NO05G00730.1, NO05G00730.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G00730.1
Unique NameNO05G00730.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1185
Alignment locationchr5:237541..239100 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:237541..239100 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G00730.1 vs.
Match: EWM28318.1 (Ribosomal protein S7, conserved site [Nannochloropsis gaditana])

HSP 1 Score: 386.0 bits (990), Expect = 1.000e-103
Identity = 201/211 (95.26%), Postives = 204/211 (96.68%), Query Frame = 0 
Query:   66 EAEAAVPFE-TDMAVGFEDNTADIKLFGKWSLSDVEIKDLSLEDYIGVNGKCATYLPHTAGRYQKKRFRKAQCPVVERLANSLMRKGRNSGKKLMANRIVKHTLEIIHLLTDQNPVQVVVDSIINAGPREDSTRVGSAGVVRRQAVDMSPFRRVNQAIYLITTGARESSFRNIKTIAETLADEIINAAKGSSNSYAIKKKDEVERVAKANR 276
            E +  VP+E  DMAV FEDN+ADIKLFGKWSLSDVEIKDLSLEDYIGVNGKCATYLPHTAGRYQKKRFRKAQCPVVERLANSLMRKGRNSGKKL ANRIVKHTLEIIHLLTDQNPVQVVVDSIINAGPREDSTRVGSAGVVRRQAVDMSPFRRVNQAIYLITTGARESSFRNIKTIAETLADEIINAAKGSSNSYAIKKKDEVERVAKANR
Sbjct:    5 EIDETVPYEPADMAVAFEDNSADIKLFGKWSLSDVEIKDLSLEDYIGVNGKCATYLPHTAGRYQKKRFRKAQCPVVERLANSLMRKGRNSGKKLTANRIVKHTLEIIHLLTDQNPVQVVVDSIINAGPREDSTRVGSAGVVRRQAVDMSPFRRVNQAIYLITTGARESSFRNIKTIAETLADEIINAAKGSSNSYAIKKKDEVERVAKANR 215
The following BLAST results are available for this feature:
BLAST of NO05G00730.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28318.11.000e-10395.26Ribosomal protein S7, conserved site [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G00730NO05G00730Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G00730.1NO05G00730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G00730.1.cds1NO05G00730.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00730.1.cds2NO05G00730.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00730.1.cds3NO05G00730.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G00730.1 ID=NO05G00730.1|Name=NO05G00730.1|organism=Nannochloropsis oceanica|type=mRNA|length=1185bp
ATGTCTGTGGTGCTGAATGATTTTGGATGCCTTGTGGTGGACAAGCGTGG
CTGCCATTCGTCTGAGCATCAGGAGGGGGAGGAGGCCTCATCGCCTAATC
GACTCCTGCCTTTGGCCATCCACCAGCAGCCAACAGCGCCCACGTACCAA
GACGAGACAGTAGTCACTATGGCTGACGAGATTGTTCCTTTCGACGAGGC
CGAGGCCGCCGTGCCCTTCGAAACCGACATGGCTGTGGGGTTCGAGGACA
ACACGGCCGACATCAAGCTCTTCGGCAAATGGAGCCTGTCCGACGTCGAG
