NO05G00530.1, NO05G00530.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G00530.1
Unique NameNO05G00530.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2127
Alignment locationchr5:186473..188599 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:186473..188599 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO05G00530.1 vs.
Match: EWM28325.1 (gtp-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 769.6 bits (1986), Expect = 8.300e-219
Identity = 434/664 (65.36%), Postives = 521/664 (78.46%), Query Frame = 0 
Query:   56 SSEVPHSRPFRIALIGRPNVGKSTLFNRLTGNAKGQWTGGSALVTPIPGTTRDRKTGPCSFGGFSMIVTDTGGLVEEDELGMDETEETVE-EEDED-DPRGLKRQRAREQRKLLQDLINAQVVQALQESDAVLFILDTRGGVGPEEAHLARWLHRMGVRDKTLLVANKAEGGVLSSEMQTAIYDAYEFGLGDPVAVSAAHNEGISDLASVLVERAKVLGFGSGGSSSSSSSSVGSGSRKENGREMDNNEQREGEGGEEGEDEEEGGKEDVITVAFVGLPNVGKSSLVNATLNKRPRAHPSHHRHPEDDDE---------EGNLDQAAA---TASSAYPRLITSSIAGTTRDVVLVDYSYRNHRLRLVDTAGIRKTGRQDHSNVLEHLSVTEALRAVRYANVVVLVLDGQQLRLRRQEQVIASRAFKEGRALVVAANKSDLLLTSPRVFAENVREQLKLLSPQLGSLPVVATSALNGQGVGSLLPAILRAYQAWNTRVSTGLLNRWLLETQRLRSPPLTATTRKTVKLKYMAQVKTRPPTFALVANRAEVEDSYVKFLRNRLQDDFGLHGMDVRLSIKSTGGDNNPYAAKAAQERAERRRALVNKRRKKRA-EWEGGGRGADNKEDEEEREEEERKKRRQAREVTKRLKVEAQNKRRAFKTRTVG 705
            S++   +RPFR+ALIGRPNVGKSTLFNRLTG AKG+WTGG+A+VTPIPGTTRDRKTGPCS+ G SM+VTDTGGLVEEDE+ +++    VE EE ED DPRGL R+R R QRK +Q+LINAQV QA++ESDAVLF++D R GVGP EAH+A WLH++G   KT+LVANK EGGV SS+MQTA+YDAY FGLGDPVA+SAAHNEGIS+LA++LVE+A                SVG       G +   + +++  GG EGE      KE+V+TVAFVGLPN GKSSLVNA L   PRA P     P++D +         EG +  A       +++ PR+ITS +AGTTRDVV VDY+YR  RLRLVDTAGIRK GRQDH N+LE  SV EA RAV++ANVVVLVLD Q LRLRRQEQ +ASRAF+EGRALVV ANKSDLL TSP ++A+NVR+QL LLSPQLGSLPV+ATSAL  QG+GS+LPA+LRAY+AWNTRVSTGLLNRWLLETQRLR+ PLTATTRK VK+KY++Q+KTRPPTFALV NRA +E+SYVKFL+N L+D FGLHGMDVRL ++ TGG+NNPYAAKAA E AER++A +N+++KK A E +  G G   ++D EER E+ERKKRRQ RE+TKR KVEA+NKRRA+ TR VG
Sbjct:    8 SNDKTSTRPFRVALIGRPNVGKSTLFNRLTGTAKGRWTGGTAIVTPIPGTTRDRKTGPCSYAGISMVVTDTGGLVEEDEVRIEDEAGDVEGEEVEDMDPRGLVRERVRAQRKQIQELINAQVAQAVKESDAVLFLVDARAGVGPGEAHVAGWLHKVGASGKTILVANKVEGGV-SSDMQTAVYDAYAFGLGDPVAISAAHNEGISELATLLVEKAL---------------SVGLQGANAPGIDAGRHHEKDAPGGCEGE------KEEVVTVAFVGLPNAGKSSLVNAALEHLPRAPPGPGASPDEDTDNVDSTSEEVEGRVPAALPWPRPLTASVPRMITSEVAGTTRDVVAVDYAYRGRRLRLVDTAGIRKRGRQDHRNLLEQWSVAEAFRAVQFANVVVLVLDAQHLRLRRQEQRVASRAFQEGRALVVVANKSDLLQTSPGLYAQNVRDQLHLLSPQLGSLPVLATSALTRQGIGSILPAVLRAYRAWNTRVSTGLLNRWLLETQRLRASPLTATTRKVVKMKYISQIKTRPPTFALVTNRAGMEESYVKFLKNHLRDSFGLHGMDVRLLLRCTGGENNPYAAKAAAEAAERKKAWMNRQKKKWAQESQDVGSGKAKRDDVEERVEQERKKRRQLREMTKRSKVEARNKRRAYNTRVVG 649
