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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr5 | genome | chr5:244845..246433 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G00760.1 vs.
Match: EWM28263.1 (ornithine decarboxylase [Nannochloropsis gaditana]) HSP 1 Score: 805.8 bits (2080), Expect = 7.500e-230 Identity = 409/531 (77.02%), Postives = 440/531 (82.86%), Query Frame = 0
Query: 1 MAEVQVDTHVRRSSLDLSMADELSGCGAVLLGAGPLSPRVLHPPPTDALPTVRTLLEQKALHEGLEDAFFVADLGAIIRQHRKWQRCLPRVEPFYAIKCNTDPEVLRTLLPLCAGFDCASKGEIETMLALGVNPSNIIYANPCKPPEHVRYARDHGVHLMTFDNADELAKVKAINPNAKMVLRILTDDSKSVCRFGTKFGAHLPATLPLLQTARHLGMDVVGVSFHVGSGCQDPMAFDDAVRRAKRVFEEGARLG---------------------EDPDIHGKAEGSVTFEEIAAVLGKAIQTHFPDPAVRVIAEPGRFYVAPAFTLATTITSRRAVF------SDAMTAADDSKLEGRA-----SAAVAAGGGRATCAGGMMTTTTTTTTTATSAMMIDESGTEGSGKQADHQKMGLRQVQVSSEEKSFMYYVNDGVYGSFNCLLFDHAQAFPKVLAAKSRAVRHKESVWLGDWYECSVWGPTCDSMDCISKKTLLPELAIGDWLYFEEMGAYTLAAASRFNGFELSSV 500
MAEVQVDTH+RRSSLDLSM+DELS CGAVLLG GPLSPRVLHPPPTD+LP+VRTLLE KALHEGLEDAFFVADLGA+IRQH+KWQRCLPRVEPFYA+KCNTDPEVLRTLLPLCAGFDCASKGEIETML +GV+PSNIIYANPCK PEH+RYARDHGVHLMTFDNADELAKVKAINP AKMVLRILTDDSKSVCRFGTKFGAHLPAT PLLQTARHLG+DVVGVSFHVGSGCQDPMAFDDAVRRAK+VFEEGARLG +DPDIHGKAEGSVTFE IAAVLGKAI THFPDPAVRVIAEPGR+YVAPAFTLATTITSRRAV+ D++ AA+DS L RA A GGRA GG ++I+ESG EG ++ + + E+KSFMYYVNDGVYGSFNCLLFDHAQAFPKVL+AK+R VRHKES W+G WYECSVWGPTCDSMDCISKKTLLPE+ IGDWLYFEEMGAYTL+AASRFNGFELS V
Sbjct: 1 MAEVQVDTHLRRSSLDLSMSDELSPCGAVLLGPGPLSPRVLHPPPTDSLPSVRTLLEHKALHEGLEDAFFVADLGAVIRQHKKWQRCLPRVEPFYAVKCNTDPEVLRTLLPLCAGFDCASKGEIETMLGMGVSPSNIIYANPCKSPEHIRYARDHGVHLMTFDNADELAKVKAINPQAKMVLRILTDDSKSVCRFGTKFGAHLPATYPLLQTARHLGLDVVGVSFHVGSGCQDPMAFDDAVRRAKKVFEEGARLGYRFSLLDVGGGFPGSEKRHTADDPDIHGKAEGSVTFEAIAAVLGKAIYTHFPDPAVRVIAEPGRYYVAPAFTLATTITSRRAVYHPAVAAGDSLNAANDSTLPQRAVSMDCGPAEVGEGGRAD--GG-----------KPGGVLIEESGAEGPRQETAQGTLS------AGEDKSFMYYVNDGVYGSFNCLLFDHAQAFPKVLSAKARPVRHKESAWVGAWYECSVWGPTCDSMDCISKKTLLPEMMIGDWLYFEEMGAYTLSAASRFNGFELSHV 512
