NO05G00620.1, NO05G00620.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G00620.1
Unique NameNO05G00620.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1902
Alignment locationchr5:205334..207410 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:205334..207410 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO05G00620.1 vs.
Match: EWM28320.1 (fad-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 748.0 bits (1930), Expect = 2.300e-212
Identity = 393/589 (66.72%), Postives = 450/589 (76.40%), Query Frame = 0 
Query:   48 FLLILLIVIVLPFPLVKAYPQPRSFFRMAASTSTSPTTTTSDSASTTPIKRQNCNVLIAGGGPAGLAAALCLARRGYSDIHILERNPSASYFEVDKSYLYRIDGRGQRLTGLLGITEQMKEVSITTEEFLDITIVQPDGTVKTVKAPADPSQQTAYWLPRRALLSFLSSQIDKEDCGKAITFHFGVNIEKLVMPRTQGEVEAPGAQATVQVRMGDGTRVEFLSQKVLGCDGMNSKIRTGLADWAAGVSGEAAGVEKETNSK---------------KSKTPRFGLHFINSPSAGLRYKILTLLDDFPLLASTPQNLTVKQTCYSYVGRPTGGYLSPLPPLRLGLLPFKMKNIPRTANIITVPNAPIFSLTTGPEVLAFLKKELPQCDIDRMVSKEEADRFAASPGGYFPRPQYCLETQVVLGGGKERWKEGGMEEGKEGGGIVLMGDAIHAFPPDLGAGVNIALLDVLDFIFALDRSEGDWGQALPLYENLRAPQSRAVCELIPIGFPQQYNHMLPIQKSIKLLGVGMRVALSKAFPWVVAPPVFFMCQDVRLDYSQVWQRARRTTRVLKAVGMALVAAMVWQLWGGRG 622
            FL IL  V  L F  V+AY  PRS   MA  TSTSP    S   S+T IK  +CNVLIAGGGPAGLAAAL LARRGY DIH+LERNPSA YFEVDKSYLYRIDGRGQRLTGLLGIT+ M+EVSITTEEFL+ITIVQ DG+VK VKAPADPSQQTAYWLPRRALLSFL  +I KEDCGKAI+FH+GV I++ VMP  + E     AQA +   +GDGT  EF+SQKV+GCDGMNS+IR GL  WAA    +A  +  ++  +               K   PRFGL ++++PSAGLRYKIL L D FPL  + P   T ++TCYSYVGRP  GY S  PPLRLGLLPFKM+ IPRTANII  P+A IF L  G +V+AFLK+ELPQCD+D+MVS EEA+RFA S GG+FPRPQYCL+ Q VL         GG + G+  GG+VLMGDAIHAFPPDLGAGVNIALLDVLDFIF+LD++EGDW  ALPLYE LR PQSRAVCELIPIGFPQQYNHMLP+QKS+KL+GVG+R AL KAF WV+APPVFFMCQDVR DYSQV  RA RTTRVL+ VGM L+ A++W+  GGRG
Sbjct:   18 FLGILTFVSQLLF--VEAYRHPRSLLHMAV-TSTSPNPIHS---SSTSIKELHCNVLIAGGGPAGLAAALSLARRGYQDIHVLERNPSAEYFEVDKSYLYRIDGRGQRLTGLLGITDAMQEVSITTEEFLNITIVQADGSVKVVKAPADPSQQTAYWLPRRALLSFLYDRIQKEDCGKAISFHWGVTIQRFVMPPPE-ETAQITAQAKIVAALGDGTPTEFVSQKVIGCDGMNSRIRKGLEAWAASDPKKAEQIPSKSKERSIVKRVGRRWGWGRGKRDRPRFGLQYVDAPSAGLRYKILALQDGFPLTHAEPDTPTRRETCYSYVGRPK-GYFS--PPLRLGLLPFKMQGIPRTANIIASPSADIFGLEKGQDVIAFLKRELPQCDVDQMVSPEEAERFARSSGGFFPRPQYCLDAQQVL---------GGRDGGQGAGGVVLMGDAIHAFPPDLGAGVNIALLDVLDFIFSLDKTEGDWAAALPLYETLRGPQSRAVCELIPIGFPQQYNHMLPVQKSLKLMGVGLRAALHKAFSWVLAPPVFFMCQDVRWDYSQVLARATRTTRVLRTVGMLLLGAVLWRWNGGRG 587