The following BLAST results are available for this feature:
BLAST of NO05G00530.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28325.18.300e-21965.36gtp-binding protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G00530NO05G00530Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G00530.1NO05G00530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G00530.1.cds1NO05G00530.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G00530.1 ID=NO05G00530.1|Name=NO05G00530.1|organism=Nannochloropsis oceanica|type=mRNA|length=2127bp
ATGCTGGCCTACCGCATGTCCTCCCTGTCCTTGGTTTGTCGTCGTGGGTC
GAGACCGGCACACCGCAGCCGACCTCCCCACCCCCTATTCCTGCCCTCCT
TCTCCTCCACCACCATCCCCCTCCACCACCGCACCCACTTTACCACCACG
AACGGTAGCAGCAAATCATCAGAAGTGCCACATTCACGGCCCTTCCGCAT
TGCCCTGATCGGACGTCCTAACGTGGGTAAATCCACGCTCTTCAATCGTC
TAACTGGTAATGCGAAAGGGCAATGGACAGGGGGAAGTGCGCTGGTGACC
CCCATTCCCGGCACTACACGTGATCGGAAAACAGGCCCATGTTCTTTTGG
AGGCTTTTCAATGATTGTGACGGACACGGGGGGGCTTGTGGAGGAGGATG
AGCTGGGAATGGACGAGACGGAGGAAACAGTCGAGGAGGAGGACGAGGAC
GATCCGCGAGGACTGAAGAGGCAAAGAGCACGGGAGCAAAGGAAGTTATT
ACAGGATCTGATAAACGCTCAAGTAGTTCAGGCATTGCAGGAGAGCGATG
CTGTTTTGTTCATCCTGGATACAAGAGGAGGGGTCGGGCCTGAAGAAGCG
CATTTAGCGAGATGGTTGCACCGGATGGGAGTCCGGGACAAGACGTTGCT
TGTGGCTAACAAGGCAGAAGGAGGAGTATTGTCCTCCGAGATGCAAACTG
CTATATATGACGCCTATGAATTTGGGCTAGGGGATCCGGTGGCGGTGTCG
GCGGCACATAACGAGGGGATATCGGATTTGGCGTCTGTCTTGGTGGAGAG
GGCGAAGGTACTGGGCTTCGGGAGTGGAGGTAGTAGTAGCAGCAGCAGTA
GCAGTGTAGGGAGTGGAAGCAGAAAGGAGAATGGGAGGGAAATGGATAAT
AACGAACAAAGGGAAGGGGAGGGGGGAGAAGAGGGGGAGGACGAGGAGGA
GGGAGGGAAGGAGGACGTGATCACCGTTGCCTTTGTGGGGTTACCAAACG
TGGGAAAATCAAGCCTCGTCAATGCAACGCTCAACAAACGCCCTCGAGCC
CACCCTTCTCACCACCGGCACCCTGAAGACGATGATGAGGAAGGAAACCT
CGATCAAGCAGCAGCAACAGCATCGTCCGCCTATCCGCGCCTCATTACCT
CCTCCATCGCCGGTACCACTCGCGACGTCGTCCTAGTGGACTACTCTTAC
CGAAATCATCGTCTTCGCCTAGTCGACACGGCTGGGATCCGTAAAACCGG
CCGCCAAGACCACTCCAACGTCCTCGAACACCTCTCAGTAACGGAAGCCC
TCCGCGCCGTCCGTTACGCTAACGTCGTCGTCCTCGTCCTGGACGGACAG