ATCAAGGACTTGTCCCTGGAGGACTACATTGGCGTGAATGGCAAGTGCGC
CACCTACCTCCCTCACACGGCGGGCCGCTACCAAAAGAAGCGCTTTCGCA
AGGCGCAGTGCCCCGTGGTGGAACGGTTGGCGAACTCGCTTATGCGCAAG
GGCCGCAACAGCGGGAAAAAGCTCATGGCTAACCGGATCGTGAAGCACAC
CCTCGAGATTATTCACCTCCTGACGGATCAGAACCCGGTGCAGGTGGTGG
TGGACAGCATTATCAATGCCGGTCCTCGGGAGGACTCGACCCGGGTGGGT
TCTGCCGGTGTGGTGCGACGACAAGCCGTTGATATGTCTCCCTTCCGCCG
TGTTAACCAGGCCATCTACCTGATCACCACGGGCGCGCGCGAGTCGAGCT
TTAGGAACATTAAGACGATTGCCGAGACGTTGGCGGATGAGATCATTAAC
GCCGCTAAGGGGAGCTCCAACAGTTATGCCATTAAGAAGAAGGACGAGGT
GGAGCGTGTCGCCAAGGCGAACAGATAAACAATCAGTGGGAGGAAGGGAG
AGGGAGGAAGGGTACATGGACGGGAAGAAGGAAGGGGTGTGATGCGCAGG
CTGTTGATTCGAGGAAGAGCAGCAGACTGGAGGGATGGAGGAAAGGAGGG
AGAGAGAGAGAGAGGGAGCAGGTGTGAAAGGAGAAGATGGTTTATCTACG
ATTTCTTTCGTATTTCGGTTCGTCTCTTAATGGTTCTCCTCCATCTCCTT
TCATGGGGGAGGGAGGAAGGGAGGGAAGGAGGGGGAGAGGGAAGATGGAG
GAATCATAGGCATCGAACCTGGACGCAACTCTCTTGTGGGGGTGATGAGG
GAGGGAGGGAGAGAGGGAGGGAGAGAGGGAGGGAG
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protein sequence of NO05G00730.1

>NO05G00730.1-protein ID=NO05G00730.1-protein|Name=NO05G00730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=276bp
MSVVLNDFGCLVVDKRGCHSSEHQEGEEASSPNRLLPLAIHQQPTAPTYQ
DETVVTMADEIVPFDEAEAAVPFETDMAVGFEDNTADIKLFGKWSLSDVE
IKDLSLEDYIGVNGKCATYLPHTAGRYQKKRFRKAQCPVVERLANSLMRK
GRNSGKKLMANRIVKHTLEIIHLLTDQNPVQVVVDSIINAGPREDSTRVG
SAGVVRRQAVDMSPFRRVNQAIYLITTGARESSFRNIKTIAETLADEIIN
AAKGSSNSYAIKKKDEVERVAKANR*
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mRNA from alignment at chr5:237541..239100+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G00730.1 ID=NO05G00730.1|Name=NO05G00730.1|organism=Nannochloropsis oceanica|type=mRNA|length=1560bp|location=Sequence derived from alignment at chr5:237541..239100+ (Nannochloropsis oceanica)
ATGTCTGTGGTGCTGAATGATTTTGGATGCCTTGTGGTGGACAAGCGTGG
CTGCCATTCGTCTGAGCATCAGGAGGGGGAGGAGGCCTCATCGCCTAATC
GACTCCTGCCTTTGGCCATCCACCAGCAGCCAACAGCGCCCACGTACCAA
GACGAGACGTACGCTTACGCATGGATTATGTTGCCTGCAGTGGGATAGCG
GCTGGTGGAAAAAGAGGATGCCGGGGTTGAGAGCTGAGGCAACTTGCGCA
GCGCTAGACCCAAAAGAAGGACATGGGGGGTGTTGGACACTCACAAAAAC
TCTCCCCACATAATCCCCACAACGACCACAGAGTAGTCACTATGGCTGAC
GAGATTGTTCCTTTCGACGAGGCCGAGGCCGCCGTGCCCTTCGAAACCGA
CATGGCTGTGGGGTTCGAGGACAACACGGCCGACATCAAGCTCTTCGGCA
AATGGTACGTGGATGACGATTAAGCTTTCCCGCAGCGCCCAATCCTTCTT
GCATCCTCCCGTGTTCCATCTATGTAACAAGCCTTTGAGCATGTGGCCGT