The following BLAST results are available for this feature:
BLAST of NO05G00620.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28320.12.300e-21266.72fad-binding protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G00620NO05G00620Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G00620.1NO05G00620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G00620.1.cds1NO05G00620.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00620.1.cds2NO05G00620.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G00620.1 ID=NO05G00620.1|Name=NO05G00620.1|organism=Nannochloropsis oceanica|type=mRNA|length=1902bp
ATGTGTGTGGTGGTGCGTCTTTGCATGTTGAGAAGAGGAGTGGGGAGACA
CGAGCAGTACGCCAATACGGCCATGCCACACCCCTTTTGTGGCGCCTCGT
CATCGTCTTCCGCCTCGTGCTCGAGACCGCGACGTCTCCTCTTCCTTCTC
ATCCTCCTAATTGTCATTGTCCTCCCATTCCCCCTTGTCAAGGCCTATCC
GCAGCCCCGCTCCTTCTTCCGCATGGCCGCCTCCACTTCTACCTCCCCCA
CTACCACTACCTCAGACTCCGCCTCCACCACTCCCATAAAAAGGCAAAAC
TGCAATGTTCTTATTGCCGGCGGTGGCCCTGCCGGCCTCGCTGCTGCACT
TTGTCTCGCTCGCCGTGGCTACTCTGACATTCACATCCTCGAACGCAACC
CCTCCGCCTCCTACTTCGAAGTGGACAAGTCATACCTGTATCGCATTGAC
GGTCGGGGACAGCGGCTCACAGGCTTGCTAGGTATCACGGAGCAAATGAA
AGAGGTGTCCATAACGACGGAAGAATTCTTGGACATAACCATCGTCCAAC
CTGACGGTACTGTGAAAACAGTTAAGGCCCCCGCAGACCCGAGTCAACAG
ACCGCTTATTGGCTCCCCCGTCGTGCCCTTCTCTCCTTCCTCTCATCCCA
AATCGACAAGGAAGACTGCGGAAAGGCCATTACATTTCACTTTGGCGTGA
ACATTGAGAAATTGGTCATGCCGCGGACGCAGGGAGAGGTGGAGGCGCCC
GGGGCCCAAGCAACGGTACAGGTGAGGATGGGAGATGGAACGAGGGTGGA
GTTCCTCTCGCAAAAGGTCTTGGGCTGCGACGGGATGAACAGTAAGATTC
GAACAGGCTTGGCTGATTGGGCAGCCGGAGTATCAGGAGAAGCAGCAGGC
GTGGAGAAGGAGACAAACAGCAAGAAGAGCAAGACTCCTCGTTTTGGCCT
CCACTTCATCAACTCGCCTTCCGCTGGCCTCCGATATAAGATTCTCACCC
TCCTCGACGATTTCCCCCTTCTTGCTTCCACCCCTCAAAATCTAACCGTC
AAACAAACGTGCTATTCCTACGTCGGTCGCCCCACCGGTGGGTACCTCTC
TCCCCTTCCCCCTCTCCGCCTCGGCTTGCTCCCCTTTAAAATGAAGAATA
TACCCCGCACGGCGAACATCATCACCGTCCCCAACGCTCCCATTTTCTCG
CTCACCACGGGCCCTGAAGTCCTGGCGTTTCTCAAAAAAGAATTGCCCCA
