPEMMIGDWLYFEEMGAYTLSAASRFNGFELSHV 512          
The following BLAST results are available for this feature:
BLAST of NO05G00760.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28263.17.500e-23077.02ornithine decarboxylase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G00760NO05G00760Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G00760.1NO05G00760.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G00760.1.cds1NO05G00760.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00760.1.cds2NO05G00760.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G00760.1 ID=NO05G00760.1|Name=NO05G00760.1|organism=Nannochloropsis oceanica|type=mRNA|length=1527bp
ATGGCTGAGGTACAAGTCGACACGCACGTGCGCCGCTCCTCCCTTGACCT
TTCCATGGCTGACGAGCTTTCCGGCTGTGGCGCTGTCCTTCTTGGCGCTG
GGCCCTTGTCTCCACGTGTCCTTCACCCGCCTCCCACCGACGCCCTCCCT
ACCGTCCGCACCTTGCTAGAGCAAAAGGCCTTGCACGAGGGGTTGGAAGA
TGCCTTCTTTGTCGCTGACCTTGGGGCGATTATTCGCCAGCACCGCAAGT
GGCAACGCTGCCTTCCCCGCGTGGAGCCCTTTTACGCCATCAAGTGCAAC
ACCGACCCCGAGGTCTTGCGGACCCTCCTCCCCCTCTGCGCTGGCTTCGA
CTGCGCGAGCAAGGGAGAGATTGAGACGATGCTTGCCCTGGGTGTCAACC
CGTCCAACATTATCTATGCCAACCCCTGCAAGCCCCCGGAGCATGTGCGG
TATGCCCGCGACCATGGTGTGCACCTTATGACGTTCGACAACGCCGATGA
GCTGGCCAAGGTAAAGGCCATCAACCCGAATGCCAAGATGGTCCTGCGAA
TCCTGACTGATGACTCGAAGTCGGTCTGTCGCTTCGGTACCAAATTTGGA
GCCCATTTGCCCGCTACCCTGCCTTTGTTGCAGACGGCGCGCCACTTAGG
GATGGATGTGGTGGGGGTTTCTTTTCACGTTGGTTCCGGGTGCCAGGACC
CCATGGCTTTTGATGACGCAGTGCGCCGAGCGAAGAGGGTGTTCGAAGAA
GGGGCACGGCTCGGTGAGGATCCGGACATTCACGGAAAGGCCGAGGGAAG
TGTAACATTCGAGGAGATAGCCGCGGTGTTGGGCAAGGCGATTCAGACGC
ATTTCCCAGACCCGGCTGTACGGGTGATTGCGGAGCCGGGCCGCTTTTAT
GTGGCACCGGCGTTTACGCTCGCTACCACCATTACATCACGACGAGCTGT
TTTCTCTGATGCGATGACGGCGGCGGATGACTCGAAGCTCGAAGGAAGAG
CATCCGCGGCTGTGGCAGCTGGGGGAGGGCGAGCGACATGTGCGGGTGGA
ATGATGACGACGACCACCACCACCACCACCACGGCCACGAGCGCGATGAT
GATTGACGAAAGCGGGACAGAAGGAAGCGGGAAGCAGGCGGATCACCAGA
AGATGGGGCTGCGCCAGGTGCAGGTTTCGAGCGAGGAGAAGAGTTTTATG
TATTATGTGAATGATGGGGTGTATGGGTCATTCAATTGCCTGTTGTTTGA
CCACGCGCAGGCCTTCCCGAAGGTGCTCGCGGCCAAGTCGCGCGCGGTCC
GTCATAAGGAGAGTGTGTGGTTGGGGGATTGGTATGAATGCTCCGTATGG
GGCCCCACGTGCGATAGCATGGATTGCATCAGCAAGAAGACCTTGCTGCC
TGAGTTGGCGATTGGGGATTGGTTGTATTTTGAGGAGATGGGGGCTTACA
CGCTCGCGGCGGCGTCGAGGTTCAACGGCTTTGAGCTCTCCTCGGTGTTT
TACACCAACACAGAGGCGATGCCATGA
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protein sequence of NO05G00760.1