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G00760.1 ID=NO05G00760.1|Name=NO05G00760.1|organism=Nannochloropsis oceanica|type=mRNA|length=1527bp ATGGCTGAGGTACAAGTCGACACGCACGTGCGCCGCTCCTCCCTTGACCT TTCCATGGCTGACGAGCTTTCCGGCTGTGGCGCTGTCCTTCTTGGCGCTG GGCCCTTGTCTCCACGTGTCCTTCACCCGCCTCCCACCGACGCCCTCCCT ACCGTCCGCACCTTGCTAGAGCAAAAGGCCTTGCACGAGGGGTTGGAAGA TGCCTTCTTTGTCGCTGACCTTGGGGCGATTATTCGCCAGCACCGCAAGT GGCAACGCTGCCTTCCCCGCGTGGAGCCCTTTTACGCCATCAAGTGCAAC ACCGACCCCGAGGTCTTGCGGACCCTCCTCCCCCTCTGCGCTGGCTTCGA CTGCGCGAGCAAGGGAGAGATTGAGACGATGCTTGCCCTGGGTGTCAACC CGTCCAACATTATCTATGCCAACCCCTGCAAGCCCCCGGAGCATGTGCGG TATGCCCGCGACCATGGTGTGCACCTTATGACGTTCGACAACGCCGATGA GCTGGCCAAGGTAAAGGCCATCAACCCGAATGCCAAGATGGTCCTGCGAA TCCTGACTGATGACTCGAAGTCGGTCTGTCGCTTCGGTACCAAATTTGGA GCCCATTTGCCCGCTACCCTGCCTTTGTTGCAGACGGCGCGCCACTTAGG GATGGATGTGGTGGGGGTTTCTTTTCACGTTGGTTCCGGGTGCCAGGACC CCATGGCTTTTGATGACGCAGTGCGCCGAGCGAAGAGGGTGTTCGAAGAA GGGGCACGGCTCGGTGAGGATCCGGACATTCACGGAAAGGCCGAGGGAAG TGTAACATTCGAGGAGATAGCCGCGGTGTTGGGCAAGGCGATTCAGACGC ATTTCCCAGACCCGGCTGTACGGGTGATTGCGGAGCCGGGCCGCTTTTAT GTGGCACCGGCGTTTACGCTCGCTACCACCATTACATCACGACGAGCTGT TTTCTCTGATGCGATGACGGCGGCGGATGACTCGAAGCTCGAAGGAAGAG CATCCGCGGCTGTGGCAGCTGGGGGAGGGCGAGCGACATGTGCGGGTGGA ATGATGACGACGACCACCACCACCACCACCACGGCCACGAGCGCGATGAT GATTGACGAAAGCGGGACAGAAGGAAGCGGGAAGCAGGCGGATCACCAGA AGATGGGGCTGCGCCAGGTGCAGGTTTCGAGCGAGGAGAAGAGTTTTATG TATTATGTGAATGATGGGGTGTATGGGTCATTCAATTGCCTGTTGTTTGA CCACGCGCAGGCCTTCCCGAAGGTGCTCGCGGCCAAGTCGCGCGCGGTCC GTCATAAGGAGAGTGTGTGGTTGGGGGATTGGTATGAATGCTCCGTATGG GGCCCCACGTGCGATAGCATGGATTGCATCAGCAAGAAGACCTTGCTGCC TGAGTTGGCGATTGGGGATTGGTTGTATTTTGAGGAGATGGGGGCTTACA CGCTCGCGGCGGCGTCGAGGTTCAACGGCTTTGAGCTCTCCTCGGTGTTT TACACCAACACAGAGGCGATGCCATGA back to topprotein sequence of NO05G00760.1 >NO05G00760.1-protein ID=NO05G00760.1-protein|Name=NO05G00760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=509bp MAEVQVDTHVRRSSLDLSMADELSGCGAVLLGAGPLSPRVLHPPPTDALP TVRTLLEQKALHEGLEDAFFVADLGAIIRQHRKWQRCLPRVEPFYAIKCN TDPEVLRTLLPLCAGFDCASKGEIETMLALGVNPSNIIYANPCKPPEHVR YARDHGVHLMTFDNADELAKVKAINPNAKMVLRILTDDSKSVCRFGTKFG AHLPATLPLLQTARHLGMDVVGVSFHVGSGCQDPMAFDDAVRRAKRVFEE