GTGTGACATTGACAGGATGGTTTCAAAGGAGGAGGCCGATCGCTTTGCCG
CCTCGCCTGGGGGATATTTCCCTCGACCCCAGTACTGTCTCGAGACGCAG
GTGGTCCTTGGAGGTGGAAAGGAGAGATGGAAGGAGGGAGGGATGGAGGA
AGGGAAGGAGGGAGGGGGCATAGTGCTAATGGGCGATGCGATTCATGCTT
TTCCTCCTGATCTTGGCGCCGGCGTAAACATCGCGTTGTTGGATGTGCTT
GATTTTATCTTTGCTCTAGATCGAAGTGAGGGGGACTGGGGACAGGCGCT
GCCATTGTATGAAAACTTGAGGGCGCCTCAAAGTCGGGCGGTGTGCGAGT
TAATCCCGATTGGGTTCCCCCAGCAATATAACCACATGCTTCCCATCCAG
AAATCGATCAAATTGTTGGGGGTTGGGATGAGGGTGGCGTTGAGCAAGGC
TTTTCCATGGGTGGTGGCACCGCCGGTGTTCTTTATGTGTCAGGATGTGA
GGTTGGATTACTCGCAGGTGTGGCAAAGGGCGAGGAGGACTACGAGGGTG
TTGAAAGCGGTGGGGATGGCACTAGTGGCAGCGATGGTTTGGCAGCTGTG
GGGGGGAAGGGGGGAGGGAGGGGGCTGCAGGAGGGGTTGGGGTGCGTGGT
AG
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protein sequence of NO05G00620.1

>NO05G00620.1-protein ID=NO05G00620.1-protein|Name=NO05G00620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=634bp
MCVVVRLCMLRRGVGRHEQYANTAMPHPFCGASSSSSASCSRPRRLLFLL
ILLIVIVLPFPLVKAYPQPRSFFRMAASTSTSPTTTTSDSASTTPIKRQN
CNVLIAGGGPAGLAAALCLARRGYSDIHILERNPSASYFEVDKSYLYRID
GRGQRLTGLLGITEQMKEVSITTEEFLDITIVQPDGTVKTVKAPADPSQQ
TAYWLPRRALLSFLSSQIDKEDCGKAITFHFGVNIEKLVMPRTQGEVEAP
GAQATVQVRMGDGTRVEFLSQKVLGCDGMNSKIRTGLADWAAGVSGEAAG
VEKETNSKKSKTPRFGLHFINSPSAGLRYKILTLLDDFPLLASTPQNLTV
KQTCYSYVGRPTGGYLSPLPPLRLGLLPFKMKNIPRTANIITVPNAPIFS
LTTGPEVLAFLKKELPQCDIDRMVSKEEADRFAASPGGYFPRPQYCLETQ
VVLGGGKERWKEGGMEEGKEGGGIVLMGDAIHAFPPDLGAGVNIALLDVL
DFIFALDRSEGDWGQALPLYENLRAPQSRAVCELIPIGFPQQYNHMLPIQ
KSIKLLGVGMRVALSKAFPWVVAPPVFFMCQDVRLDYSQVWQRARRTTRV
LKAVGMALVAAMVWQLWGGRGEGGGCRRGWGAW*
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mRNA from alignment at chr5:205334..207410+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G00620.1 ID=NO05G00620.1|Name=NO05G00620.1|organism=Nannochloropsis oceanica|type=mRNA|length=2077bp|location=Sequence derived from alignment at chr5:205334..207410+ (Nannochloropsis oceanica)
ATGTGTGTGGTGGTGCGTCTTTGCATGTTGAGAAGAGGAGTGGGGAGGTA
AGCTGAAGTGCCATCGAAATTAATTGAGTCAAGCATCAAGACATCCCTTG
CCCCAGCACTACTACCATTACCAAAAGCGGCAAAGAGAGGGCAAGACGAG
GACAGGATGATGGAAACATTACATCCGCCCCATAGCTTCCCATCAAACCC