>NO05G00760.1-protein ID=NO05G00760.1-protein|Name=NO05G00760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=509bp
MAEVQVDTHVRRSSLDLSMADELSGCGAVLLGAGPLSPRVLHPPPTDALP
TVRTLLEQKALHEGLEDAFFVADLGAIIRQHRKWQRCLPRVEPFYAIKCN
TDPEVLRTLLPLCAGFDCASKGEIETMLALGVNPSNIIYANPCKPPEHVR
YARDHGVHLMTFDNADELAKVKAINPNAKMVLRILTDDSKSVCRFGTKFG
AHLPATLPLLQTARHLGMDVVGVSFHVGSGCQDPMAFDDAVRRAKRVFEE
GARLGEDPDIHGKAEGSVTFEEIAAVLGKAIQTHFPDPAVRVIAEPGRFY
VAPAFTLATTITSRRAVFSDAMTAADDSKLEGRASAAVAAGGGRATCAGG
MMTTTTTTTTTATSAMMIDESGTEGSGKQADHQKMGLRQVQVSSEEKSFM
YYVNDGVYGSFNCLLFDHAQAFPKVLAAKSRAVRHKESVWLGDWYECSVW
GPTCDSMDCISKKTLLPELAIGDWLYFEEMGAYTLAAASRFNGFELSSVF
YTNTEAMP*
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mRNA from alignment at chr5:244845..246433-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G00760.1 ID=NO05G00760.1|Name=NO05G00760.1|organism=Nannochloropsis oceanica|type=mRNA|length=1589bp|location=Sequence derived from alignment at chr5:244845..246433- (Nannochloropsis oceanica)
ATGGCTGAGGTACAAGTCGACACGCACGTGCGCCGCTCCTCCCTTGACCT TTCCATGGCTGACGAGCTTTCCGGCTGTGGCGCTGTCCTTCTTGGCGCTG GGCCCTTGTCTCCACGTGTCCTTCACCCGCCTCCCACCGACGCCCTCCCT ACCGTCCGCACCTTGCTAGAGCAAAAGGCCTTGCACGAGGGGTTGGAAGA TGCCTTCTTTGTCGCTGACCTTGGGGCGATTATTCGCCAGCACCGCAAGT GGCAACGCTGCCTTCCCCGCGTGGAGCCCTTTTACGCCATCAAGTGCAAC ACCGACCCCGAGGTCTTGCGGACCCTCCTCCCCCTCTGCGCTGGCTTCGA CTGCGCGAGCAAGGGAGAGATTGAGACGATGCTTGCCCTGGGTGTCAACC CGTCCAACATTATCTATGCCAACCCCTGCAAGCCCCCGGAGCATGTGCGG TATGCCCGCGACCATGGTGTGCACCTTATGACGTTCGACAACGCCGATGA GCTGGCCAAGGTAAAGGCCATCAACCCGAATGCCAAGATGGTCCTGCGAA TCCTGACTGATGACTCGAAGTCGGTCTGTCGCTTCGGTACCAAATTTGGA GCCCATTTGCCCGCTACCCTGCCTTTGTTGCAGACGGCGCGCCACTTAGG GATGGATGTGGTGGGGGTTTCTTTTCACGTTGGTTCCGGGTGCCAGGACC CCATGGCTTTTGATGACGCAGTGCGCCGAGCGAAGAGGGTGTTCGAAGAA GGGGCACGGCTCGGGTACCACTTAACCTTATTGGATGTCGGGGGGGGTTC CCAGGGTCGGAAAAACGTCACTCGAGTGAGGATCCGGACATTCACGGAAA GGCCGAGGGAAGTGTAACATTCGAGGAGATAGCCGCGGTGTTGGGCAAGG CGATTCAGACGCATTTCCCAGACCCGGCTGTACGGGTGATTGCGGAGCCG GGCCGCTTTTATGTGGCACCGGCGTTTACGCTCGCTACCACCATTACATC ACGACGAGCTGTTTTCTCTGATGCGATGACGGCGGCGGATGACTCGAAGC TCGAAGGAAGAGCATCCGCGGCTGTGGCAGCTGGGGGAGGGCGAGCGACA TGTGCGGGTGGAATGATGACGACGACCACCACCACCACCACCACGGCCAC GAGCGCGATGATGATTGACGAAAGCGGGACAGAAGGAAGCGGGAAGCAGG CGGATCACCAGAAGATGGGGCTGCGCCAGGTGCAGGTTTCGAGCGAGGAG