CAGCTCCGCCTTCGTCGGCAAGAGCAGGTGATCGCCTCCCGTGCTTTCAA
GGAAGGACGAGCCCTTGTCGTGGCAGCGAACAAATCCGACCTCCTCTTAA
CCTCCCCCCGTGTCTTCGCAGAGAACGTCCGCGAGCAACTGAAGCTCCTC
TCGCCCCAACTGGGGTCCTTACCCGTCGTGGCCACATCAGCGCTAAATGG
TCAAGGGGTGGGTAGTCTACTACCGGCCATCCTGCGGGCGTACCAAGCCT
GGAACACGCGGGTGAGCACAGGCTTGCTGAACCGCTGGCTGCTCGAAACC
CAACGTTTGCGTTCTCCCCCGCTAACGGCCACGACCCGGAAGACCGTCAA
ACTGAAGTACATGGCTCAGGTTAAGACACGCCCACCTACCTTTGCATTGG
TTGCAAACAGGGCAGAGGTGGAAGATAGCTATGTCAAATTTTTAAGGAAT
CGCTTACAAGACGATTTTGGCCTGCATGGGATGGATGTCCGCCTGTCGAT
TAAGAGTACGGGGGGGGACAATAACCCGTATGCGGCCAAGGCGGCCCAGG
AGCGGGCAGAACGGAGGAGGGCCTTGGTGAATAAGCGGAGGAAGAAGAGG
GCGGAGTGGGAGGGAGGAGGACGGGGAGCAGATAACAAGGAGGACGAAGA
GGAGAGGGAGGAGGAAGAGAGGAAGAAGCGACGGCAGGCTCGGGAGGTGA
CCAAGAGGCTCAAGGTTGAGGCGCAGAACAAGAGGAGGGCGTTTAAGACC
CGGACAGTGGGGAGCTCCCTGCATTAA
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protein sequence of NO05G00530.1

>NO05G00530.1-protein ID=NO05G00530.1-protein|Name=NO05G00530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=709bp
MLAYRMSSLSLVCRRGSRPAHRSRPPHPLFLPSFSSTTIPLHHRTHFTTT
NGSSKSSEVPHSRPFRIALIGRPNVGKSTLFNRLTGNAKGQWTGGSALVT
PIPGTTRDRKTGPCSFGGFSMIVTDTGGLVEEDELGMDETEETVEEEDED
DPRGLKRQRAREQRKLLQDLINAQVVQALQESDAVLFILDTRGGVGPEEA
HLARWLHRMGVRDKTLLVANKAEGGVLSSEMQTAIYDAYEFGLGDPVAVS
AAHNEGISDLASVLVERAKVLGFGSGGSSSSSSSSVGSGSRKENGREMDN
NEQREGEGGEEGEDEEEGGKEDVITVAFVGLPNVGKSSLVNATLNKRPRA
HPSHHRHPEDDDEEGNLDQAAATASSAYPRLITSSIAGTTRDVVLVDYSY
RNHRLRLVDTAGIRKTGRQDHSNVLEHLSVTEALRAVRYANVVVLVLDGQ
QLRLRRQEQVIASRAFKEGRALVVAANKSDLLLTSPRVFAENVREQLKLL
SPQLGSLPVVATSALNGQGVGSLLPAILRAYQAWNTRVSTGLLNRWLLET
QRLRSPPLTATTRKTVKLKYMAQVKTRPPTFALVANRAEVEDSYVKFLRN
RLQDDFGLHGMDVRLSIKSTGGDNNPYAAKAAQERAERRRALVNKRRKKR
AEWEGGGRGADNKEDEEEREEEERKKRRQAREVTKRLKVEAQNKRRAFKT
RTVGSSLH*
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mRNA from alignment at chr5:186473..188599+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G00530.1 ID=NO05G00530.1|Name=NO05G00530.1|organism=Nannochloropsis oceanica|type=mRNA|length=2127bp|location=Sequence derived from alignment at chr5:186473..188599+ (Nannochloropsis oceanica)
ATGCTGGCCTACCGCATGTCCTCCCTGTCCTTGGTTTGTCGTCGTGGGTC
GAGACCGGCACACCGCAGCCGACCTCCCCACCCCCTATTCCTGCCCTCCT
TCTCCTCCACCACCATCCCCCTCCACCACCGCACCCACTTTACCACCACG
AACGGTAGCAGCAAATCATCAGAAGTGCCACATTCACGGCCCTTCCGCAT