CCATTACCACCCCATCACACAGACACGAGCAGTACGCCAATACGGCCATG
CCACACCCCTTTTGTGGCGCCTCGTCATCGTCTTCCGCCTCGTGCTCGAG
ACCGCGACGTCTCCTCTTCCTTCTCATCCTCCTAATTGTCATTGTCCTCC
CATTCCCCCTTGTCAAGGCCTATCCGCAGCCCCGCTCCTTCTTCCGCATG
GCCGCCTCCACTTCTACCTCCCCCACTACCACTACCTCAGACTCCGCCTC
CACCACTCCCATAAAAAGGCAAAACTGCAATGTTCTTATTGCCGGCGGTG
GCCCTGCCGGCCTCGCTGCTGCACTTTGTCTCGCTCGCCGTGGCTACTCT
GACATTCACATCCTCGAACGCAACCCCTCCGCCTCCTACTTCGAAGTGGA
CAAGTCATACCTGTATCGCATTGACGGTCGGGGACAGCGGCTCACAGGCT
TGCTAGGTATCACGGAGCAAATGAAAGAGGTGTCCATAACGACGGAAGAA
TTCTTGGACATAACCATCGTCCAACCTGACGGTACTGTGAAAACAGTTAA
GGCCCCCGCAGACCCGAGTCAACAGACCGCTTATTGGCTCCCCCGTCGTG
CCCTTCTCTCCTTCCTCTCATCCCAAATCGACAAGGAAGACTGCGGAAAG
GCCATTACATTTCACTTTGGCGTGAACATTGAGAAATTGGTCATGCCGCG
GACGCAGGGAGAGGTGGAGGCGCCCGGGGCCCAAGCAACGGTACAGGTGA
GGATGGGAGATGGAACGAGGGTGGAGTTCCTCTCGCAAAAGGTCTTGGGC
TGCGACGGGATGAACAGTAAGATTCGAACAGGCTTGGCTGATTGGGCAGC
CGGAGTATCAGGAGAAGCAGCAGGCGTGGAGAAGGAGACAAACAGCAAGA
AGAGCAAGACTCCTCGTTTTGGCCTCCACTTCATCAACTCGCCTTCCGCT
GGCCTCCGATATAAGATTCTCACCCTCCTCGACGATTTCCCCCTTCTTGC
TTCCACCCCTCAAAATCTAACCGTCAAACAAACGTGCTATTCCTACGTCG
GTCGCCCCACCGGTGGGTACCTCTCTCCCCTTCCCCCTCTCCGCCTCGGC
TTGCTCCCCTTTAAAATGAAGAATATACCCCGCACGGCGAACATCATCAC
CGTCCCCAACGCTCCCATTTTCTCGCTCACCACGGGCCCTGAAGTCCTGG
CGTTTCTCAAAAAAGAATTGCCCCAGTGTGACATTGACAGGATGGTTTCA
AAGGAGGAGGCCGATCGCTTTGCCGCCTCGCCTGGGGGATATTTCCCTCG
ACCCCAGTACTGTCTCGAGACGCAGGTGGTCCTTGGAGGTGGAAAGGAGA
GATGGAAGGAGGGAGGGATGGAGGAAGGGAAGGAGGGAGGGGGCATAGTG
CTAATGGGCGATGCGATTCATGCTTTTCCTCCTGATCTTGGCGCCGGCGT
AAACATCGCGTTGTTGGATGTGCTTGATTTTATCTTTGCTCTAGATCGAA
GTGAGGGGGACTGGGGACAGGCGCTGCCATTGTATGAAAACTTGAGGGCG
CCTCAAAGTCGGGCGGTGTGCGAGTTAATCCCGATTGGGTTCCCCCAGCA
ATATAACCACATGCTTCCCATCCAGAAATCGATCAAATTGTTGGGGGTTG
GGATGAGGGTGGCGTTGAGCAAGGCTTTTCCATGGGTGGTGGCACCGCCG
GTGTTCTTTATGTGTCAGGATGTGAGGTTGGATTACTCGCAGGTGTGGCA
AAGGGCGAGGAGGACTACGAGGGTGTTGAAAGCGGTGGGGATGGCACTAG
TGGCAGCGATGGTTTGGCAGCTGTGGGGGGGAAGGGGGGAGGGAGGGGGC
TGCAGGAGGGGTTGGGGTGCGTGGTAG
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Coding sequence (CDS) from alignment at chr5:205334..207410+

>NO05G00620.1 ID=NO05G00620.1|Name=NO05G00620.1|organism=Nannochloropsis oceanica|type=CDS|length=1902bp|location=Sequence derived from alignment at chr5:205334..207410+ (Nannochloropsis oceanica)