ATTGTACTCGAGCTAGCTGGTTGCGCCGCAGCCAAAGCTTTCGCTTCTAT
TGCTTGTAATTCCGCCTCGTTCTCATCCCAATCCATGCCCATTCCTCCCT
CTGCAGGAGCCTGTCCGACGTCGAGATCAAGGACTTGTCCCTGGAGGACT
ACATTGGCGTGAATGGCAAGTGCGCCACCTACCTCCCTCACACGGCGGGC
CGCTACCAAAAGAAGCGCTTTCGCAAGGCGCAGTGCCCCGTGGTGGAACG
GTTGGCGAACTCGCTTATGCGCAAGGGCCGCAACAGCGGGAAAAAGCTCA
TGGCTAACCGGATCGTGAAGCACACCCTCGAGATTATTCACCTCCTGACG
GATCAGAACCCGGTGCAGGTGGTGGTGGACAGCATTATCAATGCCGGTCC
TCGGGAGGACTCGACCCGGGTGGGTTCTGCCGGTGTGGTGCGACGACAAG
CCGTTGATATGTCTCCCTTCCGCCGTGTTAACCAGGCCATCTACCTGATC
ACCACGGGCGCGCGCGAGTCGAGCTTTAGGAACATTAAGACGATTGCCGA
GACGTTGGCGGATGAGATCATTAACGCCGCTAAGGGGAGCTCCAACAGTT
ATGCCATTAAGAAGAAGGACGAGGTGGAGCGTGTCGCCAAGGCGAACAGA
TAAACAATCAGTGGGAGGAAGGGAGAGGGAGGAAGGGTACATGGACGGGA
AGAAGGAAGGGGTGTGATGCGCAGGCTGTTGATTCGAGGAAGAGCAGCAG
ACTGGAGGGATGGAGGAAAGGAGGGAGAGAGAGAGAGAGGGAGCAGGTGT
GAAAGGAGAAGATGGTTTATCTACGATTTCTTTCGTATTTCGGTTCGTCT
CTTAATGGTTCTCCTCCATCTCCTTTCATGGGGGAGGGAGGAAGGGAGGG
AAGGAGGGGGAGAGGGAAGATGGAGGAATCATAGGCATCGAACCTGGACG
CAACTCTCTTGTGGGGGTGATGAGGGAGGGAGGGAGAGAGGGAGGGAGAG
AGGGAGGGAG
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Coding sequence (CDS) from alignment at chr5:237541..239100+

>NO05G00730.1 ID=NO05G00730.1|Name=NO05G00730.1|organism=Nannochloropsis oceanica|type=CDS|length=828bp|location=Sequence derived from alignment at chr5:237541..239100+ (Nannochloropsis oceanica)
ATGTCTGTGGTGCTGAATGATTTTGGATGCCTTGTGGTGGACAAGCGTGG
CTGCCATTCGTCTGAGCATCAGGAGGGGGAGGAGGCCTCATCGCCTAATC
GACTCCTGCCTTTGGCCATCCACCAGCAGCCAACAGCGCCCACGTACCAA
GACGAGACAGTAGTCACTATGGCTGACGAGATTGTTCCTTTCGACGAGGC
CGAGGCCGCCGTGCCCTTCGAAACCGACATGGCTGTGGGGTTCGAGGACA
ACACGGCCGACATCAAGCTCTTCGGCAAATGGAGCCTGTCCGACGTCGAG
ATCAAGGACTTGTCCCTGGAGGACTACATTGGCGTGAATGGCAAGTGCGC
CACCTACCTCCCTCACACGGCGGGCCGCTACCAAAAGAAGCGCTTTCGCA
AGGCGCAGTGCCCCGTGGTGGAACGGTTGGCGAACTCGCTTATGCGCAAG
GGCCGCAACAGCGGGAAAAAGCTCATGGCTAACCGGATCGTGAAGCACAC
CCTCGAGATTATTCACCTCCTGACGGATCAGAACCCGGTGCAGGTGGTGG
TGGACAGCATTATCAATGCCGGTCCTCGGGAGGACTCGACCCGGGTGGGT
TCTGCCGGTGTGGTGCGACGACAAGCCGTTGATATGTCTCCCTTCCGCCG
TGTTAACCAGGCCATCTACCTGATCACCACGGGCGCGCGCGAGTCGAGCT
TTAGGAACATTAAGACGATTGCCGAGACGTTGGCGGATGAGATCATTAAC
GCCGCTAAGGGGAGCTCCAACAGTTATGCCATTAAGAAGAAGGACGAGGT
GGAGCGTGTCGCCAAGGCGAACAGATAA
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Synonyms
Publications