TGCCCTGATCGGACGTCCTAACGTGGGTAAATCCACGCTCTTCAATCGTC
TAACTGGTAATGCGAAAGGGCAATGGACAGGGGGAAGTGCGCTGGTGACC
CCCATTCCCGGCACTACACGTGATCGGAAAACAGGCCCATGTTCTTTTGG
AGGCTTTTCAATGATTGTGACGGACACGGGGGGGCTTGTGGAGGAGGATG
AGCTGGGAATGGACGAGACGGAGGAAACAGTCGAGGAGGAGGACGAGGAC
GATCCGCGAGGACTGAAGAGGCAAAGAGCACGGGAGCAAAGGAAGTTATT
ACAGGATCTGATAAACGCTCAAGTAGTTCAGGCATTGCAGGAGAGCGATG
CTGTTTTGTTCATCCTGGATACAAGAGGAGGGGTCGGGCCTGAAGAAGCG
CATTTAGCGAGATGGTTGCACCGGATGGGAGTCCGGGACAAGACGTTGCT
TGTGGCTAACAAGGCAGAAGGAGGAGTATTGTCCTCCGAGATGCAAACTG
CTATATATGACGCCTATGAATTTGGGCTAGGGGATCCGGTGGCGGTGTCG
GCGGCACATAACGAGGGGATATCGGATTTGGCGTCTGTCTTGGTGGAGAG
GGCGAAGGTACTGGGCTTCGGGAGTGGAGGTAGTAGTAGCAGCAGCAGTA
GCAGTGTAGGGAGTGGAAGCAGAAAGGAGAATGGGAGGGAAATGGATAAT
AACGAACAAAGGGAAGGGGAGGGGGGAGAAGAGGGGGAGGACGAGGAGGA
GGGAGGGAAGGAGGACGTGATCACCGTTGCCTTTGTGGGGTTACCAAACG
TGGGAAAATCAAGCCTCGTCAATGCAACGCTCAACAAACGCCCTCGAGCC
CACCCTTCTCACCACCGGCACCCTGAAGACGATGATGAGGAAGGAAACCT
CGATCAAGCAGCAGCAACAGCATCGTCCGCCTATCCGCGCCTCATTACCT
CCTCCATCGCCGGTACCACTCGCGACGTCGTCCTAGTGGACTACTCTTAC
CGAAATCATCGTCTTCGCCTAGTCGACACGGCTGGGATCCGTAAAACCGG
CCGCCAAGACCACTCCAACGTCCTCGAACACCTCTCAGTAACGGAAGCCC
TCCGCGCCGTCCGTTACGCTAACGTCGTCGTCCTCGTCCTGGACGGACAG
CAGCTCCGCCTTCGTCGGCAAGAGCAGGTGATCGCCTCCCGTGCTTTCAA
GGAAGGACGAGCCCTTGTCGTGGCAGCGAACAAATCCGACCTCCTCTTAA
CCTCCCCCCGTGTCTTCGCAGAGAACGTCCGCGAGCAACTGAAGCTCCTC
TCGCCCCAACTGGGGTCCTTACCCGTCGTGGCCACATCAGCGCTAAATGG
TCAAGGGGTGGGTAGTCTACTACCGGCCATCCTGCGGGCGTACCAAGCCT
GGAACACGCGGGTGAGCACAGGCTTGCTGAACCGCTGGCTGCTCGAAACC
CAACGTTTGCGTTCTCCCCCGCTAACGGCCACGACCCGGAAGACCGTCAA
ACTGAAGTACATGGCTCAGGTTAAGACACGCCCACCTACCTTTGCATTGG
TTGCAAACAGGGCAGAGGTGGAAGATAGCTATGTCAAATTTTTAAGGAAT
CGCTTACAAGACGATTTTGGCCTGCATGGGATGGATGTCCGCCTGTCGAT
TAAGAGTACGGGGGGGGACAATAACCCGTATGCGGCCAAGGCGGCCCAGG
AGCGGGCAGAACGGAGGAGGGCCTTGGTGAATAAGCGGAGGAAGAAGAGG
GCGGAGTGGGAGGGAGGAGGACGGGGAGCAGATAACAAGGAGGACGAAGA
GGAGAGGGAGGAGGAAGAGAGGAAGAAGCGACGGCAGGCTCGGGAGGTGA
CCAAGAGGCTCAAGGTTGAGGCGCAGAACAAGAGGAGGGCGTTTAAGACC
CGGACAGTGGGGAGCTCCCTGCATTAA
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Coding sequence (CDS) from alignment at chr5:186473..188599+

>NO05G00530.1 ID=NO05G00530.1|Name=NO05G00530.1|organism=Nannochloropsis oceanica|type=CDS|length=2127bp|location=Sequence derived from alignment at chr5:186473..188599+ (Nannochloropsis oceanica)