ATGTGTGTGGTGGTGCGTCTTTGCATGTTGAGAAGAGGAGTGGGGAGACA
CGAGCAGTACGCCAATACGGCCATGCCACACCCCTTTTGTGGCGCCTCGT
CATCGTCTTCCGCCTCGTGCTCGAGACCGCGACGTCTCCTCTTCCTTCTC
ATCCTCCTAATTGTCATTGTCCTCCCATTCCCCCTTGTCAAGGCCTATCC
GCAGCCCCGCTCCTTCTTCCGCATGGCCGCCTCCACTTCTACCTCCCCCA
CTACCACTACCTCAGACTCCGCCTCCACCACTCCCATAAAAAGGCAAAAC
TGCAATGTTCTTATTGCCGGCGGTGGCCCTGCCGGCCTCGCTGCTGCACT
TTGTCTCGCTCGCCGTGGCTACTCTGACATTCACATCCTCGAACGCAACC
CCTCCGCCTCCTACTTCGAAGTGGACAAGTCATACCTGTATCGCATTGAC
GGTCGGGGACAGCGGCTCACAGGCTTGCTAGGTATCACGGAGCAAATGAA
AGAGGTGTCCATAACGACGGAAGAATTCTTGGACATAACCATCGTCCAAC
CTGACGGTACTGTGAAAACAGTTAAGGCCCCCGCAGACCCGAGTCAACAG
ACCGCTTATTGGCTCCCCCGTCGTGCCCTTCTCTCCTTCCTCTCATCCCA
AATCGACAAGGAAGACTGCGGAAAGGCCATTACATTTCACTTTGGCGTGA
ACATTGAGAAATTGGTCATGCCGCGGACGCAGGGAGAGGTGGAGGCGCCC
GGGGCCCAAGCAACGGTACAGGTGAGGATGGGAGATGGAACGAGGGTGGA
GTTCCTCTCGCAAAAGGTCTTGGGCTGCGACGGGATGAACAGTAAGATTC
GAACAGGCTTGGCTGATTGGGCAGCCGGAGTATCAGGAGAAGCAGCAGGC
GTGGAGAAGGAGACAAACAGCAAGAAGAGCAAGACTCCTCGTTTTGGCCT
CCACTTCATCAACTCGCCTTCCGCTGGCCTCCGATATAAGATTCTCACCC
TCCTCGACGATTTCCCCCTTCTTGCTTCCACCCCTCAAAATCTAACCGTC
AAACAAACGTGCTATTCCTACGTCGGTCGCCCCACCGGTGGGTACCTCTC
TCCCCTTCCCCCTCTCCGCCTCGGCTTGCTCCCCTTTAAAATGAAGAATA
TACCCCGCACGGCGAACATCATCACCGTCCCCAACGCTCCCATTTTCTCG
CTCACCACGGGCCCTGAAGTCCTGGCGTTTCTCAAAAAAGAATTGCCCCA
GTGTGACATTGACAGGATGGTTTCAAAGGAGGAGGCCGATCGCTTTGCCG
CCTCGCCTGGGGGATATTTCCCTCGACCCCAGTACTGTCTCGAGACGCAG
GTGGTCCTTGGAGGTGGAAAGGAGAGATGGAAGGAGGGAGGGATGGAGGA
AGGGAAGGAGGGAGGGGGCATAGTGCTAATGGGCGATGCGATTCATGCTT
TTCCTCCTGATCTTGGCGCCGGCGTAAACATCGCGTTGTTGGATGTGCTT
GATTTTATCTTTGCTCTAGATCGAAGTGAGGGGGACTGGGGACAGGCGCT
GCCATTGTATGAAAACTTGAGGGCGCCTCAAAGTCGGGCGGTGTGCGAGT
TAATCCCGATTGGGTTCCCCCAGCAATATAACCACATGCTTCCCATCCAG
AAATCGATCAAATTGTTGGGGGTTGGGATGAGGGTGGCGTTGAGCAAGGC
TTTTCCATGGGTGGTGGCACCGCCGGTGTTCTTTATGTGTCAGGATGTGA
GGTTGGATTACTCGCAGGTGTGGCAAAGGGCGAGGAGGACTACGAGGGTG
TTGAAAGCGGTGGGGATGGCACTAGTGGCAGCGATGGTTTGGCAGCTGTG
GGGGGGAAGGGGGGAGGGAGGGGGCTGCAGGAGGGGTTGGGGTGCGTGGT
AG
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Synonyms
Publications