GARLGEDPDIHGKAEGSVTFEEIAAVLGKAIQTHFPDPAVRVIAEPGRFY VAPAFTLATTITSRRAVFSDAMTAADDSKLEGRASAAVAAGGGRATCAGG MMTTTTTTTTTATSAMMIDESGTEGSGKQADHQKMGLRQVQVSSEEKSFM YYVNDGVYGSFNCLLFDHAQAFPKVLAAKSRAVRHKESVWLGDWYECSVW GPTCDSMDCISKKTLLPELAIGDWLYFEEMGAYTLAAASRFNGFELSSVF YTNTEAMP* back to topmRNA from alignment at chr5:244845..246433- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G00760.1 ID=NO05G00760.1|Name=NO05G00760.1|organism=Nannochloropsis oceanica|type=mRNA|length=1589bp|location=Sequence derived from alignment at chr5:244845..246433- (Nannochloropsis oceanica) ATGGCTGAGGTACAAGTCGACACGCACGTGCGCCGCTCCTCCCTTGACCT
TTCCATGGCTGACGAGCTTTCCGGCTGTGGCGCTGTCCTTCTTGGCGCTG
GGCCCTTGTCTCCACGTGTCCTTCACCCGCCTCCCACCGACGCCCTCCCT
ACCGTCCGCACCTTGCTAGAGCAAAAGGCCTTGCACGAGGGGTTGGAAGA
TGCCTTCTTTGTCGCTGACCTTGGGGCGATTATTCGCCAGCACCGCAAGT
GGCAACGCTGCCTTCCCCGCGTGGAGCCCTTTTACGCCATCAAGTGCAAC
ACCGACCCCGAGGTCTTGCGGACCCTCCTCCCCCTCTGCGCTGGCTTCGA
CTGCGCGAGCAAGGGAGAGATTGAGACGATGCTTGCCCTGGGTGTCAACC
CGTCCAACATTATCTATGCCAACCCCTGCAAGCCCCCGGAGCATGTGCGG
TATGCCCGCGACCATGGTGTGCACCTTATGACGTTCGACAACGCCGATGA
GCTGGCCAAGGTAAAGGCCATCAACCCGAATGCCAAGATGGTCCTGCGAA
TCCTGACTGATGACTCGAAGTCGGTCTGTCGCTTCGGTACCAAATTTGGA
GCCCATTTGCCCGCTACCCTGCCTTTGTTGCAGACGGCGCGCCACTTAGG
GATGGATGTGGTGGGGGTTTCTTTTCACGTTGGTTCCGGGTGCCAGGACC
CCATGGCTTTTGATGACGCAGTGCGCCGAGCGAAGAGGGTGTTCGAAGAA
GGGGCACGGCTCGGGTACCACTTAACCTTATTGGATGTCGGGGGGGGTTC
CCAGGGTCGGAAAAACGTCACTCGAGTGAGGATCCGGACATTCACGGAAA
GGCCGAGGGAAGTGTAACATTCGAGGAGATAGCCGCGGTGTTGGGCAAGG
CGATTCAGACGCATTTCCCAGACCCGGCTGTACGGGTGATTGCGGAGCCG
GGCCGCTTTTATGTGGCACCGGCGTTTACGCTCGCTACCACCATTACATC
ACGACGAGCTGTTTTCTCTGATGCGATGACGGCGGCGGATGACTCGAAGC
TCGAAGGAAGAGCATCCGCGGCTGTGGCAGCTGGGGGAGGGCGAGCGACA
TGTGCGGGTGGAATGATGACGACGACCACCACCACCACCACCACGGCCAC
GAGCGCGATGATGATTGACGAAAGCGGGACAGAAGGAAGCGGGAAGCAGG
CGGATCACCAGAAGATGGGGCTGCGCCAGGTGCAGGTTTCGAGCGAGGAG
AAGAGTTTTATGTATTATGTGAATGATGGGGTGTATGGGTCATTCAATTG
CCTGTTGTTTGACCACGCGCAGGCCTTCCCGAAGGTGCTCGCGGCCAAGT
CGCGCGCGGTCCGTCATAAGGAGAGTGTGTGGTTGGGGGATTGGTATGAA
TGCTCCGTATGGGGCCCCACGTGCGATAGCATGGATTGCATCAGCAAGAA