AAGAGTTTTATGTATTATGTGAATGATGGGGTGTATGGGTCATTCAATTG CCTGTTGTTTGACCACGCGCAGGCCTTCCCGAAGGTGCTCGCGGCCAAGT CGCGCGCGGTCCGTCATAAGGAGAGTGTGTGGTTGGGGGATTGGTATGAA TGCTCCGTATGGGGCCCCACGTGCGATAGCATGGATTGCATCAGCAAGAA GACCTTGCTGCCTGAGTTGGCGATTGGGGATTGGTTGTATTTTGAGGAGA TGGGGGCTTACACGCTCGCGGCGGCGTCGAGGTTCAACGGCTTTGAGCTC TCCTCGGTGTTTTACACCAACACAGAGGCGATGCCATGA
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Coding sequence (CDS) from alignment at chr5:244845..246433-

>NO05G00760.1 ID=NO05G00760.1|Name=NO05G00760.1|organism=Nannochloropsis oceanica|type=CDS|length=1527bp|location=Sequence derived from alignment at chr5:244845..246433- (Nannochloropsis oceanica)
ATGGCTGAGGTACAAGTCGACACGCACGTGCGCCGCTCCTCCCTTGACCT
TTCCATGGCTGACGAGCTTTCCGGCTGTGGCGCTGTCCTTCTTGGCGCTG
GGCCCTTGTCTCCACGTGTCCTTCACCCGCCTCCCACCGACGCCCTCCCT
ACCGTCCGCACCTTGCTAGAGCAAAAGGCCTTGCACGAGGGGTTGGAAGA
TGCCTTCTTTGTCGCTGACCTTGGGGCGATTATTCGCCAGCACCGCAAGT
GGCAACGCTGCCTTCCCCGCGTGGAGCCCTTTTACGCCATCAAGTGCAAC
ACCGACCCCGAGGTCTTGCGGACCCTCCTCCCCCTCTGCGCTGGCTTCGA
CTGCGCGAGCAAGGGAGAGATTGAGACGATGCTTGCCCTGGGTGTCAACC
CGTCCAACATTATCTATGCCAACCCCTGCAAGCCCCCGGAGCATGTGCGG
TATGCCCGCGACCATGGTGTGCACCTTATGACGTTCGACAACGCCGATGA
GCTGGCCAAGGTAAAGGCCATCAACCCGAATGCCAAGATGGTCCTGCGAA
TCCTGACTGATGACTCGAAGTCGGTCTGTCGCTTCGGTACCAAATTTGGA
GCCCATTTGCCCGCTACCCTGCCTTTGTTGCAGACGGCGCGCCACTTAGG
GATGGATGTGGTGGGGGTTTCTTTTCACGTTGGTTCCGGGTGCCAGGACC
CCATGGCTTTTGATGACGCAGTGCGCCGAGCGAAGAGGGTGTTCGAAGAA
GGGGCACGGCTCGGTGAGGATCCGGACATTCACGGAAAGGCCGAGGGAAG
TGTAACATTCGAGGAGATAGCCGCGGTGTTGGGCAAGGCGATTCAGACGC
ATTTCCCAGACCCGGCTGTACGGGTGATTGCGGAGCCGGGCCGCTTTTAT
GTGGCACCGGCGTTTACGCTCGCTACCACCATTACATCACGACGAGCTGT
TTTCTCTGATGCGATGACGGCGGCGGATGACTCGAAGCTCGAAGGAAGAG
CATCCGCGGCTGTGGCAGCTGGGGGAGGGCGAGCGACATGTGCGGGTGGA
ATGATGACGACGACCACCACCACCACCACCACGGCCACGAGCGCGATGAT
GATTGACGAAAGCGGGACAGAAGGAAGCGGGAAGCAGGCGGATCACCAGA
AGATGGGGCTGCGCCAGGTGCAGGTTTCGAGCGAGGAGAAGAGTTTTATG
TATTATGTGAATGATGGGGTGTATGGGTCATTCAATTGCCTGTTGTTTGA
CCACGCGCAGGCCTTCCCGAAGGTGCTCGCGGCCAAGTCGCGCGCGGTCC
GTCATAAGGAGAGTGTGTGGTTGGGGGATTGGTATGAATGCTCCGTATGG
GGCCCCACGTGCGATAGCATGGATTGCATCAGCAAGAAGACCTTGCTGCC
TGAGTTGGCGATTGGGGATTGGTTGTATTTTGAGGAGATGGGGGCTTACA
CGCTCGCGGCGGCGTCGAGGTTCAACGGCTTTGAGCTCTCCTCGGTGTTT
TACACCAACACAGAGGCGATGCCATGA
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Synonyms
Publications