ATGCTGGCCTACCGCATGTCCTCCCTGTCCTTGGTTTGTCGTCGTGGGTC
GAGACCGGCACACCGCAGCCGACCTCCCCACCCCCTATTCCTGCCCTCCT
TCTCCTCCACCACCATCCCCCTCCACCACCGCACCCACTTTACCACCACG
AACGGTAGCAGCAAATCATCAGAAGTGCCACATTCACGGCCCTTCCGCAT
TGCCCTGATCGGACGTCCTAACGTGGGTAAATCCACGCTCTTCAATCGTC
TAACTGGTAATGCGAAAGGGCAATGGACAGGGGGAAGTGCGCTGGTGACC
CCCATTCCCGGCACTACACGTGATCGGAAAACAGGCCCATGTTCTTTTGG
AGGCTTTTCAATGATTGTGACGGACACGGGGGGGCTTGTGGAGGAGGATG
AGCTGGGAATGGACGAGACGGAGGAAACAGTCGAGGAGGAGGACGAGGAC
GATCCGCGAGGACTGAAGAGGCAAAGAGCACGGGAGCAAAGGAAGTTATT
ACAGGATCTGATAAACGCTCAAGTAGTTCAGGCATTGCAGGAGAGCGATG
CTGTTTTGTTCATCCTGGATACAAGAGGAGGGGTCGGGCCTGAAGAAGCG
CATTTAGCGAGATGGTTGCACCGGATGGGAGTCCGGGACAAGACGTTGCT
TGTGGCTAACAAGGCAGAAGGAGGAGTATTGTCCTCCGAGATGCAAACTG
CTATATATGACGCCTATGAATTTGGGCTAGGGGATCCGGTGGCGGTGTCG
GCGGCACATAACGAGGGGATATCGGATTTGGCGTCTGTCTTGGTGGAGAG
GGCGAAGGTACTGGGCTTCGGGAGTGGAGGTAGTAGTAGCAGCAGCAGTA
GCAGTGTAGGGAGTGGAAGCAGAAAGGAGAATGGGAGGGAAATGGATAAT
AACGAACAAAGGGAAGGGGAGGGGGGAGAAGAGGGGGAGGACGAGGAGGA
GGGAGGGAAGGAGGACGTGATCACCGTTGCCTTTGTGGGGTTACCAAACG
TGGGAAAATCAAGCCTCGTCAATGCAACGCTCAACAAACGCCCTCGAGCC
CACCCTTCTCACCACCGGCACCCTGAAGACGATGATGAGGAAGGAAACCT
CGATCAAGCAGCAGCAACAGCATCGTCCGCCTATCCGCGCCTCATTACCT
CCTCCATCGCCGGTACCACTCGCGACGTCGTCCTAGTGGACTACTCTTAC
CGAAATCATCGTCTTCGCCTAGTCGACACGGCTGGGATCCGTAAAACCGG
CCGCCAAGACCACTCCAACGTCCTCGAACACCTCTCAGTAACGGAAGCCC
TCCGCGCCGTCCGTTACGCTAACGTCGTCGTCCTCGTCCTGGACGGACAG
CAGCTCCGCCTTCGTCGGCAAGAGCAGGTGATCGCCTCCCGTGCTTTCAA
GGAAGGACGAGCCCTTGTCGTGGCAGCGAACAAATCCGACCTCCTCTTAA
CCTCCCCCCGTGTCTTCGCAGAGAACGTCCGCGAGCAACTGAAGCTCCTC
TCGCCCCAACTGGGGTCCTTACCCGTCGTGGCCACATCAGCGCTAAATGG
TCAAGGGGTGGGTAGTCTACTACCGGCCATCCTGCGGGCGTACCAAGCCT
GGAACACGCGGGTGAGCACAGGCTTGCTGAACCGCTGGCTGCTCGAAACC
CAACGTTTGCGTTCTCCCCCGCTAACGGCCACGACCCGGAAGACCGTCAA
ACTGAAGTACATGGCTCAGGTTAAGACACGCCCACCTACCTTTGCATTGG
TTGCAAACAGGGCAGAGGTGGAAGATAGCTATGTCAAATTTTTAAGGAAT
CGCTTACAAGACGATTTTGGCCTGCATGGGATGGATGTCCGCCTGTCGAT
TAAGAGTACGGGGGGGGACAATAACCCGTATGCGGCCAAGGCGGCCCAGG
AGCGGGCAGAACGGAGGAGGGCCTTGGTGAATAAGCGGAGGAAGAAGAGG
GCGGAGTGGGAGGGAGGAGGACGGGGAGCAGATAACAAGGAGGACGAAGA
GGAGAGGGAGGAGGAAGAGAGGAAGAAGCGACGGCAGGCTCGGGAGGTGA
CCAAGAGGCTCAAGGTTGAGGCGCAGAACAAGAGGAGGGCGTTTAAGACC
CGGACAGTGGGGAGCTCCCTGCATTAA
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Synonyms
Publications