GACCTTGCTGCCTGAGTTGGCGATTGGGGATTGGTTGTATTTTGAGGAGA
TGGGGGCTTACACGCTCGCGGCGGCGTCGAGGTTCAACGGCTTTGAGCTC
TCCTCGGTGTTTTACACCAACACAGAGGCGATGCCATGA back to topCoding sequence (CDS) from alignment at chr5:244845..246433- >NO05G00760.1 ID=NO05G00760.1|Name=NO05G00760.1|organism=Nannochloropsis oceanica|type=CDS|length=1527bp|location=Sequence derived from alignment at chr5:244845..246433- (Nannochloropsis oceanica) ATGGCTGAGGTACAAGTCGACACGCACGTGCGCCGCTCCTCCCTTGACCT TTCCATGGCTGACGAGCTTTCCGGCTGTGGCGCTGTCCTTCTTGGCGCTG GGCCCTTGTCTCCACGTGTCCTTCACCCGCCTCCCACCGACGCCCTCCCT ACCGTCCGCACCTTGCTAGAGCAAAAGGCCTTGCACGAGGGGTTGGAAGA TGCCTTCTTTGTCGCTGACCTTGGGGCGATTATTCGCCAGCACCGCAAGT GGCAACGCTGCCTTCCCCGCGTGGAGCCCTTTTACGCCATCAAGTGCAAC ACCGACCCCGAGGTCTTGCGGACCCTCCTCCCCCTCTGCGCTGGCTTCGA CTGCGCGAGCAAGGGAGAGATTGAGACGATGCTTGCCCTGGGTGTCAACC CGTCCAACATTATCTATGCCAACCCCTGCAAGCCCCCGGAGCATGTGCGG TATGCCCGCGACCATGGTGTGCACCTTATGACGTTCGACAACGCCGATGA GCTGGCCAAGGTAAAGGCCATCAACCCGAATGCCAAGATGGTCCTGCGAA TCCTGACTGATGACTCGAAGTCGGTCTGTCGCTTCGGTACCAAATTTGGA GCCCATTTGCCCGCTACCCTGCCTTTGTTGCAGACGGCGCGCCACTTAGG GATGGATGTGGTGGGGGTTTCTTTTCACGTTGGTTCCGGGTGCCAGGACC CCATGGCTTTTGATGACGCAGTGCGCCGAGCGAAGAGGGTGTTCGAAGAA GGGGCACGGCTCGGTGAGGATCCGGACATTCACGGAAAGGCCGAGGGAAG TGTAACATTCGAGGAGATAGCCGCGGTGTTGGGCAAGGCGATTCAGACGC ATTTCCCAGACCCGGCTGTACGGGTGATTGCGGAGCCGGGCCGCTTTTAT GTGGCACCGGCGTTTACGCTCGCTACCACCATTACATCACGACGAGCTGT TTTCTCTGATGCGATGACGGCGGCGGATGACTCGAAGCTCGAAGGAAGAG CATCCGCGGCTGTGGCAGCTGGGGGAGGGCGAGCGACATGTGCGGGTGGA ATGATGACGACGACCACCACCACCACCACCACGGCCACGAGCGCGATGAT GATTGACGAAAGCGGGACAGAAGGAAGCGGGAAGCAGGCGGATCACCAGA AGATGGGGCTGCGCCAGGTGCAGGTTTCGAGCGAGGAGAAGAGTTTTATG TATTATGTGAATGATGGGGTGTATGGGTCATTCAATTGCCTGTTGTTTGA CCACGCGCAGGCCTTCCCGAAGGTGCTCGCGGCCAAGTCGCGCGCGGTCC GTCATAAGGAGAGTGTGTGGTTGGGGGATTGGTATGAATGCTCCGTATGG GGCCCCACGTGCGATAGCATGGATTGCATCAGCAAGAAGACCTTGCTGCC TGAGTTGGCGATTGGGGATTGGTTGTATTTTGAGGAGATGGGGGCTTACA CGCTCGCGGCGGCGTCGAGGTTCAACGGCTTTGAGCTCTCCTCGGTGTTT TACACCAACACAGAGGCGATGCCATGA back to top
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